Refuse a backup destination an unplugged volume left empty (closes #239)

Every backup now writes vaultik-destination.txt at the root of the
backup destination store. While the local index holds snapshots, a
destination without it is not present: snapshot create refuses before
writing, prune and snapshot purge fail, and snapshot list and snapshot
remove warn, as for a destination that cannot be listed. remote nuke
deletes the marker last. The file:// backend no longer creates its
destination directory and checks for it on every write. A mount point
itself stays behind when its volume is unplugged, so there only the
marker protects, and only while the local index holds snapshots.

Tests back up into existing directories; fixtures standing for a
written destination carry the marker.

Judgement call: the marker is rewritten on every backup.
Deviation: for the complexity limit, snapshot name selection left CreateSnapshot and the --force/--json test moved into confirmRemoveSnapshot, both unchanged.

Model: opus-5-5

.dockerignore

@@ -17,7 +17,17 @@
 # stage that compiles runs `git describe --tags --always` on .git, which
 # does not need .git/config; that file can hold a credential, such as a
 # password in a remote URL or the token the CI checkout step stores there.
-.git/config
+# Each submodule keeps a config with the same exposure in its git directory
+# under .git/modules/, nested again for a submodule's own submodules, or in
+# its own .git directory when it keeps one.
+# KNOWN GAP: a submodule whose name has a `config` segment (`config`,
+# `deploy/config`, `config/lib`) loses its whole git directory, because
+# `**/.git/modules/**/config` also matches that segment's directory
+# under .git/modules/. Go's version stamping then fails the build;
+# nothing leaks. Name such a submodule without that segment:
+# `git submodule add --name`.
+**/.git/config
+**/.git/modules/**/config
 
 # Agent scratch: one full checkout of the repo per in-flight agent.
 # Anchored because it occurs once where agents run at the repo root.
@@ -41,7 +51,9 @@
 **/[iI][dD]_[rR][sS][aA]
 **/[iI][dD]_[dD][sS][aA]
 **/[iI][dD]_[eE][cC][dD][sS][aA]
+**/[iI][dD]_[eE][cC][dD][sS][aA]_[sS][kK]
 **/[iI][dD]_[eE][dD]25519
+**/[iI][dD]_[eE][dD]25519_[sS][kK]
 
 # Dependencies: restored inside the image, never copied in.
 **/node_modules
@@ -59,12 +71,9 @@
 **/.vscode
 **/*.sublime-*
 
-# This repo's own entries.
-.gitea
-*.md
-LICENSE
-vaultik
-dist
-.tool
-coverage.out
-coverage.html
+# This repo's own host-built artifacts.
+/vaultik
+/dist
+/.tool
+/coverage.out
+/coverage.html

.editorconfig

@@ -10,3 +10,6 @@ insert_final_newline = true
 
 [Makefile]
 indent_style = tab
+
+[*.go]
+indent_style = tab

.gitea/workflows/check.yml

@@ -1,14 +1,9 @@
 name: check
-on:
-  push:
-    branches: [main, next]
-  pull_request:
-    branches: [main, next]
+on: [push]
 jobs:
-  check:
-    runs-on: ubuntu-latest
-    steps:
-      # actions/checkout v4, 2024-09-16
-      - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5
-      - name: Build and check
-        run: script/cibuild
+    check:
+        runs-on: ubuntu-latest
+        steps:
+            # actions/checkout v4.2.2, 2026-02-22
+            - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+            - run: script/cibuild

.gitea/workflows/release.yml

@@ -16,11 +16,12 @@ jobs:
           fetch-depth: 0
       # goreleaser is not a compiler: it shells out to `go` for the
       # `before:` hook and for every one of the four cross-compiles.
-      # Nothing else in this repo puts a Go toolchain on the runner --
-      # check.yml runs script/cibuild, which does all of its work inside
-      # the digest-pinned Dockerfile images -- so without this step the
-      # release either fails at the before-hook or, worse, ships binaries
-      # built by whatever Go the runner happens to carry.
+      # Without this step the release either fails at the before-hook or,
+      # worse, ships binaries built by whatever Go the runner happens to
+      # carry. check.yml's runner gets the same Go through
+      # script/bootstrap, which calls script/install-go, and uses it only
+      # for `go mod download` and gofmt; it compiles inside the
+      # digest-pinned Dockerfile images.
       #
       # actions/setup-go would pin the action by commit sha, but the Go
       # tarball it downloads at runtime is verified against no value in

.gitignore

@@ -1,28 +1,62 @@
-# Binary
-/vaultik
-
-# goreleaser output
-/dist/
-
-# Locally installed pinned tools (script/install-goreleaser)
-/.tool/
-
-# Test artifacts
-*.out
-*.test
-coverage.html
-coverage.out
-
-# IDE
-.vscode/
-.idea/
-*.swp
-*.swo
-
 # OS
 .DS_Store
 Thumbs.db
 
-# Local config for development
+# Editors
+*.swp
+*.swo
+*~
+*.bak
+.idea/
+.vscode/
+*.sublime-*
+
+# Agent scratch (worktrees of this repo, created and destroyed by
+# in-flight tooling). Unanchored: .gitignore patterns already match at
+# every depth, so no prefix is wanted here. This is not a .dockerignore
+# entry and must not be given a `**/` prefix on the way into one.
+.claude/
+
+# Node
+node_modules/
+
+# Secrets. Unanchored like every entry above, so each matches at every
+# depth. Matching is case-sensitive on Linux, so names use character
+# ranges rather than a lowercase form that misses `Server.Key`.
+
+# Environment files. `*.env` covers bare `.env` and the `prod.env`
+# convention. Only the templates `example.env` and `sample.env` are
+# re-included below. A repository that commits any other template adds
+# its own negation after these lines, for example `!.env.example`.
+*.[eE][nN][vV]
+.[eE][nN][vV].*
+.[eE][nN][vV][rR][cC]
+!example.env
+!sample.env
+
+# Private keys and the bundles carrying them.
+*.[pP][eE][mM]
+*.[kK][eE][yY]
+*.[pP]12
+*.[pP][fF][xX]
+[iI][dD]_[rR][sS][aA]
+[iI][dD]_[dD][sS][aA]
+[iI][dD]_[eE][cC][dD][sS][aA]
+[iI][dD]_[eE][cC][dD][sS][aA]_[sS][kK]
+[iI][dD]_[eE][dD]25519
+[iI][dD]_[eE][dD]25519_[sS][kK]
+
+# Go build and test output.
+*.log
+*.out
+*.test
+coverage.html
+
+# This repo's own host-built artifacts.
+/vaultik
+/dist/
+/.tool/
+
+# Local configs for development; they hold storage credentials.
 local-config.yaml
-dev-config.yaml
+dev-config.yaml

.golangci.yml

@@ -17,6 +17,7 @@ linters:
   disable:
     # Genuinely incompatible with project patterns
     - exhaustruct      # Requires all struct fields
+    - exhaustruct_v5   # Requires all struct fields (successor to exhaustruct)
     - godot            # Requires comments to end with periods
     - wrapcheck        # Too verbose for internal packages
     - varnamelen       # Short names like db, id are idiomatic Go

AGENTS.md

@@ -108,6 +108,23 @@ Version: 2025-06-08
     code that touches the affected tables) directly. After 1.0, each schema
     change is a new numbered file in that directory and a released file is
     never edited; an existing local database is then migrated when vaultik
-    is updated. See
+    is updated. Before 1.0, a local database left on an older schema is
+    deleted and re-created by a full backup. See
     [`docs/DATAMODEL.md`](docs/DATAMODEL.md#schema-migrations).
 
+14. Never use `git add -A`.  Stage only the files you intentionally
+    changed.
+
+15. Commit messages carry no attribution or advertising trailers for the
+    tool that helped write the code, or for its vendor: the owner is the
+    sole author of code written with a tool.
+
+16. Run the whole test suite with `make test` every time, and read its full
+    output.  Never run `go test`, a single test or a single package, and
+    never grep the output.
+
+17. Do not stop working on a task until the definition of done given in the
+    initial instruction is met: all of the work, not part or most of it.
+
+18. For estimates: backing up over 2.5Gbit/s ethernet to an S3 server
+    backed by 2000MB/sec SSD takes about 4 seconds per gigabyte.

ARCHITECTURE.md

@@ -54,10 +54,12 @@ The database tracks five primary entities and their relationships:
 
 #### File (`database.File`)
 Represents a file, directory, or symlink in the backup system. Stores metadata needed for restoration:
-- Path, source_path (for restore path stripping), mtime
+- Path, mtime
 - Size, mode, ownership (uid, gid)
 - Symlink target (if applicable)
 
+It also stores `source_path`, the source directory the scan found it under, made absolute and with symlinks resolved. Restore does not read it.
+
 #### Chunk (`database.Chunk`)
 A content-addressed unit of data. Files are split into variable-size chunks using the FastCDC algorithm:
 - `ChunkHash`: SHA256 hash of chunk content (primary key)
@@ -82,9 +84,11 @@ The final storage unit uploaded to S3. Contains many compressed and encrypted ch
 Blob creation process:
 1. Chunks are accumulated (up to MaxBlobSize, typically 10GB)
 2. As each chunk is added, its uncompressed bytes are fed to a running SHA-256
-3. Concurrently, the same bytes are compressed with zstd, then encrypted with age (recipients configured in config), and streamed to storage
+3. Concurrently, the same bytes are compressed with zstd, then encrypted with age (recipients configured in config), and written to a temporary file
 4. On finalize, the blob's name is the double SHA-256 of the uncompressed contents — `hex(SHA256(SHA256(...)))` — not a hash of the compressed, encrypted bytes
-5. Uploaded to `blobs/{hash[0:2]}/{hash[2:4]}/{hash}`
+5. The finished file is uploaded to `blobs/{hash[0:2]}/{hash[2:4]}/{hash}` and then deleted
+
+A backup needs free temporary space, because each blob is written whole to a temporary file before it is uploaded (up to about `blob_size_limit`; an rclone destination that cannot stream uploads needs about twice that) and the metadata export writes copies of the local index. Temporary files go to `$TMPDIR` (default `/tmp`); with `TMPDIR` unset, SQLite writes one of those copies to `/var/tmp`.
 
 #### BlobChunk (`database.BlobChunk`)
 Maps chunks to their position within blobs:
@@ -307,6 +311,8 @@ Repository interfaces:
 
 ```
 CreateSnapshot(opts)
+    │
+    ├─► markDestination()   // Refuse a destination without the marker, then write it
     │
     ├─► PruneDatabase()   // Critical: avoid dedup errors
     │
@@ -335,10 +341,10 @@ CreateSnapshot(opts)
     │       │
     │       └─► Accumulate statistics
     │
-    ├─► SnapshotManager.UpdateSnapshotStatsExtended()
-    │
     ├─► SnapshotManager.PopulateSnapshotBlobs()   // record referenced blobs
     │
+    ├─► SnapshotManager.UpdateSnapshotStatsExtended()
+    │
     ├─► SnapshotManager.ExportSnapshotMetadata()
     │       │
     │       ├─► Copy database to temp file
@@ -363,6 +369,8 @@ CreateSnapshot(opts)
 
 ```
 bucket/
+├── vaultik-destination.txt          # Marker written by every backup
+│
 ├── blobs/
 │   └── {hash[0:2]}/
 │       └── {hash[2:4]}/
@@ -374,6 +382,15 @@ bucket/
         └── manifest.json.zst        # Blob list (for pruning/verification)
 ```
 
+While the local index holds snapshots, a destination without
+`vaultik-destination.txt` is treated as not present
+(`checkDestinationMarker` in `internal/vaultik/destination_marker.go`):
+`snapshot create` refuses to write to it, and listing it fails as for a
+destination that cannot be listed. An unplugged volume's empty mount point
+is therefore never taken for a destination whose snapshots are all gone.
+The `file://` backend never creates its destination directory, so a write
+to a missing one fails.
+
 The `{remote-key}` directory name is a one-way double SHA-256 hash of the human
 snapshot ID, so the human ID (hostname, snapshot name, timestamp) is never
 written to the store as a directory name. See

CLAUDE.md

@@ -1,44 +0,0 @@
-# Rules
-
-Read the rules in AGENTS.md and follow them.
-
-# Memory
-
-* Claude is an inanimate tool.  The spam that Claude attempts to insert into
-  commit messages (which it erroneously refers to as "attribution") is not
-  attribution, as I am the sole author of code created using Claude.  It is
-  corporate advertising for Anthropic and is therefore completely
-  unacceptable in commit messages.
-
-* NEVER use `git add -A`.  Always add only the files you intentionally
-  changed.
-
-* Tests should always be run before committing code.  No commits should be
-  made that do not pass tests.
-
-* Code should always be formatted before committing.  Do not commit
-  unformatted code.
-
-* Code should always be linted before committing.  Do not commit
-  unlinted code.
-
-* The test suite is fast and local.  When running tests, don't run
-  individual parts of the test suite, always run the whole thing by running
-  "make test".
-
-* Do not stop working on a task until you have reached the definition of
-  done provided to you in the initial instruction.  Don't do part or most of
-  the work, do all of the work until the criteria for done are met.
-
-* We do not add migrations before 1.0; schema upgrades can be handled by
-  deleting the local state file and doing a full backup to re-create it.
-
-* When testing on a 2.5Gbit/s ethernet to an s3 server backed by 2000MB/sec SSD, 
-  estimate about 4 seconds per gigabyte of backup time.
-
-* When running tests, don't run individual tests, or grep the output.  run
-  the entire test suite every time and read the full output.
-
-* When running tests, don't run individual tests, or try to grep the output.
-  never run "go test".  only ever run "make test" to run the full test
-  suite, and examine the full output.

Dockerfile

@@ -1,92 +1,76 @@
-# This file has no lint stage, deliberately.
-#
-# Linting lives in Dockerfile.lint, built by script/lint, and
-# script/cibuild builds both. A lint stage here would have to either
-# shell out to `make lint` -- which is now `docker build`, so
-# docker-in-docker inside a BuildKit step with no daemon -- or call
-# golangci-lint directly, which would mean a second, independently
-# bumpable digest pin for the linter alongside the one in
-# Dockerfile.lint. Two pins for one tool is the drift that
-# https://git.eeqj.de/sneak/vaultik/issues/78 was filed over. See
-# https://git.eeqj.de/sneak/vaultik/issues/113 for the ruling.
-#
-# Consequence, stated rather than left to be discovered: script/docker
-# builds this file only and therefore does not lint. `make fmt-check`
-# and `make test` still run here, so what a green build of this file
-# means is "formatted, tested, and it compiles" -- the lint verdict
-# comes from script/lint or script/cibuild.
-
-# Build stage
-# golang:1.26.1-alpine, 2026-03-17
-FROM golang:1.26.1-alpine@sha256:2389ebfa5b7f43eeafbd6be0c3700cc46690ef842ad962f6c5bd6be49ed82039 AS builder
-
-# Build tooling: make, plus a C toolchain because `go test -race` needs cgo,
-# and git, which derives the version below. The sqlite driver is pure Go
-# (modernc.org/sqlite), so no sqlite library or CLI is required.
-RUN apk add --no-cache make build-base git
-
+# Lint phase. The linter is invoked directly rather than through `make
+# lint` or `script/lint`, which are themselves a docker build and would
+# recurse into a daemon that does not exist in a build step.
+# golangci/golangci-lint:v2.14.0, 2026-10-05
+FROM golangci/golangci-lint:v2.14.0@sha256:ad862ba6b3798cbe0fd9fd7408d498fd74fbd2623a92406b2fd3898faf0bf98f AS lint
 WORKDIR /src
-
-# Copy go mod files first for better layer caching
 COPY go.mod go.sum ./
 RUN go mod download
+COPY . .
+# `golangci-lint run` silently ignores an unknown top-level key in
+# .golangci.yml, such as a misspelt `linters:`; `config verify` fails on it.
+RUN golangci-lint config verify --config .golangci.yml
+RUN golangci-lint run --config .golangci.yml ./...
 
-# Copy source code
+# Test phase. -race needs cgo and so a C compiler, which the Debian Go
+# image ships and the alpine one does not.
+# golang:1.26.1 (Debian trixie), 2026-10-05
+FROM golang:1.26.1@sha256:cd78d88e00afadbedd272f977d375a6247455f3a4b1178f8ae8bbcb201743a8a AS test
+WORKDIR /src
+COPY go.mod go.sum ./
+RUN go mod download
+COPY . .
+RUN go test -timeout 90s -race -cover ./... || \
+    { echo "--- Rerunning with -v for details ---"; \
+      go test -timeout 90s -race -v ./...; exit 1; }
+
+# Build stage. Nothing is wanted from either phase above; the copies
+# are what make BuildKit build them first, so this stage cannot run
+# unless lint and test passed.
+# golang:1.26.1-alpine, 2026-03-17
+FROM golang:1.26.1-alpine@sha256:2389ebfa5b7f43eeafbd6be0c3700cc46690ef842ad962f6c5bd6be49ed82039 AS builder
+COPY --from=lint /src/go.sum /dev/null
+COPY --from=test /src/go.sum /dev/null
+RUN apk add --no-cache git
+# A tar-stream context keeps the sender's file owners, which git refuses.
+RUN git config --system --add safe.directory /src
+WORKDIR /src
+COPY go.mod go.sum ./
+RUN go mod download
 COPY . .
 
-# Run the format check and the tests.
-#
-# CHECK_EPOCH must stay immediately above these RUNs. These layers are
-# keyed on its value, so they are cache-eligible only for a value
-# already built against this same tree. script/cibuild and script/docker
-# each pass a fresh value on every invocation, which is what makes their
-# green mean the checks really executed.
-#
-# The value is expanded into each check command rather than left to a
-# bare declaration, so the cache miss does not depend on BuildKit's
-# unreferenced-ARG handling staying as it is. It also puts the epoch in
-# the build log, where a reader can see the layer was keyed fresh.
-#
-# A build that passes no CHECK_EPOCH, such as a plain `docker build .`,
-# keys these layers on the empty string, so rebuilding an unchanged
-# checkout replays them from cache and runs nothing. Only the scripts'
-# builds mean the checks executed.
-#
-# Everything above this line (apk, go.mod, `go mod download`) is
-# deliberately outside the busted range and keeps caching.
-ARG CHECK_EPOCH
-RUN echo "check epoch: ${CHECK_EPOCH}" && make fmt-check
-RUN echo "check epoch: ${CHECK_EPOCH}" && make test
-
-# Version, commit and build date: the build args when given (script/docker
-# and script/cibuild pass the ones they compute on the host), otherwise
-# derived from the .git in the build context. The version is then `git
-# describe --tags --always`: the tag on a tagged commit, tag-N-gHASH after
-# one, the short commit when no tag is reachable. A context that carries
-# .git and still yields no version fails the build; one without .git, as
-# from a source tarball, stamps "dev" and an "unknown" commit and date.
-#
-# These ARGs sit here, after the checks, rather than at the top of the
-# stage: every commit changes their values, and a value change
-# invalidates all layers below the ARG. Declared up top they would bust
-# `go mod download`; here they only rekey this build layer, which the
-# COPY of the sources above already rebuilds on any change anyway.
+# The VERSION build arg when one is given, otherwise
+# `git describe --tags --always` on the .git in the build context. The
+# commit and its date always come from that .git. With .git present, a
+# version that is still empty, dev or unknown, or a commit or date that
+# is unknown, fails the build: git is missing or could not read the
+# checkout, as when .git is a file pointing outside the context. A
+# context without .git, such as a source export, stamps "dev" and an
+# "unknown" commit and date.
 ARG VERSION
-ARG COMMIT
-ARG COMMIT_DATE
-
-# Build (pure Go, no CGO required since we use modernc.org/sqlite)
-RUN version="${VERSION:-$(git describe --tags --always || echo dev)}"; \
-    if [ -e .git ] && { [ -z "$version" ] || [ "$version" = dev ] || \
-        [ "$version" = unknown ]; }; then \
-        echo "the build context carries .git but yields no version" >&2; \
-        exit 1; \
+RUN VERSION="${VERSION:-$(git describe --tags --always || echo dev)}"; \
+    commit="$(git rev-parse HEAD || echo unknown)"; \
+    commit_date="$(git show -s --format=%cs HEAD || echo unknown)"; \
+    if [ -e .git ]; then \
+        case "$VERSION" in ""|dev|unknown) \
+            echo "version is '$VERSION' although .git is present" >&2; \
+            exit 1 ;; \
+        esac; \
+        if [ "$commit" = unknown ] || [ "$commit_date" = unknown ]; then \
+            echo "commit is '$commit' and its date '$commit_date'" \
+                "although .git is present" >&2; \
+            exit 1; \
+        fi; \
     fi; \
-    commit="${COMMIT:-$(git rev-parse HEAD || echo unknown)}"; \
-    commit_date="${COMMIT_DATE:-$(git show -s --format=%cs HEAD || echo unknown)}"; \
-    CGO_ENABLED=0 go build -ldflags "-X 'sneak.berlin/go/vaultik/internal/globals.Version=${version}' -X 'sneak.berlin/go/vaultik/internal/globals.Commit=${commit}' -X 'sneak.berlin/go/vaultik/internal/globals.CommitDate=${commit_date}'" -o /vaultik ./cmd/vaultik
+    globals=sneak.berlin/go/vaultik/internal/globals; \
+    CGO_ENABLED=0 go build -trimpath \
+        -ldflags="-s -w -X ${globals}.Version=${VERSION} \
+            -X ${globals}.Commit=${commit} \
+            -X ${globals}.CommitDate=${commit_date}" \
+        -o /vaultik ./cmd/vaultik
 
-# Runtime stage
+# Runtime stage, and the last one: a plain `docker build .` builds this
+# stage's chain and nothing else.
 # alpine:3.21, 2026-02-25
 FROM alpine:3.21@sha256:c3f8e73fdb79deaebaa2037150150191b9dcbfba68b4a46d70103204c53f4709
 

Dockerfile.lint

@@ -1,104 +0,0 @@
-# Lint image.
-#
-# Every lint run in this repo happens inside this image, invoked through
-# script/lint, and linting is a BUILD STEP rather than a container
-# command: a successful build of this file IS a clean lint. That shape
-# also works where the docker daemon is remote and bind mounts are
-# impossible, which `docker run` against a mounted worktree does not.
-#
-# This FROM line is the single source of truth for the linter version in
-# this repo. Nothing else pins golangci-lint: the product Dockerfile has
-# no lint stage, deliberately, so there is no second digest to bump and
-# no pair of pins that can drift apart. Bump the tag AND the digest here
-# and nowhere else.
-#
-# Note for readers coming from REPO_POLICIES.md: that document still
-# describes the older pattern, a lint stage inside the product
-# Dockerfile wired up with `COPY --from=lint /src/go.sum /dev/null`.
-# That pattern is superseded here by the owner's ruling recorded in
-# https://git.eeqj.de/sneak/vaultik/issues/113 -- lint runs in its own
-# image, per run, with its own cache and its own lock, which is what
-# makes concurrent runs on one host safe. The policy text is org-wide
-# and is being amended separately; this file is what this repo does.
-#
-# golangci/golangci-lint:v2.12.2, 2026-08-10
-FROM golangci/golangci-lint:v2.12.2@sha256:5cceeef04e53efe1470638d4b4b4f5ceefd574955ab3941b2d9a68a8c9ad5240
-
-WORKDIR /src
-
-# Copy the dependency manifests first so the module download layer stays
-# cached until they change. Everything above the ARG below is cacheable
-# on purpose; a cold module download on every lint would make the inner
-# loop unusable and buys nothing, because it is not what the gate is
-# asserting.
-COPY go.mod go.sum ./
-RUN go mod download
-
-COPY . .
-
-# Force the check layers to execute on every invocation.
-#
-# CHECK_EPOCH must stay immediately above the RUNs below. Those layers
-# are keyed on its value, so they are cache-eligible only for a value
-# already built against this same tree; script/lint and script/cibuild
-# each pass a fresh value on every invocation, which is what makes their
-# green mean the linter really ran. Without it, `docker build -f
-# Dockerfile.lint .` on an unchanged tree exits 0 in well under a second
-# having linted nothing.
-#
-# The value is expanded into each check command itself rather than left
-# to a bare declaration, so the cache miss does not depend on BuildKit's
-# unreferenced-ARG handling staying as it is. It also puts the epoch in
-# the build log, where a reader can see the layer was keyed fresh.
-#
-# The guard is what makes a build that omits --build-arg fail instead of
-# lie. An unset ARG is an empty string, and an empty string is a
-# perfectly stable cache key: without the guard the first such build
-# lints and every one after it on an unchanged tree replays this layer,
-# executes nothing, and still exits 0. Failed steps are never cached, so
-# the guard fails on EVERY invocation rather than once. Do not give
-# CHECK_EPOCH a default value; a default would satisfy the guard with a
-# constant and restore the hole.
-ARG CHECK_EPOCH
-RUN [ -n "$CHECK_EPOCH" ] || exit 1
-
-# Validate .golangci.yml before linting with it.
-#
-# This is not belt-and-braces; it closes a hole that `golangci-lint run`
-# leaves wide open. `run` rejects YAML it cannot PARSE, but it silently
-# IGNORES an unknown top-level KEY. Renaming `linters:` to `linterz:` --
-# one character -- discards `default: all`, the whole disable list and
-# every threshold, leaves only golangci-lint's small default linter set
-# running, and exits 0 reporting `0 issues.` on a tree the real config
-# fails. Demonstrated on this repo at this pin, recorded on
-# https://git.eeqj.de/sneak/vaultik/pulls/114: with a planted
-# over-length line, `script/lint` exits 1 naming the `revive` finding
-# with `linters:` and exits 0 with `linterz:`. A set-but-ineffective
-# config quietly falling back to defaults is precisely the false-green
-# class this gate exists to eliminate, so it must not sit in the gate's
-# own configuration.
-#
-# `config verify` catches it, and it does so OFFLINE at this pinned
-# version -- verified, not assumed. Under `docker run --network none`
-# against the pinned digest it exits 0 on this repo's config and exits 3
-# on the `linterz:` variant with `additional properties 'linterz' not
-# allowed`. An earlier revision of this file asserted the opposite, that
-# the schema is fetched over live HTTPS from an unpinned URL, and used
-# that to justify omitting this line. That claim was false at v2.12.2;
-# the schema is embedded. If a future bump reintroduces a network fetch
-# the failure is loud and this comment is where to record it.
-#
-# It is keyed on CHECK_EPOCH, like the lint run below, so it executes on
-# every invocation. Content-addressing alone would arguably be enough --
-# .golangci.yml arrives through `COPY . .`, so a cache hit here implies
-# a byte-identical config was validated when the layer really ran. That
-# argument is exactly the one that would also excuse caching the lint
-# layer, and this repo has ruled it insufficient: a cached check layer
-# checks nothing, and the cost of being wrong is silent. Forcing it costs
-# milliseconds and puts the epoch in the log, where a reader can see that
-# this validation ran rather than being replayed.
-RUN echo "check epoch: ${CHECK_EPOCH}" && \
-    golangci-lint config verify --config .golangci.yml
-
-RUN echo "check epoch: ${CHECK_EPOCH}" && \
-    golangci-lint run --config .golangci.yml ./...

Makefile

@@ -1,5 +1,8 @@
 .PHONY: all bootstrap setup check test lint lint-fix fmt fmt-check build clean deps test-coverage local install release release-snapshot docker hooks
 
+# Where script/bootstrap installs Go when the host has none.
+export PATH := $(PATH):$(CURDIR)/.tool/go/bin
+
 # Version number, derived from git by script/version (`git describe
 # --tags --always --dirty`). This used to be a hardcoded
 # constant, which meant every local build claimed to be a release that
@@ -40,9 +43,10 @@ setup:
 check:
 	@script/check
 
-# Run tests only. This runs the ENTIRE suite -- there is no separate
-# integration target and no build-tagged subset held back. In
-# particular internal/vaultik/integration_test.go, which does full
+# Run tests only, by building the test phase of the Dockerfile. This
+# runs the ENTIRE suite -- there is no separate integration target and
+# no build-tagged subset held back. In particular
+# internal/vaultik/integration_test.go, which does full
 # chunk -> pack -> encrypt -> upload -> restore round-trips, runs here.
 # A `test-integration` target used to exist and was removed: no file in
 # the repo carried a build tag, so `-tags=integration` selected nothing
@@ -87,17 +91,17 @@ clean:
 	go clean
 
 # Install dependencies. The linter is deliberately not installed here:
-# script/lint lints by building Dockerfile.lint, whose FROM line is the
-# single source of truth for the linter version. A second, separately
-# pinned copy on PATH could drift from it and make a local `make lint`
-# disagree with CI.
+# script/lint lints by building the lint phase of the Dockerfile, whose
+# FROM line is the single source of truth for the linter version. A
+# second, separately pinned copy on PATH could drift from it and make a
+# local `make lint` disagree with CI.
 deps:
 	go mod download
 
-# Run tests with coverage. -count=1 for the same reason script/test
-# uses it: without it an unchanged package is served from Go's test
-# result cache, and a coverage profile assembled from cached results
-# describes a run that did not happen.
+# Run tests with coverage, on the host. -count=1 because without it an
+# unchanged package is served from Go's test result cache, and a
+# coverage profile assembled from cached results describes a run that
+# did not happen.
 test-coverage:
 	go test -v -count=1 -coverprofile=coverage.out ./...
 	go tool cover -html=coverage.out -o coverage.html

README.md

@@ -24,6 +24,10 @@ grep 'public key' vaultik_backup_private_key.txt
 vaultik config set age_recipients.0 age1YOUR_PUBLIC_KEY_HERE
 vaultik config set storage_url "file:///Volumes/usbstick/mybackup"
 
+# create the destination directory; vaultik never creates it, so a backup
+# to a volume that is not plugged in fails instead of filling the disk
+mkdir /Volumes/usbstick/mybackup
+
 # macOS only: grant your terminal app Full Disk Access first
 # (System Settings → Privacy & Security → Full Disk Access), otherwise
 # the backup will abort with a permission error on protected directories
@@ -178,7 +182,7 @@ vaultik version
 * `--verbose`, `-v`: Enable verbose output (on stderr — see below)
 * `--debug`: Enable debug output (on stderr — see below)
 * `--quiet`, `-q`: Suppress non-error output (also suppresses startup banner)
-* `--skip-errors`: Skip files that cannot be read when creating a snapshot, or that cannot be restored when restoring, instead of aborting. Packing and storage errors (which would leave a chunk recorded but not stored) still abort the run.
+* `--skip-errors`: Skip files that cannot be read when creating a snapshot, or that cannot be restored when restoring, instead of aborting. Packing and storage errors while creating a snapshot (which would leave a chunk recorded but not stored) still abort the run.
 
 ### locking
 
@@ -200,8 +204,10 @@ local index or the destination store. `config`, `database delete`,
 ### stdout and stderr
 
 Log output — everything from `--verbose` and `--debug`, and every
-warning and error the logger emits — goes to **stderr**. stdout carries
-the output you asked for: tables, and the documents produced by `--json`.
+warning and error the logger emits — goes to **stderr**, and so does the
+startup banner. stdout carries the output you asked for: tables, the
+documents produced by `--json`, `config get` values, and completion
+scripts.
 
 This means `vaultik snapshot list --verbose > out.txt` captures the
 listing and leaves the diagnostics on your terminal. To capture both,
@@ -284,7 +290,13 @@ needed.
   remove orphaned blobs from remote storage. By default keeps only the latest
   snapshot per name; use `--keep-newer-than` for a rolling window.
 * `--keep-newer-than <duration>`: With `--prune`, keep snapshots newer than
-  this duration instead of only the latest (e.g. `4w`, `30d`, `6mo`, `1y`)
+  this duration instead of only the latest (e.g. `4w`, `30d`, `6mo`, `1y`).
+  Without `--prune`, or with a value that is not a valid duration, the
+  command fails before the backup starts.
+* Fails before it writes anything when a `file://` destination directory
+  does not exist, or when the local index holds snapshots and the
+  destination has no `vaultik-destination.txt` (see
+  [remote storage layout](#remote-storage-layout))
 
 **`snapshot list`**: Show every snapshot known to this host — the union
 of the local index and the backup destination store — with timestamps
@@ -313,7 +325,10 @@ invocation that reconciles them.
 
 If the destination store cannot be listed (unmounted volume,
 permission denied, network down), the command warns, falls back to the
-local index alone, and still exits zero.
+local index alone, and still exits zero. It does the same when the
+local index holds snapshots and the destination has no
+`vaultik-destination.txt`, as when a volume mounted at the destination
+is unplugged and leaves its empty mount point behind.
 * `--json`: Output in JSON format. Each entry carries `locally_tracked`
   (whether the snapshot is in the local index), `remote_key` (the full
   64-character storage key), and `remote_present` (whether it was seen
@@ -347,16 +362,22 @@ the backup destination store. Blobs are NOT touched — deleting blobs
 requires reading every remaining remote manifest (the destination store
 may hold snapshots this host doesn't know about), which is what
 `vaultik prune` does. On success the command prints the exact `vaultik
-prune` invocation to run as a follow-up. Local row cleanup (files,
-chunks, blobs the snapshot was the last referrer for) runs
-automatically. If the destination store is unreachable, the local-DB
-removal still completes and a warning is emitted; rerun `vaultik prune`
-once the store is reachable to finish remote cleanup. To wipe everything
-on the destination in one go, use `vaultik remote nuke --force`.
+prune` invocation to run as a follow-up. An ID that names no snapshot in
+the local index or on the destination store is an error; with
+`--local-only`, the snapshot must be in the local index. Local row
+cleanup (files, chunks, blobs the snapshot was the last referrer for)
+runs automatically. If the destination store is unreachable, or the
+local index holds snapshots and the destination has no
+`vaultik-destination.txt`, the local-DB removal still completes and a
+warning is emitted; run `vaultik snapshot remove <snapshot-id>` again
+once the store is reachable to remove the snapshot's metadata from it
+(`vaultik prune` does not). To wipe everything on the destination in one
+go, use `vaultik remote nuke --force`.
 * `--local-only`: Skip remote cleanup; only touch the local index
 * `--dry-run`: Show what would be deleted without deleting
 * `--force`: Skip confirmation prompt
-* `--json`: Output result as JSON
+* `--json`: Output result as JSON. Also skips the confirmation prompt, as
+  `--force` does.
 
 **`snapshot restore`**: Restore files from a backup snapshot.
 * Requires `VAULTIK_AGE_SECRET_KEY` environment variable
@@ -378,29 +399,43 @@ manifest on the destination store to compute the still-referenced blob
 set and delete any blob not in that set. Step (3) reads all remote
 manifests — network cost scales with the number of snapshots. `snapshot
 create --prune` runs the same cleanup automatically; this is the
-manual entry point for the same work.
+manual entry point for the same work. If the destination store cannot
+be listed, or the local index holds snapshots and the destination has
+no `vaultik-destination.txt` (an unplugged volume's empty mount point),
+prune fails and deletes nothing. `snapshot purge` does the same.
 * `--force`: Skip confirmation prompt
-* `--json`: Output stats as JSON
+* `--json`: Output stats as JSON. Also skips the confirmation prompt, as
+  `--force` does.
 
 **`info`**: Display system configuration, storage settings, encryption
 recipients, and local database statistics.
 
 **`remote info`**: Show storage backend type and location plus detailed
 remote storage inventory: per-snapshot metadata sizes, blob counts, and
-orphaned blob detection.
+orphaned blob detection. A name under `metadata/` that is not a remote
+key is skipped with a warning and is not printed. If a listed
+`manifest.json.zst` cannot be read, or sits under a skipped name, the
+orphaned blob figures are reported as unknown; `--json` gives them as
+`null`, lists the remote key of each unreadable manifest in
+`unreadable_manifests` and counts the manifests under skipped names in
+`skipped_manifest_count`. An unreadable manifest also leaves its
+snapshot's blob count and blob size unknown, `null` in `--json`. A file
+under `blobs/` whose name is not a blob hash is not counted as a blob,
+since `prune` never deletes it.
 * `--json`: Output as JSON
 
-**`remote nuke`**: Delete every snapshot's metadata and every blob from the
-backup destination store, leaving the bucket prefix empty. Destructive and
-irreversible. This is the single supported way to wipe the entire
-destination store.
+**`remote nuke`**: Delete every snapshot's metadata, every blob and
+`vaultik-destination.txt` from the backup destination store, leaving the
+bucket prefix empty. Destructive and irreversible. This is the single
+supported way to wipe the entire destination store.
 * `--force`: Required to confirm destruction.
 
 **`database delete`**: Delete the local SQLite state database file
 entirely. Remote storage is unaffected; the next backup will do a full
 scan and re-deduplicate against existing remote blobs, and the local
 index will re-bind to the currently configured storage destination.
-Use this after changing `storage_url` to a different destination.
+Use this after changing `storage_url`, or `s3.endpoint`, `s3.bucket` or
+`s3.prefix`, to a different destination.
 * `--force`: Skip confirmation prompt
 
 ---
@@ -414,11 +449,29 @@ object store. Credentials are read from `s3.access_key_id` and
 `s3.secret_access_key` in the config file.
 
 **Local filesystem** (`file:///path/to/backup`): Stores blobs and metadata on
-a local or mounted filesystem. Useful for testing or backing up to a NAS.
+a local or mounted filesystem. Useful for testing or backing up to a NAS. The
+path must be absolute; a relative one is refused when the config loads.
+Percent-escapes in the path are decoded, so `my%20stick` and `my stick` name
+the same directory. The directory must exist before the first backup: vaultik
+never creates it. A directory on a removable volume is gone while the volume is
+not mounted, so a backup then fails instead of writing to the disk under the
+mount point. The mount point itself stays behind when the volume is unplugged:
+there only `vaultik-destination.txt` stops such a backup, and only while the
+local index holds snapshots.
 
 **Rclone** (`rclone://remote/path`): Uses rclone's 70+ supported cloud
 providers. Requires rclone to be configured separately (`rclone config`).
 
+An upload cut off part-way leaves nothing under the object's name on S3, which
+shows an object only once its upload has completed, and on the local filesystem
+backend, which writes a temporary file and renames it into place. Rclone
+remotes with a server-side move (local and sftp among them) are written under a
+temporary name ending in `.partial` and moved into place. Rclone remotes without
+one are written in place: where such a remote shows a file while it is still
+being written, a killed upload can leave a truncated object under its name,
+which a later backup takes for complete. A leftover `.partial` file is ignored
+and can be deleted.
+
 Legacy S3 configuration via `s3.*` fields (endpoint, bucket, prefix, etc.) is
 still supported for backward compatibility. `storage_url` takes precedence if
 both are set.
@@ -435,6 +488,7 @@ For an implementation-level view of the internals — the data model, the
 
 ```
 <bucket>/<prefix>/
+├── vaultik-destination.txt     # Marker written by every backup
 ├── blobs/
 │   └── <aa>/<bb>/<full_blob_hash>
 └── metadata/
@@ -443,6 +497,15 @@ For an implementation-level view of the internals — the data model, the
         └── manifest.json.zst   # Unencrypted blob list (for pruning)
 ```
 
+* `vaultik-destination.txt` holds one fixed line of text, with no host
+  name, path or time. While the local index holds snapshots, a
+  destination without it is treated as not present: `snapshot create`
+  refuses to write to it, `prune` and `snapshot purge` fail, and
+  `snapshot list` and `snapshot remove` warn, as for a destination that
+  cannot be listed. This keeps an unplugged volume's empty mount point
+  from being taken for a destination whose snapshots are all gone. Mount
+  the volume if it is removable; if the destination was emptied on
+  purpose, run `vaultik database delete` and back up again.
 * Blobs are two-level directory sharded using the first 4 hex chars of the blob hash
 * `db.zst.age` is a binary SQLite database (zstd compressed, age encrypted)
   containing all file metadata, chunk mappings, and relationships for the snapshot
@@ -530,14 +593,14 @@ complete annotated example also lives in
 
 | Field | Default | Description |
 |-------|---------|-------------|
-| `age_recipients` | (required) | Age public keys for encryption |
+| `age_recipients` | (required by `snapshot create`) | Age public keys for encryption. Other commands run without one, so a machine that only restores can leave it empty |
 | `age_secret_key` | (unset) | Age private key for decryption (`snapshot restore`, `snapshot verify --deep`). Setting it in the config file places the private key on the backed-up host, defeating the public-key-only design (see "why" above). Prefer the `VAULTIK_AGE_SECRET_KEY` environment variable, supplied only on the machine you restore from. |
 | `snapshots` | (required) | Named snapshot definitions with paths and excludes |
 | `storage_url` | | Storage backend URL (`s3://`, `file://`, `rclone://`) |
 | `s3.*` | | Legacy S3 configuration (endpoint, bucket, credentials) |
 | `exclude` | | Global exclude patterns (applied to all snapshots) |
 | `chunk_size` | `10MB` | Average chunk size for content-defined chunking |
-| `blob_size_limit` | `10GB` | Maximum blob size before splitting. Must be at least four times `chunk_size` (the largest chunk the chunker can emit), otherwise a single-chunk blob could exceed the limit |
+| `blob_size_limit` | `10GB` | Maximum blob size before splitting. Must be at least four times `chunk_size` (the largest chunk the chunker can emit), otherwise a single-chunk blob could exceed the limit. A backup needs free temporary space, because each blob is written whole to a temporary file before it is uploaded (up to about `blob_size_limit`; an rclone destination that cannot stream uploads needs about twice that) and the metadata export writes copies of the local index. Temporary files go to `$TMPDIR` (default `/tmp`); with `TMPDIR` unset, SQLite writes one of those copies to `/var/tmp` |
 | `compression_level` | `3` | zstd compression level (1-19) |
 | `hostname` | system hostname | Hostname used in snapshot IDs |
 | `index_path` | platform data dir | Local SQLite index path |
@@ -645,8 +708,8 @@ Work planned after 1.0. Loosely ordered by priority.
 ## output style
 
 Every command's user-facing output is governed by `internal/ui`, in one
-of two ways. Color is enabled when stdout is a TTY and the `NO_COLOR`
-environment variable is unset (https://no-color.org/).
+of two ways. Color is enabled when the stream written to is a TTY and
+the `NO_COLOR` environment variable is unset (https://no-color.org/).
 
 * **Status, progress, warnings, and errors** go through the `internal/ui`
   message methods below: marker-prefixed, colored on a TTY, and — except
@@ -656,24 +719,26 @@ environment variable is unset (https://no-color.org/).
   `config init`, `config set`, and `database delete`.
 * **The data a command exists to produce** is written plain, with no
   marker and no color, because a marker would corrupt a table or a
-  parsed document. This covers the `version`, `info`, and `remote info`
-  reports, the `snapshot list` table, `config get` values, and every
-  `--json` document. `--quiet` silences the human reports and tables
-  (`version`, `info`, `remote info`, `snapshot list`) but never the
-  machine-consumed `config get` value or the `--json` documents, which a
-  script depends on. The `database delete` confirmation prompt is also
-  written this way and always shown: it is an interactive exchange the
-  operator must see.
+  parsed document. This covers the `version`, `info`, `remote info` and
+  `snapshot verify` reports, the `snapshot list` table, `config get`
+  values, and every `--json` document. `--quiet` silences the human
+  reports and tables (`version`, `info`, `remote info`, `snapshot
+  verify`, `snapshot list`) but never the machine-consumed `config get`
+  value or the `--json` documents, which a script depends on. The
+  `database delete` confirmation prompt is also written this way and
+  always shown: it is an interactive exchange the operator must see.
 
-`internal/ui` writes to stdout; it is the output the user asked for.
-Structured log records are a different thing and go through
-`internal/log`, which writes to stderr (see "stdout and stderr" above).
+`internal/ui` writes to stdout; it is the output the user asked for. The
+exceptions are the startup banner and the error a failed command ends
+with, which go to stderr. Structured log records are a different thing
+and go through `internal/log`, which writes to stderr (see "stdout and
+stderr" above).
 
 Message classes:
 
 | Class | Marker | Alignment | Use for |
 |-------|--------|-----------|---------|
-| Banner | none | column 0 | The startup line printed once per invocation |
+| Banner | none | column 0 | The startup line printed once per invocation, on stderr |
 | Begin | `》` (white) | column 0 | An operation is about to start (present-continuous verb) |
 | Complete | `》` (green) | column 0 | An operation just finished (past-tense verb) |
 | Info | `》` (white) | column 0 | Neutral status update |
@@ -728,12 +793,11 @@ regardless of color setting (emoji are not color).
 ## requirements
 
 * Go 1.26 or later
-* Docker, with a reachable daemon, to lint, check, or commit:
-  `script/lint` lints by building `Dockerfile.lint`, which runs the
-  digest-pinned `golangci-lint` image as a build step, and `make check`
-  and the pre-commit hook both run it. A `golangci-lint` installed on
-  `PATH` is not a substitute and is never used on a host, whatever its
-  version.
+* Docker, with a reachable daemon, to test, lint, check, or commit:
+  `script/test` and `script/lint` build the `test` and `lint` phases of
+  the `Dockerfile`, and `make check` and the pre-commit hook both run
+  them. A `golangci-lint` installed on `PATH` is not a substitute and is
+  never used on a host, whatever its version.
 * S3-compatible object storage (or local filesystem, or rclone remote)
 
 ## development workflow
@@ -764,17 +828,20 @@ standard: normalized scripts in `script/` are the entrypoints for the
 development workflow, and the Makefile targets are thin shims that call
 them. We provide:
 
-* `script/bootstrap` — install all development dependencies (go, Go
-  module download). It deliberately does not install `golangci-lint`;
-  see `script/lint` below.
+* `script/bootstrap` — install all development dependencies (Go, Go
+  module download). A host without Go gets the `go.mod` version through
+  `script/install-go`, in `.tool/go`, which `script/bootstrap` itself,
+  the `Makefile`, `script/fmt`, `script/fmt-check`, `script/precommit`
+  and `script/release` add to their `PATH`. It
+  deliberately does not install `golangci-lint`; see `script/lint`
+  below.
 * `script/setup` — make a fresh clone ready for development: runs
   `script/bootstrap`, then `script/install-precommit`
 * `script/projectname` — print the project name (used for the Docker
   image tag)
 * `script/version` — print the version string to bake into the binary.
-  The `Makefile`'s `LDFLAGS` call this, and `script/docker` and
-  `script/cibuild` pass its output to the image build. See
-  [releasing](#releasing) for the rules.
+  The `Makefile`'s `LDFLAGS` call this. See [releasing](#releasing) for
+  the rules.
 * `script/install-goreleaser` — install the pinned `goreleaser` into
   `.tool/bin` from a sha256-verified release archive. Idempotent, and
   called by `script/bootstrap`; the release workflow calls it directly
@@ -782,102 +849,60 @@ them. We provide:
   `script/bootstrap` insists on.
 * `script/install-go` — install the Go toolchain named by `go.mod`'s
   `go` directive into `.tool/go` from a sha256-verified `go.dev`
-  archive, and put it on `PATH`. Idempotent. Called only by the release
-  workflow, which needs a host Go for `goreleaser` to shell out to;
-  nothing else on the release runner does. `actions/setup-go` is not
-  used because it verifies the downloaded toolchain against no value in
-  this repo. Bumping Go edits `go.mod`, the checksum in this script, and
-  the `Dockerfile` `golang` digest together.
+  archive, for Linux or macOS on amd64 or arm64. Idempotent. On a CI
+  runner it also puts `.tool/go/bin` on `PATH` for the steps that
+  follow. Called by the release workflow, which needs a host Go for
+  `goreleaser` to shell out to, and by `script/bootstrap` on a host
+  without Go. `actions/setup-go` is not used because it verifies the
+  downloaded toolchain against no value in this repo. Bumping Go edits
+  `go.mod`, the checksums in this script, and the two `golang` digests
+  in the `Dockerfile` together.
 * `script/release` — cross-compile and publish the release artifacts
   with the pinned `goreleaser`. Refuses a `goreleaser` on `PATH` whose
-  version is not the pinned one, on the same reasoning as `script/lint`.
+  version is not the pinned one, because a different version would build
+  a different release from the same tag.
 * `script/release-snapshot` — the same build with no publishing and no
   tagging, into `./dist`
-* `script/test` — run the test suite (verbose rerun on failure). This
-  runs *everything*: there is no separate integration target and no
-  build-tagged subset held back, so the full round-trip tests in
-  `internal/vaultik/integration_test.go` run on every invocation. It
-  passes `-count=1`, which disables Go's test result cache. That is
-  deliberate and it is not free: on this repo's suite it costs about 11
-  seconds on every repeat run (measured, back to back: 0.4s cached
-  versus 11.6s with `-count=1`). That is the price of the run meaning
-  anything, because without it an unchanged package prints
-  `ok <pkg> (cached)`, which is indistinguishable from a package that
-  really ran, so the whole suite can report a full set of `ok` lines in
-  under half a second having executed nothing. The `-timeout` is a hang
-  backstop rather than a performance budget — it applies per test binary
-  to test execution only, not to compilation — and is set well above the
-  slowest package's measured runtime. Its 120s value deliberately
-  diverges from the 30s `REPO_POLICIES.md` mandates; the reasoning is in
-  the comment in the script, and issue #101 proposes amending the policy
-  text.
-* `script/lint` — lint by building `Dockerfile.lint`, which runs
-  `golangci-lint run --config .golangci.yml ./...` as a build step
-  inside the digest-pinned `golangci-lint` image, so a successful build
-  *is* a clean lint. Nothing lints on the host, at any version, ever;
-  the script requires Docker and fails loudly rather than falling back
-  to a `golangci-lint` on `PATH`. That `FROM` line is the single source
-  of truth for the linter version — bump it there and nowhere else.
-
-  It takes no arguments, because a build step has no command line to
-  pass flags to, and it passes a fresh `--build-arg CHECK_EPOCH` on
-  every invocation so the lint layer cannot be replayed from cache (see
-  `script/cibuild` below for what that mechanism defends against). To
-  watch the linter execute, run it as
-  `BUILDKIT_PROGRESS=plain script/lint` and check that the lint layer
-  says `RUN … golangci-lint` rather than `CACHED`.
-
-  One container per run means one lint cache and one `golangci-lint`
-  lock per run, both private to it and discarded with it, so concurrent
-  runs on one host cannot contaminate or block each other.
+* `script/test` — run the test suite by building the `test` phase of
+  the `Dockerfile` (verbose rerun on failure). This runs *everything*:
+  there is no separate integration target and no build-tagged subset
+  held back, so the full round-trip tests in
+  `internal/vaultik/integration_test.go` run on every invocation. The
+  90s `-timeout` is a hang backstop rather than a performance budget; it
+  applies per test binary, to test execution only.
+* `script/lint` — lint by building the `lint` phase of the
+  `Dockerfile`, which runs `golangci-lint config verify` and then
+  `golangci-lint run --config .golangci.yml ./...` as build steps in
+  the digest-pinned `golangci-lint` image. Nothing lints on the host.
+  That `FROM` line is the only pin of the linter version, and it changes
+  in the same commit as a re-vendored `.golangci.yml`.
 * `script/lint-fix` — apply the linter's autofixes (rewrites files),
-  using the same pinned image, parsed out of `Dockerfile.lint`. It
-  cannot be a build step, because fixes have to land in the worktree, so
-  it bind-mounts the tree into a `docker run` and therefore needs a
-  *local* daemon. It is a developer convenience and never a gate: no
-  gate reads its exit status. Run `make lint` afterwards to find out
-  whether the tree is clean.
+  using the same pinned image, parsed out of the `lint` phase's `FROM`
+  line. It cannot be a build step, because fixes have to land in the
+  worktree, so it bind-mounts the tree into a `docker run` and therefore
+  needs a *local* daemon. It is a developer convenience and never a
+  gate: no gate reads its exit status. Run `make lint` afterwards to
+  find out whether the tree is clean.
 * `script/fmt` — format all code (writes)
-* `script/fmt-check` — check formatting (read-only)
+* `script/fmt-check` — check formatting (read-only). It runs `gofmt` on
+  the host, over every Go file outside `.tool`.
 * `script/check` — run `script/test`, `script/lint`, and
-  `script/fmt-check`. This is authoritative *because* `script/lint`
-  builds `Dockerfile.lint`: a local `make check` and CI cannot disagree
-  about lint findings.
+  `script/fmt-check`.
 * `script/docker` — build the Docker image tagged via
-  `script/projectname`. Passes a fresh `--build-arg CHECK_EPOCH` for the
-  same reason `script/cibuild` does, so a local image build cannot be
-  green on checks it replayed from cache. It builds the *product* image
-  only, and the product `Dockerfile` has no lint stage, so it does not
-  lint: a green here means formatted, tested, and it compiles.
-* `script/cibuild` — CI entrypoint, and the full gate. Two builds, in
-  order: `Dockerfile.lint` (the linter, as a build step) and then
-  `Dockerfile` (`make fmt-check` and `make test` in its builder stage,
-  then the product image). Either failing fails the script. It runs the
-  checks in the same containers CI does, from a clean copy of the tree,
-  so it also catches anything that depends on host state.
-  `.gitea/workflows/check.yml` runs it on every push to `main` and
-  `next` and on every pull request against either.
+  `script/projectname`, stamped with the version
+  `git describe --tags --always --dirty` gives on the host, or `unknown`
+  outside a git checkout. The image's build stage depends on the `lint`
+  and `test` phases, so this lints and tests too.
+* `script/cibuild` — CI entrypoint: runs `script/bootstrap`,
+  `script/check`, and then the same image build as `script/docker`.
+  `.gitea/workflows/check.yml` runs it on every push.
 
-  It passes a fresh `--build-arg CHECK_EPOCH` to each build, unique per
-  invocation, which both files declare immediately above their check
-  `RUN`s and expand into each check command. Those layers are keyed on
-  that value, so a new value re-runs them even on a byte-identical tree,
-  and a green from this script means the checks executed. Dependency and
-  module layers sit above the `ARG` and still cache, so a build is not
-  cold.
-
-  A `docker build -f Dockerfile.lint .` that supplies no `CHECK_EPOCH`
-  fails rather than lying. An unset `ARG` is an empty string and an
-  empty string is a stable cache key, so without a guard such a build
-  would serve the lint layer from cache, execute nothing, and still exit
-  0. `Dockerfile.lint` therefore asserts the value is non-empty before
-  running anything, and because failed steps are never cached that
-  assertion fires on every invocation rather than once. The product
-  `Dockerfile` has no such guard, because a plain `docker build .` must
-  succeed: without `CHECK_EPOCH`, rebuilding an unchanged checkout
-  replays its check layers from cache. Use `script/lint`,
-  `script/docker` or `script/cibuild`, which pass the arg, when the
-  checks must run.
+  Every `docker build` in these scripts passes `--no-cache`, because on
+  an unchanged tree a cached check layer is replayed without running and
+  the build still exits 0. A plain `docker build .` is therefore no
+  evidence that the checks ran. The cost is that `script/cibuild` runs
+  the `lint` and `test` phases twice: once in `script/check` and again
+  in the image build.
 * `script/precommit` — pre-commit gate: `go mod tidy` + `go fmt` (must
   not change files), then `script/check`
 * `script/install-precommit` — install the git pre-commit hook that
@@ -889,8 +914,8 @@ them. We provide:
 
 The version a binary reports comes from git, not from a constant in a
 file. It is `git describe --tags --always --dirty`, which
-`script/version` runs for the `Makefile`, `script/docker` and
-`script/cibuild`:
+`script/version` runs for the `Makefile`, and `script/docker` and
+`script/cibuild` run themselves:
 
 * `HEAD` is exactly on a tag → that tag, such as `v1.0.0`.
 * a commit after a tag → `<tag>-<N>-g<short sha>`.
@@ -901,15 +926,17 @@ file. It is `git describe --tags --always --dirty`, which
 A `docker build .` of a clone, with no build arguments, runs the same
 `git describe` (without `--dirty`) on the `.git` in its build context,
 so it stamps the same value for a clean commit; the build fails if the
-context carries `.git` and no version comes out. A binary built without
-git metadata reports `dev`.
+context carries `.git` and no version, commit or commit date comes out.
+A binary built without
+git metadata reports `dev`, or `unknown` when `script/docker` or
+`script/cibuild` built it outside a git checkout.
 
 `goreleaser` stamps a release binary with the tag minus its leading
 `v`, so the tag `v1.0.0` produces `vaultik 1.0.0`, matching the archive
 name `vaultik_1.0.0_linux_amd64.tar.gz`. `goreleaser --snapshot` stamps
 `dev-<12 chars of the commit sha>` rather than inventing the next patch
 number. `vaultik version` calls a build a development build when its
-version is `dev`, `dev-<sha>`, the short commit sha or
+version is `dev`, `unknown`, `dev-<sha>`, the short commit sha or
 `<tag>-<N>-g<short sha>`, with or without `-dirty`; only a plain tag,
 such as `v1.0.0` or `1.0.0`, is a release. If `script/version` cannot
 be run at all, `make` stops with an error instead of building an
@@ -943,14 +970,14 @@ It is passed to `goreleaser` as `GITEA_TOKEN`. The runner's automatic
 token is deliberately not used: it is not guaranteed to carry release
 write access.
 
-The Go toolchain that compiles the released binaries comes from an
-`actions/setup-go` step pinned by commit sha, reading its version from
-`go.mod` (currently `1.26.1`, the same version the `Dockerfile` builder
-stage pins by digest). `goreleaser` shells out to `go` for every
+The Go toolchain that compiles the released binaries is installed by
+`script/install-go`, which downloads the version named by `go.mod`
+(currently `1.26.1`, the same version the `Dockerfile` builder stage
+pins by digest) and refuses the archive unless its sha256 matches the
+value committed in the script. `goreleaser` shells out to `go` for every
 cross-compile, so without that step the release would either fail
 outright or ship binaries built by whatever unpinned toolchain the
-runner happened to carry — the one unpinned thing in an otherwise
-hash-pinned release path.
+runner happened to carry.
 
 To rehearse the whole build without publishing or tagging anything:
 

REPO_POLICIES.md

@@ -1,6 +1,6 @@
 ---
 title: Repository Policies
-last_modified: 2026-07-06
+last_modified: 2026-10-04
 ---
 
 This document covers repository structure, tooling, and workflow standards. Code
@@ -60,17 +60,28 @@ style conventions are in separate documents:
   prerequisite since nvm requires bash. yarn is then pinned via
   `corepack prepare yarn@<version> --activate`. Never install "latest" or "lts";
   always exact versions. `script/cibuild` runs the CI build: it changes to the
-  repo root and runs `docker build .`; the Gitea workflow calls it. Four further
-  scripts are our own extensions to the standard: `script/check` runs
-  `script/test`, `script/lint`, and `script/fmt-check`; `script/precommit` is
-  what the git pre-commit hook runs, and it calls `script/check`;
-  `script/install-precommit` installs the git pre-commit hook (the `make hooks`
-  target shims to it); and `script/projectname` (literally that filename) simply
-  outputs the project's name. Scripts that need the name call
-  `script/projectname` — e.g. `script/docker` assembles its image tag from it —
-  so those scripts stay byte-identical across all repos. Repo-type-specific
-  pre-commit extras (e.g. `go mod tidy` verification in Go repos) belong in
-  `script/precommit`, not in the hook itself. Model scripts are at
+  repo root, runs `script/bootstrap`, runs `script/check`, and builds the image
+  with the version; the Gitea workflow calls it. **`script/cibuild` runs
+  `script/bootstrap` first**, because the workflow checks out the repo and runs
+  nothing else, while `script/fmt-check` runs the formatter on the host: on a
+  pristine checkout with nothing installed the run dies there, after the
+  containerised gates have passed. **The bootstrap alone is not enough**:
+  `script/bootstrap` installs node and yarn under nvm and leaves neither on the
+  `PATH` of the shell that called it, so a bare `yarn` still exits 127. The host
+  entrypoints that need yarn — `script/fmt` and `script/fmt-check` — therefore
+  source nvm for the pinned node version before invoking it, exactly as
+  `script/bootstrap`'s own install step does. A runner carrying nothing but
+  docker and git then gets through `script/check`. Four further scripts are our
+  own extensions to the standard: `script/check` runs `script/test`,
+  `script/lint` and `script/fmt-check`; `script/precommit` is what the git
+  pre-commit hook runs, and it calls `script/check`; `script/install-precommit`
+  installs the git pre-commit hook (the `make hooks` target shims to it); and
+  `script/projectname` (literally that filename) simply outputs the project's
+  name. Scripts that need the name call `script/projectname` — e.g.
+  `script/docker` assembles its image tag from it — so those scripts stay
+  byte-identical across all repos. Repo-type-specific pre-commit extras (e.g.
+  `go mod tidy` verification in Go repos) belong in `script/precommit`, not in
+  the hook itself. Model scripts are at
   `https://git.eeqj.de/sneak/prompts/raw/branch/main/script/<name>`. The README
   must document the provided scripts in an **Entrypoints** section (see the
   README requirements below).
@@ -89,87 +100,198 @@ style conventions are in separate documents:
   contributor should be able to understand the entire development workflow by
   reading the Makefile.
 
-- Every repo should have a `Dockerfile`. All Dockerfiles must run `make check`
-  as a build step so the build fails if the branch is not green. For non-server
-  repos, the Dockerfile should bring up a development environment and run
-  `make check`. For server repos, `make check` should run as an early build
-  stage before the final image is assembled. Dockerfiles install development
-  prerequisites by running `script/bootstrap` rather than duplicating installs
-  inline; COPY `script/` and the dependency manifests (`package.json` +
-  `yarn.lock`, `go.mod` + `go.sum`, etc.) before running it so the bootstrap
-  layer stays cached until dependencies change.
+- Every repo should have a `Dockerfile`, and it carries the repo's gates: a
+  `lint` phase and a `test` phase, with the final stage depending on both so the
+  image cannot be built unless they pass. For non-server repos the final stage
+  brings up a development environment; for server repos it is the runtime image.
+  The gate phases and the build stage start from their pinned base images and
+  install what those images lack either inline, as the canonical Go `Dockerfile`
+  below does for `git`, or by running `script/bootstrap`, as the `prompts`
+  repo's own `Dockerfile` does for its yarn packages. The development
+  environment stage installs development prerequisites by running
+  `script/bootstrap` rather than duplicating its installs inline. A stage that
+  runs `script/bootstrap` COPYs `script/` and the dependency manifests
+  (`package.json` + `yarn.lock`, `go.mod` + `go.sum`, etc.) before running it.
 
-- **Dockerfiles must use a separate lint stage for fail-fast feedback.** Go
-  repos use a multistage build where linting runs in an independent stage based
-  on the `golangci/golangci-lint` image (pinned by hash). This stage runs
-  `make fmt-check` and `make lint` before the full build begins. The build stage
-  then declares an explicit dependency on the lint stage via
-  `COPY --from=lint /src/go.sum /dev/null`, which forces BuildKit to complete
-  linting before proceeding to compilation and tests. This ensures lint failures
-  surface in seconds rather than minutes, without blocking on dependency
-  download or compilation in the build stage.
+- **Linting and testing run in Docker, as phases of the `Dockerfile`.** There is
+  no separate lint file. `script/lint` and `script/test` each build one phase
+  and nothing else:
 
-    The standard pattern for a Go repo Dockerfile is:
+    ```sh
+    docker build --no-cache --target lint -t "$(script/projectname)-lint" .
+    docker build --no-cache --target test -t "$(script/projectname)-test" .
+    ```
+
+    **A stage that is not the last one in the file is built only when the final
+    stage's chain depends on it, or when `--target` names it.** That is why the
+    two gates are always invoked by name here, and why the final stage carries a
+    `COPY --from=` of a harmless file from each of them: without that edge a
+    plain `docker build .` builds the last stage alone and exits 0 having linted
+    and tested nothing.
+
+    **Every `docker build` in `script/` is tagged**, here and in
+    `script/cibuild` and `script/docker`. An untagged build leaves a dangling
+    image behind on every invocation, on every developer host and every CI
+    runner; a tagged one replaces the previous image.
+
+    Inside a phase the tool is invoked directly — `golangci-lint`, `go test`,
+    `eslint`, `prettier` — never through `make lint` or `script/test`, which are
+    themselves a `docker build` and would recurse into a daemon that does not
+    exist in a build step. Formatting is the exception and stays on the host:
+    `script/fmt` writes the working tree, and `script/fmt-check` is its
+    read-only twin.
+
+    **No lint verdict may come from a host invocation of the linter.** On a
+    shared host golangci-lint reads a result cache keyed on file content rather
+    than location, so a second checkout of the same content is served the first
+    one's findings, and a host-global lock in `$TMPDIR` makes concurrent runs
+    exit non-zero with `parallel golangci-lint is running` — a status a caller
+    cannot tell from real findings. Both have produced wrong verdicts in this
+    org, in both directions. A container has its own cache, its own `TMPDIR` and
+    a digest-pinned binary, so neither is reachable.
+
+- **Any build that runs checks is built with `--no-cache`.** Docker invalidates
+  a `COPY` layer only when the copied content changes, so on an unchanged tree
+  the check `RUN` is served from cache, nothing executes, and the build still
+  exits 0. Every `docker build` in `script/` therefore passes `--no-cache`:
+  `script/lint`, `script/test`, `script/cibuild` and `script/docker` are the
+  four, and there is no fifth — `script/check` runs the two gate phases and
+  `script/fmt-check`, and builds no image of its own. A bare `docker build .` is
+  not evidence that anything ran: a sub-second build reporting success is a
+  cache hit, not a result. Never invalidate by pruning — `docker builder prune`
+  and friends destroy a build cache shared with every other build on the host.
+  When a check is added or changed, prove it works by planting a defect it must
+  catch and watching the run fail on it, then revert the defect. A green run
+  alone shows neither that the check ran nor that it covers what it should.
+
+- **The gate phases are separate stages, and the build stage depends on both.**
+  The lint phase is based on the `golangci/golangci-lint` image (pinned by
+  hash), so lint failures surface in seconds rather than after a full compile,
+  and the test phase is based on the Debian Go image. The canonical Go repo
+  `Dockerfile`:
 
     ```dockerfile
-    # Lint stage — fast feedback on formatting and lint issues
+    # Lint phase
     # golangci/golangci-lint:v2.x.x, YYYY-MM-DD
     FROM golangci/golangci-lint@sha256:... AS lint
     WORKDIR /src
     COPY go.mod go.sum ./
     RUN go mod download
     COPY . .
-    RUN make fmt-check
-    RUN make lint
+    RUN golangci-lint run --config .golangci.yml ./...
 
-    # Build stage
-    # golang:1.x-alpine, YYYY-MM-DD
-    FROM golang@sha256:... AS builder
+    # Test phase. -race needs cgo and so a C compiler, which the Debian Go
+    # image ships and the alpine one does not.
+    # golang:1.x, YYYY-MM-DD
+    FROM golang@sha256:... AS test
     WORKDIR /src
-
-    # Force BuildKit to run the lint stage before proceeding
-    COPY --from=lint /src/go.sum /dev/null
-
     COPY go.mod go.sum ./
     RUN go mod download
     COPY . .
-    RUN make test
+    RUN go test -timeout 90s -race -cover ./... || \
+        { echo "--- Rerunning with -v for details ---"; \
+          go test -timeout 90s -race -v ./...; exit 1; }
 
-    ARG VERSION=dev
-    RUN CGO_ENABLED=0 go build -trimpath \
-        -ldflags="-s -w -X main.Version=${VERSION}" \
-        -o /app ./cmd/app/
+    # Build stage. Nothing is wanted from either phase above; the copies
+    # are what make BuildKit build them first, so this stage cannot run
+    # unless lint and test passed.
+    # golang:1.x-alpine, YYYY-MM-DD
+    FROM golang@sha256:... AS builder
+    COPY --from=lint /src/go.sum /dev/null
+    COPY --from=test /src/go.sum /dev/null
+    RUN apk add --no-cache git
+    # A tar-stream context keeps the sender's file owners, which git refuses.
+    RUN git config --system --add safe.directory /src
+    WORKDIR /src
+    COPY go.mod go.sum ./
+    RUN go mod download
+    COPY . .
 
-    # Runtime stage
+    # The VERSION build arg when one is given, otherwise
+    # `git describe --tags --always` on the .git in the build context. With
+    # .git present, a version that is still empty, dev or unknown fails the
+    # build: git is missing or could not read the checkout.
+    ARG VERSION
+    RUN VERSION="${VERSION:-$(git describe --tags --always)}"; \
+        if [ -e .git ]; then \
+            case "$VERSION" in ""|dev|unknown) \
+                echo "version is '$VERSION' although .git is present" >&2; \
+                exit 1 ;; \
+            esac; \
+        fi; \
+        CGO_ENABLED=0 go build -trimpath \
+            -ldflags="-s -w -X main.Version=${VERSION}" \
+            -o /app ./cmd/app/
+
+    # Runtime stage, and the last one
     FROM alpine@sha256:...
     COPY --from=builder /app /usr/local/bin/app
     ENTRYPOINT ["app"]
     ```
 
     Key points:
-    - The lint stage uses the `golangci/golangci-lint` image directly (it
-      includes both Go and the linter), so there is no need to install the
-      linter separately.
-    - `COPY --from=lint /src/go.sum /dev/null` is a no-op file copy that creates
-      a stage dependency. BuildKit runs stages in parallel by default; without
-      this line, the build stage would not wait for lint to finish and a lint
-      failure might not fail the overall build.
+    - The lint phase uses the `golangci/golangci-lint` image directly (it has
+      both Go and the linter), so nothing needs installing.
+    - `COPY --from=<phase> /src/go.sum /dev/null` is a no-op copy whose only
+      purpose is the ordering edge. BuildKit runs stages in parallel by default,
+      and a stage nothing depends on is not built at all, so without these two
+      lines a red gate would not fail the build.
+    - Keep the runtime stage last, and if you add a stage after it, give it the
+      same two copies. A plain `docker build .` builds the last stage's chain
+      and nothing else.
     - If the project uses `//go:embed` directives that reference build artifacts
-      (e.g. a web frontend compiled in a separate stage), the lint stage must
+      (e.g. a web frontend compiled in a separate stage), the lint phase must
       create placeholder files so the embed directives resolve. Example:
       `RUN mkdir -p web/dist && touch web/dist/index.html web/dist/style.css`.
-      The lint stage should not depend on the actual build output — it exists to
-      fail fast.
-    - If the project requires CGO or system libraries for linting (e.g.
-      `vips-dev`), install them in the lint stage with `apk add`.
-    - The build stage runs `make test` after compilation setup. Tests run in the
-      build stage, not the lint stage, because they may require compiled
-      artifacts or heavier dependencies.
+    - If the project requires CGO or system libraries for linting, install them
+      in the lint phase. The `golangci/golangci-lint` image is Debian-based and
+      has no `apk`, so install with `apt-get` under the Debian package name
+      (`libvips-dev`, where alpine says `vips-dev`), and delete the package
+      lists in the same `RUN`, so the layer does not keep them:
+
+        ```dockerfile
+        RUN apt-get update \
+            && apt-get install -y --no-install-recommends libvips-dev \
+            && rm -rf /var/lib/apt/lists/*
+        ```
+
+    - `.dockerignore` lets `.git` into the build context. It keeps out every git
+      `config` at any depth (`**/.git/config`, `**/.git/modules/**/config`): the
+      repository's own, each submodule's under `.git/modules/`, and that of a
+      submodule keeping its own `.git` directory. `git describe` does not need
+      them, and each can hold a credential: a password in a remote URL, or the
+      token the CI checkout step stores there. A submodule whose name has a
+      `config` segment (`config`, `deploy/config`, `config/lib`) loses its whole
+      git directory to `**/.git/modules/**/config`, and Go's version stamping
+      then fails the build: give it a name without that segment
+      (`git submodule add --name`). The stage that compiles has `git` (the
+      Debian Go image has it; an alpine one needs `apk add --no-cache git`) and
+      takes the version from the `VERSION` build argument when one is given,
+      otherwise from `git describe --tags --always`. That gives the tag on a
+      tagged commit; on a later commit, the tag, the number of commits since it
+      and the short commit (`v1.2.3-4-gabc1234`); and the short commit when no
+      tag is reachable. The stage that compiles also marks its working directory
+      safe for git (`git config --system --add safe.directory /src`): a context
+      sent as a tar stream keeps the sender's file owners, and git refuses a
+      checkout owned by another user, so the version would come out empty.
+      `ARG VERSION` has no default, and the build fails if the context carries
+      `.git` and the version still comes out empty, `dev` or `unknown`. A plain
+      `docker build .` with no build arguments must succeed; a Dockerfile that
+      refuses an empty build argument drops that refusal and keeps the argument.
 
 - Every repo should have a Gitea Actions workflow (`.gitea/workflows/`) that
-  runs `script/cibuild` (which runs `docker build .`) on push. Since the
-  Dockerfile already runs `make check`, a successful build implies all checks
-  pass.
+  runs `script/cibuild` on push, and checks out the repo as its only other step.
+  That script bootstraps, runs the gate phases, and then builds the image, so a
+  successful run means every check passed; a bare `docker build .` does not
+  carry the same guarantee, because its gate phases may come from the cache. The
+  image build is uncached and so runs the gate phases a second time. That is the
+  price of the rule above, and it is worth paying: the image that ships is built
+  from a run of its own gates rather than from a cache entry. A separate
+  workflow limited to `main` by a `branches` list under `on: push` cannot be
+  checked by review: to try a change to it, add the feature branch to that list
+  and push, then remove the branch from the list again before merging. Keep any
+  job in it that publishes behind `if: github.ref_name == 'main'`, so the run
+  from the feature branch publishes nothing.
 
 - Use platform-standard formatters: `black` for Python, `prettier` for
   JS/CSS/Markdown/HTML, `go fmt` for Go. Always use default configuration with
@@ -189,14 +311,21 @@ style conventions are in separate documents:
   module under test to verify it compiles/parses. There is no excuse for
   `make test` to be a no-op.
 
-- `make test` must complete in under 20 seconds. Add a 30-second timeout in the
-  Makefile.
+- `make test` must complete in under 60 seconds. That is the hard cap, and a
+  suite that exceeds it fails. Under 20 seconds is the target. A suite between
+  20 and 60 seconds is still green, but the overage must be filed as an
+  improvement bug against that repo. Add a 90-second timeout to the test
+  invocation (`go test -timeout 90s`). The backstop deliberately sits above the
+  hard cap so that it catches a genuinely hung test rather than a merely slow
+  one.
 
-- **`make test` should use the conditional verbose rerun pattern.** Run tests
-  without `-v` (verbose) first. If tests fail, automatically rerun with `-v` to
-  show full output. This keeps CI logs and `docker build` output clean on
-  success (just package/suite summaries) while providing full diagnostic detail
-  on failure (every test case, every assertion). The general shell pattern:
+- **The test command should use the conditional verbose rerun pattern.** Run
+  tests without `-v` (verbose) first. If tests fail, automatically rerun with
+  `-v` to show full output. This keeps CI logs and `docker build` output clean
+  on success (just package/suite summaries) while providing full diagnostic
+  detail on failure (every test case, every assertion). The command lives in the
+  `test` phase of the `Dockerfile`, since `script/test` builds that phase; the
+  Makefile form below is the same pattern for any repo-local invocation:
 
     ```makefile
     test:
@@ -209,11 +338,26 @@ style conventions are in separate documents:
 
     ```makefile
     test:
-    	@go test -timeout 30s -race -cover ./... || \
+    	@go test -count=1 -timeout 90s -race -cover ./... || \
     		{ echo "--- Rerunning with -v for details ---"; \
-    		  go test -timeout 30s -race -v ./...; exit 1; }
+    		  go test -count=1 -timeout 90s -race -v ./...; exit 1; }
     ```
 
+    `-count=1` is required on both invocations: it defeats Go's test _result_
+    cache, so neither run can report a stored pass in place of running the
+    tests. It leaves the build cache alone, so it costs the runtime of the suite
+    and no recompilation.
+
+    That cache is Go's own, separate from Docker's layer cache. Go stores a
+    passing result in its cache directory (`GOCACHE`), and when the same tests
+    run again on unchanged code it prints that result, marked `(cached)`,
+    without running them. That matters on a developer's machine, where this
+    target runs and the directory lasts from one run to the next. The `test`
+    phase of the `Dockerfile` needs no `-count=1`: its base image holds no
+    result for this repo's tests and nothing before its `go test` step runs a
+    test, so there is nothing to replay. `--no-cache` (above) is what makes that
+    step run on an unchanged tree.
+
     Python example:
 
     ```makefile
@@ -239,10 +383,84 @@ style conventions are in separate documents:
   must be in `.gitignore`. No exceptions.
 
 - `.gitignore` should be comprehensive from the start: OS files (`.DS_Store`),
-  editor files (`.swp`, `*~`), language build artifacts, and `node_modules/`.
-  Fetch the standard `.gitignore` from
-  `https://git.eeqj.de/sneak/prompts/raw/branch/main/.gitignore` when setting up
-  a new repo.
+  editor files (`.swp`, `*~`), in-repo agent scratch directories (`.claude/`),
+  language build artifacts, and `node_modules/`. Fetch the standard `.gitignore`
+  from `https://git.eeqj.de/sneak/prompts/raw/branch/main/.gitignore` when
+  setting up a new repo. These patterns are written to `.gitignore`'s own
+  semantics, in which an unanchored pattern already matches at every depth; they
+  are not a `.dockerignore` and must not be transplanted into one unmodified.
+
+- **`.dockerignore` does not use `.gitignore` semantics, and copying patterns
+  across unmodified leaves secrets in the build context.** Docker matches with
+  `moby/patternmatcher`: `filepath.Match` semantics plus a `**` extension, so
+  `*` does not cross `/` and a pattern without a leading `**/` is anchored at
+  the build-context root. A `.dockerignore` listing `.env`, `*.pem` and `*.key`
+  therefore excludes only the copies at the repository root, while `config/.env`
+  and `certs/server.key` still reach the context and can land in an image layer
+  — which is more dangerous than a short file with no secret patterns at all,
+  because it reads as solved and stops anyone looking. Give every
+  depth-independent pattern the `**/` prefix and leave only genuinely
+  root-anchored entries unprefixed: `.claude`, and the repo's own host-built
+  binary, written `/myapp` and never `**/myapp`, which would also match
+  `cmd/myapp/` and delete the package directory from the context. Matching is
+  case-sensitive, and an ALL-CAPS twin per pattern still misses `Server.Key`, so
+  secret names use character ranges — `**/*.[kK][eE][yY]`, `**/*.[pP][eE][mM]`,
+  and likewise for `.envrc` and the extensionless SSH keys. Where such a pattern
+  also catches something the build needs, re-include it with a negation
+  (`!docs/example.env`); deleting the pattern reopens the exposure for every
+  other file it covers. Fetch the standard `.dockerignore` from
+  `https://git.eeqj.de/sneak/prompts/raw/branch/main/.dockerignore` and extend
+  it with the repo's own artifacts.
+
+- **In-repo agent scratch belongs in both files, written to each file's own
+  semantics.** `.claude/` holds one worktree per in-flight agent — an entire
+  additional checkout of the repo — so under `COPY . .` the build context
+  inflates by a multiple of the repo and another session's unreviewed work can
+  be copied into an image layer. In `.gitignore` the entry is `.claude/`,
+  unanchored. In `.dockerignore` it is `.claude`, anchored and with **no** `**/`
+  prefix, because the prefixed form would also delete any nested directory of
+  that name from the build. Anchoring carries a known gap that the canonical
+  `.dockerignore` states in its own comment, since consuming repos receive the
+  file and not the tracker: the directory is created in the agent's working
+  directory, so a repo running agents in subdirectories still ships
+  `services/api/.claude/` and must add its own anchored entry there.
+
+- **A plain `docker build .` of a clone stamps the version that
+  `git describe --tags --always` gives**, derived from the `.git` in the build
+  context as the canonical `Dockerfile` above shows. Without its failure check,
+  a missing `git` or an unreadable checkout would leave `-X main.Version=` empty
+  and the build would still exit 0. `script/docker` and `script/cibuild` pass
+  the version they compute on the host; it takes precedence. They do this
+  byte-identically across repos:
+
+    ```sh
+    # Own line: a failing command substitution inside an argument does not
+    # trip `set -e`, so the inline form degrades to an empty constant.
+    version="$(git describe --tags --always --dirty 2>/dev/null || true)"
+    [ -n "$version" ] || version="unknown"
+    docker build --no-cache \
+        --build-arg VERSION="$version" \
+        -t "$(script/projectname)" .
+    ```
+
+    `--always` makes an untagged repo yield an abbreviated commit hash rather
+    than failing, and the `[ -n "$version" ]` line is the single place the
+    fallback is applied — a live check that fires on a build from an export with
+    no `.git` and on a repository with no commits yet. Do not fold it into the
+    substitution as `|| echo unknown`, which makes the guard unreachable. The
+    Dockerfile's side is `ARG VERSION` in the stage that compiles, declared
+    there because `ARG` is stage-scoped; passing `VERSION` to a repo whose
+    Dockerfile declares no such `ARG` is ignored and costs nothing, which is why
+    the scripts stay byte-identical. One consequence for CI: the standard
+    checkout action clones shallow and fetches no tags, so a repo that embeds a
+    tag-derived version must set `fetch-depth: 0` on its checkout step.
+
+- **Verify `.dockerignore` by enumerating the image, not by reading the
+  patterns.** Plant files at the root _and_ at least two directories deep, build
+  a probe image that does `COPY . .`, and list what actually landed
+  (`docker run --rm --entrypoint find IMAGE /app`). The `transferring context`
+  size is not a substitute: a nested secret is a few bytes, and BuildKit
+  transfers only the delta from the previous build.
 
 - **No build artifacts in version control.** Code-derived data (compiled
   bundles, minified output, generated assets) must never be committed to the
@@ -258,9 +476,56 @@ style conventions are in separate documents:
 - Make all changes on a feature branch. You can do whatever you want on a
   feature branch.
 
-- `.golangci.yml` is standardized and must _NEVER_ be modified by an agent, only
-  manually by the user. Fetch from
-  `https://git.eeqj.de/sneak/prompts/raw/branch/main/.golangci.yml`.
+- `.golangci.yml` is standardized. The vendored copy in a consuming repo must
+  _NEVER_ be modified by an agent: fetch it from
+  `https://git.eeqj.de/sneak/prompts/raw/branch/main/.golangci.yml` and keep it
+  byte-identical, so that no repo can quietly loosen its own linting. Linter
+  configuration changes are made to the canonical copy in the `prompts` repo and
+  reach consuming repos by re-vendoring; an agent may open a PR against
+  canonical, which only the user merges. One list is exempt from byte-identity,
+  because it cannot be written once for every repo: the `deny` list of the
+  `test-support` depguard rule, where a repo names its own test-support packages
+  by full import path. A repo adds entries there and changes nothing else, and a
+  re-vendor carries its entries forward. The canonical golangci-lint version is
+  v2.14.0 (released 2026-09-24), pinned as the digest of the lint phase's base
+  image
+  (`golangci/golangci-lint@sha256:ad862ba6b3798cbe0fd9fd7408d498fd74fbd2623a92406b2fd3898faf0bf98f`,
+  which reports `2.14.0 built with go1.27.0 from 114493f9`). A module's `go`
+  directive must not name a newer Go minor version than the one golangci-lint
+  was built with, or golangci-lint refuses to lint it: this release lints
+  `go 1.27.1` but not `go 1.28`. That digest is the only pin, since no repo
+  installs golangci-lint on the host. A repo sets the lint phase digest to the
+  one named here and re-vendors `.golangci.yml` in the same commit, whichever of
+  the two prompted the change: the canonical copy can name linters that an older
+  golangci-lint rejects, and a newer golangci-lint can add linters that
+  `default: all` switches on until the canonical copy disables them.
+
+- **`script/bootstrap` installs a pinned tool by comparing versions, never by
+  testing presence.** An `if ! command -v <tool>; then install; fi` guard tests
+  `PATH` only, so on an already-provisioned machine the pin is inert and a
+  version bump is a silent no-op — while the Dockerfile, installing into a clean
+  image, gets the pinned version, so a local `make check` and `make docker` can
+  disagree about what the tool even is. The canonical form:
+    - compares the installed version against the pin over the **whole** version
+      token; a parser that stops at the first `-` reports `2.12.2` for a host
+      running `2.12.2-rc1` and skips the install;
+    - treats absent, non-zero, empty or unrecognised `--version` output as a
+      mismatch, so the failure direction is a redundant install and never a
+      skipped one;
+    - after installing, re-resolves the binary the way callers do — `hash -r`,
+      then through `PATH`, not through the directory the installer wrote to —
+      and fails naming the resolved path, since an install that a shadowing
+      binary hides succeeds while changing nothing any caller sees;
+    - is actually called, and prints the version on both success paths: a
+      function defined and never invoked has the same exit status and the same
+      empty output as one that worked.
+
+    Keep it POSIX sh: no arrays, no `[[`, no `grep -P`.
+
+    A Go tool a repo needs on the host is installed with `go install` pinned to
+    a commit hash (`go install <package>@<commit hash>`). It is never tracked as
+    a `go.mod` tool dependency or through a `tools.go` file, either of which
+    pulls the tool's own dependencies into the repo's `go.mod` and `go.sum`.
 
 - When pinning images or packages by hash, add a comment above the reference
   with the version and date (YYYY-MM-DD).
@@ -374,12 +639,14 @@ style conventions are in separate documents:
   settings.
 
 - Avoid putting files in the repo root unless necessary. Root should contain
-  only project-level config files (`README.md`, `Makefile`, `Dockerfile`,
-  `LICENSE`, `.gitignore`, `.editorconfig`, `REPO_POLICIES.md`, and
-  language-specific config). Everything else goes in a subdirectory. Canonical
-  subdirectory names:
+  only project-level config files (`README.md`, `AGENTS.md`, `Makefile`,
+  `Dockerfile`, `LICENSE`, `.gitignore`, `.editorconfig`, `REPO_POLICIES.md`,
+  and language-specific config). Everything else goes in a subdirectory.
+  Canonical subdirectory names:
     - `bin/` — executable scripts and tools
-    - `cmd/` — Go command entrypoints
+    - `cmd/` — Go command entrypoints; thin only: one `main.go` per binary whose
+      body is a single call into `internal/` or `pkg/`, no project logic in
+      `cmd/`
     - `configs/` — configuration templates and examples
     - `deploy/` — deployment manifests (k8s, compose, terraform)
     - `docs/` — documentation and markdown (README.md stays in root)
@@ -406,3 +673,7 @@ style conventions are in separate documents:
     - Go: `go.mod`, `go.sum`, `.golangci.yml`
     - JS: `package.json`, `yarn.lock`, `.prettierrc`, `.prettierignore`
     - Python: `pyproject.toml`
+
+- Guidance for coding agents lives in one `AGENTS.md` at the repository root. It
+  is never committed under a file or directory named after one agent tool, such
+  as `CLAUDE.md` or `.claude/`, and never split into separate memory files.

TODO.md

@@ -22,6 +22,363 @@ the tag exists and is exercised; what is left is merging `next` to
 
 # Completed Steps
 
+- 2026-10-13: Stopped `remote info` counting a file under `blobs/` that
+  is not a blob as an orphaned blob
+  ([issue #295](https://git.eeqj.de/sneak/vaultik/issues/295)). A stray
+  file such as `.DS_Store` was reported as an orphaned blob and the
+  report advised running `prune`, which skips such a file and deleted
+  nothing. `remote info` now takes its blob list from the same listing
+  `prune` uses, in the table and in `--json`.
+
+- 2026-10-13: Made `snapshot remove` fail for a snapshot that does not
+  exist ([issue #293](https://git.eeqj.de/sneak/vaultik/issues/293)).
+  The command never checked the ID: it reported the snapshot removed
+  from the local database and from the destination store and exited 0,
+  under `--json`, `--dry-run` and `--local-only` too. An ID that names
+  no snapshot in the local index or on the destination store is now an
+  error; with `--local-only`, the snapshot must be in the local index.
+  The command now reports a removal from either side only when one
+  happened, and `remote_removed` is true only when metadata was deleted.
+
+- 2026-10-12: Bound the local index to the destination an `s3.*` config
+  names ([issue #298](https://git.eeqj.de/sneak/vaultik/issues/298)).
+  Only `storage_url` was checked, so after `s3.bucket` or `s3.prefix`
+  changed, the next backup treated every chunk as already stored,
+  uploaded nothing, and completed a snapshot that could not be restored.
+  Without `storage_url`, the local index is now bound to `s3.endpoint`,
+  `s3.bucket` and `s3.prefix`, and a change is refused as a changed
+  `storage_url` is.
+
+- 2026-10-12: Rejected a retention duration longer than about 292 years
+  ([issue #289](https://git.eeqj.de/sneak/vaultik/issues/289)). The
+  number given to `--older-than` or `--keep-newer-than` was multiplied
+  by the length of its unit with no limit, so from `293y`, `15251w`,
+  `3559mo` or `106752d`, or a sum of parts such as `200y200y`, the
+  result wrapped to a negative duration. The cutoff then lay in the
+  future, every snapshot of the name was deleted, the one just made
+  included, and the command exited 0. Such a duration is now rejected
+  as invalid and nothing is deleted.
+
+- 2026-10-08: Made a backup cancelled under `--skip-errors` stop at once
+  ([issue #286](https://git.eeqj.de/sneak/vaultik/issues/286)). After
+  Ctrl-C or SIGTERM, phase 2 treated the cancellation error from each
+  remaining file like an unreadable file: it opened the file, printed an
+  error line for it, counted it as failed and went on to the next one.
+  The run now stops at the first file after the cancellation, and no
+  file is counted as failed because of it.
+
+- 2026-10-08: Made `remote nuke` delete the `.partial` files that
+  uploads cut off part-way leave on the destination store
+  ([issue #281](https://git.eeqj.de/sneak/vaultik/issues/281)). The
+  file and rclone listings skip such a file, so the command left it in
+  place and still reported the store empty. It now removes them under
+  `metadata/` and `blobs/` as its last step.
+
+- 2026-10-08: Made a local index error while recording a directory or
+  symlink stop a backup under `--skip-errors`
+  ([issue #284](https://git.eeqj.de/sneak/vaultik/issues/284)). Phase 2
+  only records such an entry in the local index, since it has no data
+  to open or read, but an error doing so was skipped like an unreadable
+  file. The snapshot then completed without the entry, and a restore
+  did not recreate it. The error now stops the backup, as it does
+  without the flag.
+
+- 2026-10-08: Counted a file that a backup could not store as failed
+  ([issue #280](https://git.eeqj.de/sneak/vaultik/issues/280)). A file
+  that phase 1 counted and phase 2 could not open, because it was
+  unreadable under `--skip-errors` or removed in between, was reported
+  in the summary as unchanged with its bytes as backed up, and the
+  `snapshots` row's `file_count` and `total_size` included it. The
+  summary now counts it as failed, and its data total and the row leave
+  it out.
+
+- 2026-10-08: Made `remote info` report a snapshot's blob count and
+  blob size as unknown when its manifest cannot be read
+  ([issue #272](https://git.eeqj.de/sneak/vaultik/issues/272)). The
+  orphan figures were already unknown in that case, but the snapshot's
+  row still gave 0 blobs and 0 B, in the table and in `--json`. The row
+  now reads `unknown` and `--json` gives `null`. A directory with no
+  manifest still shows 0, since the orphan figures count its blobs as
+  orphaned.
+
+- 2026-10-08: Kept the progress line of a snapshot with more than one
+  path within 100%
+  ([issue #271](https://git.eeqj.de/sneak/vaultik/issues/271)). The
+  bytes and files processed counted every path, but the totals they
+  were divided by held only the current path's, so a second path
+  smaller than the first showed more than 100% and an ETA of `unknown`.
+  The totals now add up over the paths scanned so far. The rate behind
+  the ETA restarts when each path's scan phase ends, so that phase does
+  not lower the rate while the path is processed; until then the rate
+  is the previous path's.
+
+- 2026-10-08: Made a second `snapshot create` of one name succeed when
+  it starts in the same second as the first
+  ([issue #270](https://git.eeqj.de/sneak/vaultik/issues/270)). The
+  timestamp in a snapshot ID is in whole seconds, so the second run got
+  the first run's ID and failed with `UNIQUE constraint failed:
+  snapshots.id`. When the local index already has a snapshot with the
+  ID, the create now waits a second and takes a new timestamp.
+
+- 2026-10-07: Documented that `--json` skips the confirmation prompt of
+  `snapshot remove` and `prune`
+  ([issue #268](https://git.eeqj.de/sneak/vaultik/issues/268)). Both
+  commands delete without asking under `--json`, since a prompt on stdout
+  would break the JSON document, but the help and the README described
+  only `--force` as skipping it. The `--json` help of both commands and
+  their README entries now say so.
+
+- 2026-10-07: Made a symlink whose target cannot be read stop the backup
+  ([issue #269](https://git.eeqj.de/sneak/vaultik/issues/269)). It was
+  left out of the snapshot with only a debug log line, even without
+  `--skip-errors`. It now aborts the run, or with `--skip-errors` is
+  skipped with the `Failed to access` error line that any other entry
+  the scan cannot read gets.
+
+- 2026-10-07: Stopped a killed rclone upload from leaving a truncated
+  object under its key
+  ([issue #266](https://git.eeqj.de/sneak/vaultik/issues/266)). The
+  rclone backend wrote each object straight to its key, so killing an
+  upload to a local or sftp remote left a truncated object there; the
+  next backup found the key with `Stat`, skipped the upload and recorded
+  a snapshot that could not be restored. On a remote with a server-side
+  move, an object is now written under a temporary name ending in
+  `.partial` and moved into place, and listings skip such names. Remotes
+  without one are still written in place.
+
+- 2026-10-07: Made an interrupted command exit 130 and say so
+  ([issue #267](https://git.eeqj.de/sneak/vaultik/issues/267)). Ctrl-C
+  or SIGTERM during `snapshot create`, `snapshot restore` or `snapshot
+  verify` exited 0 with no error line (`snapshot verify --json` exited
+  1, also without one), so a `--cron` run that never finished looked
+  like a success. A command stopped by either signal now exits 130 and
+  prints `interrupted before the command finished` on stderr, under
+  `--cron` and `--json` too.
+
+- 2026-10-07: Corrected documentation, help text and comments that were
+  false about the code
+  ([issue #233](https://git.eeqj.de/sneak/vaultik/issues/233)). A blob
+  is not streamed to storage. The README, `ARCHITECTURE.md` and
+  `config.example.yml` now say a backup needs free temporary space,
+  because each blob is written whole to a temporary file before it is
+  uploaded (up to about `blob_size_limit`; an rclone destination that
+  cannot stream uploads needs about twice that) and the metadata export
+  writes copies of the local index. Temporary files go to `$TMPDIR`
+  (default `/tmp`); with `TMPDIR` unset, SQLite writes one of those
+  copies to `/var/tmp`. Also corrected: the snapshot ID format, what restore
+  reads and how incomplete snapshots are removed in `docs/DATAMODEL.md`,
+  what `source_path` holds, the `index_path` and config file defaults,
+  what `snapshot remove` cleans up, how the release gets its Go
+  toolchain, and the `script/release` and `script/fmt-check` comments.
+
+- 2026-10-07: Cut the time the `internal/vaultik` and `internal/database`
+  tests take ([issue #235](https://git.eeqj.de/sneak/vaultik/issues/235)).
+  Most of the `internal/vaultik` time went to 24 tests that ran one at a
+  time only because they call `log.Initialize`; they now call it before
+  `t.Parallel()`, as the package's other tests do. `TestLargeDatasets`
+  committed each of its 1,500 inserts on its own and now makes them in
+  one transaction. `TestDedupOnlySnapshotRestores` gives its second
+  backup its own snapshot name instead of sleeping past the one-second
+  timestamp in the snapshot ID.
+
+- 2026-10-07: Made two messages say only what is true
+  ([issue #240](https://git.eeqj.de/sneak/vaultik/issues/240)). A config
+  file that others can read was warned about as containing S3
+  credentials even when it set none, as a `file://` config does. The
+  warning now says the file may contain S3 credentials only when
+  `s3.access_key_id` or `s3.secret_access_key` is set, since either may
+  come from a `${...}` reference rather than the file, and otherwise
+  says the file is readable by others. `snapshot purge` against a
+  destination store it could not list gave an error with
+  `listing remote snapshots:` in it twice; the prefix now appears once.
+
+- 2026-10-07: Made `s3.part_size` set the multipart upload part size
+  ([issue #232](https://git.eeqj.de/sneak/vaultik/issues/232)). It was
+  loaded and defaulted but never passed to the S3 client, whose uploader
+  used a fixed 10MiB part. It now reaches the uploader for `storage_url`
+  and for the `s3.*` fields, and a part size S3 refuses, below 5MiB or
+  above 5GiB, `0` included, fails at config load. A blob too large for
+  S3's limit of 10,000 parts at the configured size is uploaded in larger
+  parts. The docs gave the default as `5MB`, which the config file reads
+  as 5,000,000 bytes, below the minimum; they now say `5MiB`.
+
+- 2026-10-07: Made per-name retention work when the hostname contains `_`
+  ([issue #230](https://git.eeqj.de/sneak/vaultik/issues/230)). A
+  snapshot ID is `hostname_name_timestamp`, and the name was read as
+  everything between the first and the last `_`, so with
+  `hostname: my_host` the name `home` came out as `host_home`.
+  `snapshot purge --keep-latest --snapshot home` then printed "No
+  snapshots to delete", and `snapshot create --prune` purged nothing
+  without a message. The name is now read using the hostname the
+  `snapshots` table stores with each snapshot, cut at its first `.` as it
+  is in the ID.
+
+- 2026-10-07: Made `remote info` stop reporting a snapshot's blobs as
+  orphaned when its manifest cannot be read, and stop printing raw
+  names from under `metadata/`
+  ([issue #228](https://git.eeqj.de/sneak/vaultik/issues/228)). A
+  manifest it failed to read was skipped, so that snapshot's blobs were
+  counted as orphaned and the report advised running `vaultik prune`.
+  The orphan figures are now unknown in that case, with no prune
+  advice, and `--json` gives them as `null` with the unreadable remote
+  keys in `unreadable_manifests`. A name under `metadata/` that is not
+  64 lowercase hex characters is now skipped with a warning instead of
+  being printed, control characters included. A manifest under a
+  skipped name is then not read either, so it also leaves the orphan
+  figures unknown, and `--json` counts such manifests in
+  `skipped_manifest_count`. A directory with no manifest in it, as left
+  by an interrupted backup, leaves the figures known.
+
+- 2026-10-07: Made `config set` keep a string that looks like a number
+  ([issue #229](https://git.eeqj.de/sneak/vaultik/issues/229)). It wrote
+  every value unquoted, and `config.Load` reads the file through untyped
+  YAML, so an access key `00112233` loaded as `38043` and a hostname `007`
+  as `7`. A value for a string setting in `config.Config` is now tagged as
+  a YAML string, which the file quotes wherever YAML would read a number or
+  a boolean; other settings are still written unquoted.
+
+- 2026-10-07: Made a backup notice a file rewritten with its size
+  unchanged and a new mtime in the same second as the one in the index
+  ([issue #226](https://git.eeqj.de/sneak/vaultik/issues/226)). The
+  `files` table held mtime in whole seconds and the scanner compared
+  whole seconds, so every later snapshot kept the old content. A new
+  `mtime_nsec` column holds the nanoseconds within the second that
+  `mtime` holds, and the scanner compares the full mtime. A local index
+  created before the change lacks the column and is rebuilt with
+  `vaultik database delete` and a full backup.
+
+- 2026-10-07: Made taking the process-wide lock atomic
+  ([issue #227](https://git.eeqj.de/sneak/vaultik/issues/227)). The lock
+  read `vaultik.pid`, checked whether that PID was alive and then wrote
+  its own, so two writers started together could both pass the check and
+  both run. It is now an `flock` on `vaultik.pid`, held until the run
+  ends; the kernel drops it when the process exits, so a crash leaves no
+  lock behind. A clean exit now empties the file instead of deleting it,
+  because deleting it would let two later runs each lock a different
+  file.
+
+- 2026-10-06: Made `snapshot remove --json` write only its document to
+  stdout when the destination store cannot be reached
+  ([issue #251](https://git.eeqj.de/sneak/vaultik/issues/251)). Its
+  warning that the snapshot's metadata was left on the destination store
+  went to stdout ahead of the document, breaking `| jq` on a command that
+  exited 0. Under `--json` the warning now reaches stderr only, through
+  the logger. The warning, the README and the command's help said
+  `vaultik prune` would finish the cleanup, but `prune` never removes
+  snapshot metadata; they now say to run `vaultik snapshot remove` for the
+  snapshot again once the destination store is reachable.
+
+- 2026-10-06: Made the backup summary and the `snapshots` row count each
+  file, byte and upload once
+  ([issue #225](https://git.eeqj.de/sneak/vaultik/issues/225)). The
+  scanner added a file's bytes again for each new chunk and counted a
+  file as unchanged for each chunk already stored, so a first backup
+  reported twice its size and "backed up" could go negative. Upload
+  figures came from the progress reporter, which `--cron` turns off, and
+  `blob_count` counted earlier paths' blobs again for each later path.
+  The scanner now counts uploads itself; `blob_size`,
+  `blob_uncompressed_size` and `compression_ratio` describe the blobs
+  the snapshot references, and `docs/DATAMODEL.md` now says
+  `chunk_count` and `blob_count` count what the run added.
+
+- 2026-10-06: Made command output follow the README's stdout and stderr
+  rules ([issue #224](https://git.eeqj.de/sneak/vaultik/issues/224)). The
+  startup banner went to stdout, so a `completion` script or a
+  `config get` value started with it; the banner now goes to stderr. A
+  failing `remote info`, `prune` or `snapshot remove` under `--json`
+  printed nothing on either stream, and now reports its error on stderr.
+  `snapshot verify --quiet` printed its whole report; it now prints
+  none, and a failure still reaches stderr with the same exit status.
+
+- 2026-10-06: Made a backup without `--cron` of a snapshot with two or
+  more `paths` complete instead of panicking with `close of closed
+  channel` ([issue #253](https://git.eeqj.de/sneak/vaultik/issues/253)).
+  `Scan` runs once per path and started and stopped the progress
+  reporter each time, and a second stop panics. The reporter is now
+  started and stopped once per snapshot, around the scans of all its
+  paths.
+
+- 2026-10-06: Made a restore path argument select only that path and
+  what is beneath it
+  ([issue #223](https://git.eeqj.de/sneak/vaultik/issues/223)). The
+  lookup matched with SQL `LIKE`, so `/home/u/doc` also restored
+  `doc2`, `DOC` and `doc.txt.bak`, and a `_` or `%` in the path acted
+  as a wildcard. A backup used the same lookup to load the known files
+  of each configured path, so files of a longer sibling path were
+  counted as deleted. `FileRepository.ListUnderPath`, which replaces
+  `ListByPrefix`, returns the file at the path and every file whose
+  path starts with the path plus `/`, compared case-sensitively.
+
+- 2026-10-06: Made restore return an error instead of panicking on a
+  malformed snapshot database
+  ([issue #231](https://git.eeqj.de/sneak/vaultik/issues/231)). A chunk
+  hash shorter than 16 characters crashed the error message naming it,
+  and `--verify` dereferenced a missing `chunks` row and allocated
+  whatever chunk size the database gave. Those messages now go through
+  `shortHash`, a missing row is an error, and `--verify` rejects a
+  negative size and hashes each chunk as a stream.
+
+- 2026-10-06: Made `s3://bucket/prefix` and `s3://bucket/prefix/` the same
+  destination ([issue #222](https://git.eeqj.de/sneak/vaultik/issues/222)).
+  The S3 client put the prefix directly in front of each key, so a prefix
+  without a trailing slash stored `prefixblobs/...`. A non-empty prefix is
+  now joined to every key with one `/`, giving the README's
+  `<bucket>/<prefix>/blobs/...` layout. The `s3.prefix` config setting goes
+  through the same client and gets the same join.
+
+- 2026-10-06: Made restore apply owners, modes and times in an order
+  that keeps them
+  ([issue #219](https://git.eeqj.de/sneak/vaultik/issues/219)). A
+  directory got its stored mode and mtime before its contents were
+  written, so a read-only directory came back without its files and a
+  non-empty one carried the time of the restore. Directories are now
+  created owner-only and get their stored owner, mode and mtime once the
+  restore loop is done, each before its parent. A file's mode is applied
+  after its chown, which on Linux clears setuid and setgid, and a
+  symlink gets its stored owner (as root) and mtime on the link itself.
+
+- 2026-10-06: Made `go.mod` what `go mod tidy` writes, so the
+  pre-commit hook no longer stops every commit
+  ([issue #246](https://git.eeqj.de/sneak/vaultik/issues/246)). A test
+  in `internal/cli` imports `github.com/spf13/pflag` directly, but
+  `go.mod` still marked it `// indirect`, and `script/precommit` fails
+  whenever the tidy changes `go.mod`. It is now in the direct `require`
+  block.
+
+- 2026-10-06: Made the README's steps for restoring on another machine
+  work ([issue #221](https://git.eeqj.de/sneak/vaultik/issues/221)).
+  `config init` wrote a placeholder recipient that `config.Load`
+  rejects, so every command on the new machine failed before reaching
+  the store. The file now has an empty `age_recipients` list,
+  `config.Load` accepts an empty list, and `snapshot create` refuses to
+  run without a recipient.
+
+- 2026-10-06: Made `snapshot restore --skip-errors` skip the files that
+  need a blob it cannot download
+  ([issue #218](https://git.eeqj.de/sneak/vaultik/issues/218)). A missing
+  or damaged blob ended the restore even with the flag, after restoring
+  whichever files happened to come first. Every file that needs such a
+  blob is now reported as failed, the rest are restored, and the command
+  still exits non-zero. Without the flag the blob error still aborts.
+
+- 2026-10-06: Re-vendored the canonical files from `sneak/prompts` at
+  `dd4027b` ([issue #213](https://git.eeqj.de/sneak/vaultik/issues/213)).
+  Linting and testing are now the `lint` and `test` phases of the
+  `Dockerfile`, and the build stage depends on both. `Dockerfile.lint`,
+  `CHECK_EPOCH` and the tests that checked them are gone; every
+  `docker build` in `script/` passes `--no-cache` instead. golangci-lint
+  is v2.14.0, with its new findings fixed in the code, and the rules in
+  `CLAUDE.md` now live in `AGENTS.md`.
+
+- 2026-10-06: Made the local index actually run in WAL mode with a busy
+  timeout ([issue #217](https://git.eeqj.de/sneak/vaultik/issues/217)).
+  The connection settings were written in a form the SQLite driver
+  ignores, so the index ran without either and `snapshot list` or `info`
+  during a backup could make the backup's next write fail with
+  `database is locked`. They are now `_pragma=` parameters, and the
+  metadata export copies the open index with `VACUUM INTO`, because a
+  copy of the file alone misses rows still in the `-wal` file.
+
 - 2026-10-06: Made a backup record the real uid and gid of files,
   directories and symlinks
   ([issue #216](https://git.eeqj.de/sneak/vaultik/issues/216)). The

cmd/vaultik/dockerversion_test.go

@@ -12,48 +12,44 @@ import (
 // #75). The failure it protects against is silent: the image still
 // builds and runs, but `vaultik version` inside it reports "commit:
 // unknown" or a version of "dev", so an operator cannot tell which
-// source produced a given backup. The build takes the values as build
-// args, which script/docker computes on the host, and otherwise derives
-// them from the .git in its context.
+// source produced a given backup. The build takes the version as a
+// build arg, which script/docker computes on the host, and otherwise
+// derives it from the .git in its context; the commit and its date
+// always come from that .git.
 //
-// These are parses of the committed files, for the same reason the lint
-// guards next door are: shelling out to docker would nest a build
-// inside `make test`. That `vaultik version` in the built image really
-// prints the host's version is verified by hand and recorded on the
-// pull request.
+// These are parses of the committed files, because shelling out to
+// docker would nest a build inside `make test`. That `vaultik version`
+// in the built image really prints the host's version is verified by
+// hand.
 
-// dockerScript is script/docker, relative to the repository root.
-const dockerScript = "script/docker"
+// The files under guard, relative to the repository root.
+const (
+	productDockerfile = "Dockerfile"
+	dockerScript      = "script/docker"
+)
 
-// versionArgs are the ldflag targets the build stamps and, matching
-// them, the build args the host must supply. The names line up so the
-// same list checks both files.
-func versionArgs() []string {
-	return []string{"VERSION", "COMMIT", "COMMIT_DATE"}
-}
-
-// TestProductDockerfileTakesVersionAsBuildArgs fails unless the build
-// declares each version arg, with no default, and stamps it into the
-// binary whenever it is given, ahead of the value derived in the
-// container.
-func TestProductDockerfileTakesVersionAsBuildArgs(t *testing.T) {
+// TestProductDockerfileTakesVersionAsBuildArg fails unless the build
+// declares ARG VERSION, with no default, and stamps it into the binary
+// whenever it is given, ahead of the value derived in the container.
+func TestProductDockerfileTakesVersionAsBuildArg(t *testing.T) {
 	t.Parallel()
 
 	found := instructions(t, productDockerfile)
 
-	for _, arg := range versionArgs() {
-		require.Contains(t, found, "ARG "+arg,
-			"%s must declare `ARG %s`, with no default, so the host can"+
-				" pass it in", productDockerfile, arg)
+	require.Contains(t, found, "ARG VERSION",
+		"%s must declare `ARG VERSION`, with no default, so the host can"+
+			" pass it in", productDockerfile)
 
-		assertLdflagReferences(t, found, arg)
-	}
+	assertLdflagReferences(t, found, "VERSION")
 }
 
 // TestProductDockerfileDerivesVersionFromGit fails unless a build given
 // no VERSION, such as a plain `docker build .` of a clone, takes it from
-// `git describe` of the .git in its context, and fails rather than
-// stamp "dev" when that .git yields no version.
+// `git describe` of the .git in its context, stamps "dev" when the
+// context has no .git, and fails rather than stamp "dev" when that .git
+// yields no version. The commit and its date come from the same .git,
+// and the build fails rather than stamp them "unknown" when it is
+// present.
 func TestProductDockerfileDerivesVersionFromGit(t *testing.T) {
 	t.Parallel()
 
@@ -62,31 +58,31 @@ func TestProductDockerfileDerivesVersionFromGit(t *testing.T) {
 	buildAt := indexContaining(found, "go build")
 	require.GreaterOrEqual(t, buildAt, 0, "%s must build", productDockerfile)
 
-	assert.Contains(t, found[buildAt], "git describe --tags --always",
-		"%s must derive the version from git when no VERSION is given",
-		productDockerfile)
+	assert.Contains(t, found[buildAt], "git describe --tags --always || echo dev",
+		"%s must derive the version from git when no VERSION is given,"+
+			" and stamp dev when the context has no .git", productDockerfile)
 	assert.Contains(t, found[buildAt], "[ -e .git ]",
 		"%s must fail when the context carries .git but yields no version",
 		productDockerfile)
+	assert.Contains(t, found[buildAt], "git rev-parse HEAD",
+		"%s must stamp the commit from git", productDockerfile)
+	assert.Contains(t, found[buildAt], "git show -s --format=%cs HEAD",
+		"%s must stamp the commit date from git", productDockerfile)
+	assert.Contains(t, found[buildAt],
+		`[ "$commit" = unknown ] || [ "$commit_date" = unknown ]`,
+		"%s must fail when the context carries .git but yields no commit"+
+			" or date", productDockerfile)
 }
 
 // TestDockerScriptComputesVersionOnTheHost fails unless script/docker
-// derives each value where .git exists and passes it as a build arg,
-// with VERSION coming from script/version so a Docker build reports the
-// same string a local build of the same tree would.
+// passes the version it derives where .git exists as a build arg.
 func TestDockerScriptComputesVersionOnTheHost(t *testing.T) {
 	t.Parallel()
 
 	script := readRepoFile(t, dockerScript)
 
-	for _, arg := range versionArgs() {
-		assert.Contains(t, script, "--build-arg "+arg+"=",
-			"%s must pass --build-arg %s to the build", dockerScript, arg)
-	}
-
-	assert.Contains(t, script, "/version",
-		"%s must take VERSION from script/version, as the Makefile does",
-		dockerScript)
+	assert.Contains(t, script, "--build-arg VERSION=",
+		"%s must pass --build-arg VERSION to the build", dockerScript)
 }
 
 // assertLdflagReferences fails unless the build instruction uses the
@@ -107,3 +103,47 @@ func assertLdflagReferences(t *testing.T, found []string, arg string) {
 		"the go build in %s must use ${%s:-...}, or the arg is passed and"+
 			" discarded", productDockerfile, arg)
 }
+
+// instructions returns the Dockerfile's instructions, one per element,
+// with comments and blank lines dropped and continuation lines joined,
+// so a multi-line RUN is one string.
+func instructions(t *testing.T, name string) []string {
+	t.Helper()
+
+	var (
+		out         []string
+		continued   string
+		isContinued bool
+	)
+
+	for line := range strings.SplitSeq(readRepoFile(t, name), "\n") {
+		trimmed := strings.TrimSpace(line)
+		if !isContinued && (trimmed == "" || strings.HasPrefix(trimmed, "#")) {
+			continue
+		}
+
+		isContinued = strings.HasSuffix(trimmed, `\`)
+		continued += strings.TrimSuffix(trimmed, `\`)
+
+		if isContinued {
+			continue
+		}
+
+		out = append(out, strings.Join(strings.Fields(continued), " "))
+		continued = ""
+	}
+
+	return out
+}
+
+// indexContaining returns the position of the first instruction
+// containing want; -1 if there is none.
+func indexContaining(found []string, want string) int {
+	for i, instruction := range found {
+		if strings.Contains(instruction, want) {
+			return i
+		}
+	}
+
+	return -1
+}

cmd/vaultik/lintdocker_test.go

@@ -1,368 +0,0 @@
-package main_test
-
-import (
-	"os"
-	"path/filepath"
-	"strings"
-	"testing"
-
-	"github.com/stretchr/testify/assert"
-	"github.com/stretchr/testify/require"
-)
-
-// This file guards the shape of the lint gate. Every property asserted
-// here is one whose loss is SILENT: the build still exits 0, the gate
-// still looks green, and nothing was linted or tested.
-//
-// The gate is a build step. script/lint builds Dockerfile.lint, which
-// runs golangci-lint as a RUN instruction, so a successful build is a
-// clean lint. BuildKit will happily replay that RUN from cache on an
-// unchanged tree in well under a second, which is why the check layers
-// are keyed on a CHECK_EPOCH build arg that the calling script
-// regenerates per invocation, and why an empty value is a hard error
-// rather than a stable cache key.
-//
-// These are parses rather than invocations. Shelling out to docker from
-// the test suite would nest a build inside `make test`, which itself
-// runs inside a build in CI. The one property a parse cannot establish
-// -- that a real finding actually fails the build -- is verified by
-// hand against a deliberately broken tree, recorded on the pull
-// request.
-//
-// One property is deliberately NOT tested here: that no script runs the
-// linter on the host. script/lint is the only lint entry point, and it
-// runs golangci-lint only inside the container; keeping it that way is a
-// review matter, not something a test in this file establishes.
-
-// The files under guard, relative to the repository root.
-const (
-	lintDockerfile    = "Dockerfile.lint"
-	productDockerfile = "Dockerfile"
-	lintScript        = "script/lint"
-	cibuildScript     = "script/cibuild"
-)
-
-// linterBinary is the linter's command name, used to locate the
-// config-verify and lint steps in Dockerfile.lint.
-const linterBinary = "golangci-lint"
-
-// checkEpochARG is the declaration, with no default value. A default
-// would satisfy the non-empty guard with a constant, and a constant is
-// a stable cache key: the checks would be replayed from cache forever
-// after the first build.
-const checkEpochARG = "ARG CHECK_EPOCH"
-
-// checkEpochGuard is what turns a build that omits --build-arg into a
-// loud failure instead of a quiet green. Failed steps are never cached,
-// so it fires on every such invocation rather than once.
-const checkEpochGuard = `RUN [ -n "$CHECK_EPOCH" ] || exit 1`
-
-// freshEpoch is the epoch computation the calling scripts must use, as
-// a bare assignment on its own line. Inline in an argument, a failing
-// `date` would not abort under `set -eu`; CHECK_EPOCH would become the
-// empty string, and the guard above would be the only thing standing
-// between that and a permanently cached green. `$$` is required because
-// `date +%s` is second-granular and busybox silently drops `%N`, so
-// without the pid two concurrent runs in one second can collide.
-const freshEpoch = `epoch="$(date +%s%N)$$"`
-
-// TestLintDockerfilePinsTheLinterByDigest fails if the lint image stops
-// being pinned. An unpinned tag makes the gate's verdict depend on
-// whatever the registry currently serves under that name.
-func TestLintDockerfilePinsTheLinterByDigest(t *testing.T) {
-	t.Parallel()
-
-	from := ""
-
-	for _, instruction := range instructions(t, lintDockerfile) {
-		if strings.HasPrefix(instruction, "FROM ") {
-			from = instruction
-
-			break
-		}
-	}
-
-	require.NotEmpty(t, from, "%s declares no FROM", lintDockerfile)
-	assert.Contains(t, from, "golangci/golangci-lint",
-		"the lint image must be the golangci-lint image")
-	assert.Contains(t, from, "@sha256:",
-		"the lint image must be pinned by digest, not by tag alone")
-}
-
-// TestLintDockerfileCannotBeCachedGreen pins the whole cache-busting
-// mechanism in the file that lints: the declaration with no default,
-// the non-empty guard, and the value expanded into the lint command
-// itself rather than merely declared.
-func TestLintDockerfileCannotBeCachedGreen(t *testing.T) {
-	t.Parallel()
-
-	found := instructions(t, lintDockerfile)
-
-	argAt := indexOf(found, checkEpochARG)
-	require.GreaterOrEqual(t, argAt, 0,
-		"%s must declare `%s` with no default value",
-		lintDockerfile, checkEpochARG)
-
-	assert.GreaterOrEqual(t, indexOf(found, checkEpochGuard), argAt,
-		"%s must guard against an empty CHECK_EPOCH with `%s`",
-		lintDockerfile, checkEpochGuard)
-
-	assertEpochExpandedInto(t, found[argAt:], "golangci-lint run")
-
-	// Dependency layers must stay above the ARG, or every lint run
-	// re-downloads the module cache and the inner loop becomes
-	// unusable.
-	download := indexOf(found, "RUN go mod download")
-	require.GreaterOrEqual(t, download, 0,
-		"%s must download modules in their own layer", lintDockerfile)
-	assert.Less(t, download, argAt,
-		"`%s` must come after `go mod download` so dependency layers"+
-			" still cache", checkEpochARG)
-}
-
-// TestLintDockerfileVerifiesTheLinterConfig guards the validation of
-// .golangci.yml itself. `golangci-lint run` rejects a config it cannot
-// parse but silently IGNORES an unknown top-level key, so renaming
-// `linters:` to `linterz:` discards `default: all` and every threshold
-// and still exits 0 reporting no issues. `config verify` is what turns
-// that into a failure, and it has to run BEFORE the lint, or the lint
-// spends a minute reporting a verdict from a config already known to be
-// wrong.
-func TestLintDockerfileVerifiesTheLinterConfig(t *testing.T) {
-	t.Parallel()
-
-	found := instructions(t, lintDockerfile)
-	verify := linterBinary + " config verify"
-
-	verifyAt := indexContaining(found, verify)
-	require.GreaterOrEqual(t, verifyAt, 0,
-		"%s must run `%s --config .golangci.yml`: without it a typo'd"+
-			" top-level key in .golangci.yml is silently ignored and the"+
-			" gate passes with only the default linter set", lintDockerfile,
-		verify)
-
-	runAt := indexContaining(found, linterBinary+" run")
-	require.GreaterOrEqual(t, runAt, 0, "%s must lint", lintDockerfile)
-	assert.Less(t, verifyAt, runAt,
-		"%s must verify the config before linting with it", lintDockerfile)
-
-	// Keyed on the epoch like every other check layer, so it executes
-	// per invocation rather than being replayed. A cached validation
-	// validates nothing.
-	assertEpochExpandedInto(t, found, verify)
-}
-
-// TestProductDockerfileKeysChecksOnTheEpoch holds the same line for the
-// checks that remain in the product image build, but without the guard:
-// a plain `docker build .` with no build arguments must succeed.
-func TestProductDockerfileKeysChecksOnTheEpoch(t *testing.T) {
-	t.Parallel()
-
-	found := instructions(t, productDockerfile)
-
-	argAt := indexOf(found, checkEpochARG)
-	require.GreaterOrEqual(t, argAt, 0,
-		"%s must declare `%s`", productDockerfile, checkEpochARG)
-
-	assert.Equal(t, -1, indexOf(found, checkEpochGuard),
-		"%s must not refuse an empty CHECK_EPOCH: a plain `docker build .`"+
-			" must succeed", productDockerfile)
-
-	assertEpochExpandedInto(t, found[argAt:], "make fmt-check")
-	assertEpochExpandedInto(t, found[argAt:], "make test")
-}
-
-// TestProductDockerfileDoesNotLint records the split deliberately: the
-// linter lives in Dockerfile.lint and nowhere else, so there is exactly
-// one digest pinning it. A lint stage reintroduced here would either be
-// docker-in-docker (`make lint` is now `docker build`) or a second,
-// independently bumpable pin.
-func TestProductDockerfileDoesNotLint(t *testing.T) {
-	t.Parallel()
-
-	contents := readRepoFile(t, productDockerfile)
-
-	for _, forbidden := range []string{"golangci", "make lint"} {
-		assert.NotContains(t, instructionText(contents), forbidden,
-			"%s must not lint: the linter is pinned once, in %s",
-			productDockerfile, lintDockerfile)
-	}
-}
-
-// TestLintScriptBuildsTheLintDockerfileWithAFreshEpoch is the other
-// half of the mechanism. The Dockerfile's guard only rejects an EMPTY
-// epoch; a constant non-empty one would satisfy it and still be served
-// from cache forever.
-func TestLintScriptBuildsTheLintDockerfileWithAFreshEpoch(t *testing.T) {
-	t.Parallel()
-
-	script := readRepoFile(t, lintScript)
-
-	assertBareEpochAssignment(t, script, lintScript)
-	assert.Contains(t, script, `--build-arg CHECK_EPOCH="$epoch"`,
-		"%s must pass the fresh epoch to the build", lintScript)
-	assert.Contains(t, script, lintDockerfile,
-		"%s must build %s", lintScript, lintDockerfile)
-}
-
-// TestCibuildBuildsBothDockerfilesWithFreshEpochs guards the CI gate:
-// dropping either build silently removes a whole class of check from
-// CI while leaving it green.
-func TestCibuildBuildsBothDockerfilesWithFreshEpochs(t *testing.T) {
-	t.Parallel()
-
-	script := readRepoFile(t, cibuildScript)
-
-	assertBareEpochAssignment(t, script, cibuildScript)
-	assert.Equal(t, 2, strings.Count(script, freshEpoch),
-		"%s must compute a fresh epoch for each of its two builds",
-		cibuildScript)
-	assert.Equal(t, 2,
-		strings.Count(script, `--build-arg CHECK_EPOCH="$epoch"`),
-		"%s must pass a fresh epoch to both builds", cibuildScript)
-	assert.Contains(t, script, "-f Dockerfile.lint",
-		"%s must build %s", cibuildScript, lintDockerfile)
-}
-
-// assertEpochExpandedInto fails unless some instruction runs the named
-// command with the epoch expanded into it. Expansion, not mere
-// declaration: an ARG that no instruction references is not guaranteed
-// to key the layer, and the expansion also puts the value in the build
-// log where a reader can see the layer was keyed fresh.
-func assertEpochExpandedInto(t *testing.T, found []string, command string) {
-	t.Helper()
-
-	for _, instruction := range found {
-		if !strings.HasPrefix(instruction, "RUN ") {
-			continue
-		}
-
-		if strings.Contains(instruction, command) &&
-			strings.Contains(instruction, "${CHECK_EPOCH}") {
-			return
-		}
-	}
-
-	assert.Fail(t, "no epoch-keyed layer runs the command",
-		"`%s` must run in a layer that expands ${CHECK_EPOCH}, or it"+
-			" will be replayed from cache without executing", command)
-}
-
-// assertBareEpochAssignment fails unless the script computes the epoch
-// as a bare assignment on its own line.
-func assertBareEpochAssignment(t *testing.T, script, name string) {
-	t.Helper()
-
-	for line := range strings.SplitSeq(script, "\n") {
-		if strings.TrimSpace(line) == freshEpoch {
-			return
-		}
-	}
-
-	assert.Fail(t, "no bare epoch assignment",
-		"%s must compute `%s` as a bare assignment on its own line, so"+
-			" `set -e` catches a failing date instead of quietly"+
-			" building with an empty epoch", name, freshEpoch)
-}
-
-// instructions returns the Dockerfile's instructions, one per element,
-// with comments and blank lines dropped and continuation lines joined,
-// so a multi-line RUN is one string.
-func instructions(t *testing.T, name string) []string {
-	t.Helper()
-
-	return strings.Split(instructionText(readRepoFile(t, name)), "\n")
-}
-
-// instructionText is instructions' parse, before splitting: it is also
-// what a "must not contain" assertion should look at, so that a word
-// appearing only in a comment is not mistaken for behaviour.
-func instructionText(contents string) string {
-	var (
-		out         []string
-		continued   string
-		isContinued bool
-	)
-
-	for line := range strings.SplitSeq(contents, "\n") {
-		trimmed := strings.TrimSpace(line)
-		if !isContinued && (trimmed == "" || strings.HasPrefix(trimmed, "#")) {
-			continue
-		}
-
-		isContinued = strings.HasSuffix(trimmed, `\`)
-		continued += strings.TrimSuffix(trimmed, `\`)
-
-		if isContinued {
-			continue
-		}
-
-		out = append(out, strings.Join(strings.Fields(continued), " "))
-		continued = ""
-	}
-
-	return strings.Join(out, "\n")
-}
-
-// indexOf returns the position of the first instruction equal to, or
-// beginning with, want; -1 if there is none. An `ARG NAME=default`
-// counts as beginning with `ARG NAME`, so a declared arg is found
-// whether or not it carries a default.
-func indexOf(found []string, want string) int {
-	for i, instruction := range found {
-		if instruction == want ||
-			strings.HasPrefix(instruction, want+" ") ||
-			strings.HasPrefix(instruction, want+"=") {
-			return i
-		}
-	}
-
-	return -1
-}
-
-// indexContaining returns the position of the first instruction
-// containing want; -1 if there is none.
-func indexContaining(found []string, want string) int {
-	for i, instruction := range found {
-		if strings.Contains(instruction, want) {
-			return i
-		}
-	}
-
-	return -1
-}
-
-// readRepoFile reads a file by its path relative to the repository
-// root.
-func readRepoFile(t *testing.T, name string) string {
-	t.Helper()
-
-	//nolint:gosec // G304: the path is a constant relative to this repo
-	contents, err := os.ReadFile(filepath.Join(repoRoot(t), name))
-	require.NoError(t, err)
-
-	return string(contents)
-}
-
-// repoRoot returns the repository root. The test binary runs with its
-// package directory as the working directory, so the root is found by
-// walking up until the module file appears.
-func repoRoot(t *testing.T) string {
-	t.Helper()
-
-	dir, err := os.Getwd()
-	require.NoError(t, err)
-
-	for {
-		_, err = os.Stat(filepath.Join(dir, "go.mod"))
-		if err == nil {
-			return dir
-		}
-
-		parent := filepath.Dir(dir)
-		require.NotEqual(t, dir, parent,
-			"walked to the filesystem root without finding a go.mod")
-
-		dir = parent
-	}
-}

cmd/vaultik/makefile_test.go

@@ -1,6 +1,8 @@
 package main_test
 
 import (
+	"os"
+	"path/filepath"
 	"regexp"
 	"slices"
 	"strings"
@@ -84,14 +86,48 @@ func TestBuildTargetBuildsTheBinary(t *testing.T) {
 		"`make build` must depend on the rule that builds the binary")
 }
 
-// readMakefile returns the contents of the repository's Makefile. The
-// root is located by the shared walk in lintdocker_test.go.
+// readMakefile returns the contents of the repository's Makefile.
 func readMakefile(t *testing.T) string {
 	t.Helper()
 
 	return readRepoFile(t, "Makefile")
 }
 
+// readRepoFile reads a file by its path relative to the repository
+// root.
+func readRepoFile(t *testing.T, name string) string {
+	t.Helper()
+
+	//nolint:gosec // G304: the path is a constant relative to this repo
+	contents, err := os.ReadFile(filepath.Join(repoRoot(t), name))
+	require.NoError(t, err)
+
+	return string(contents)
+}
+
+// repoRoot returns the repository root. The test binary runs with its
+// package directory as the working directory, so the root is found by
+// walking up until the module file appears.
+func repoRoot(t *testing.T) string {
+	t.Helper()
+
+	dir, err := os.Getwd()
+	require.NoError(t, err)
+
+	for {
+		_, err = os.Stat(filepath.Join(dir, "go.mod"))
+		if err == nil {
+			return dir
+		}
+
+		parent := filepath.Dir(dir)
+		require.NotEqual(t, dir, parent,
+			"walked to the filesystem root without finding a go.mod")
+
+		dir = parent
+	}
+}
+
 // phonyTargets returns every name declared phony, across all .PHONY
 // lines.
 func phonyTargets(makefile string) []string {

config.example.yml

@@ -3,7 +3,8 @@
 # Copy this file and uncomment/modify the values you need
 
 # Age recipient public keys for encryption
-# This is REQUIRED - backups are encrypted to these public keys
+# Backups are encrypted to these public keys. snapshot create needs at least
+# one; listing, verifying and restoring do not
 # Generate with: age-keygen | grep "public key"
 age_recipients:
   - age1cj2k2addawy294f6k2gr2mf9gps9r3syplryxca3nvxj3daqm96qfp84tz
@@ -286,15 +287,18 @@ storage_url: "rclone://myremote/path/to/backups"
 #  #use_ssl: true
 #
 #  # Part size for multipart uploads
-#  # Minimum 5MB, affects memory usage during upload
-#  # Supports: 5MB, 10M, 100MiB, etc.
-#  # Default: 5MB
-#  #part_size: 5MB
+#  # Minimum 5MiB, maximum 5GiB; affects memory usage during upload
+#  # A blob too large for 10,000 parts of this size gets larger parts
+#  # Supports: 10MB, 16MiB, 100MiB, etc. (5MB is below the minimum)
+#  # Default: 5MiB
+#  #part_size: 5MiB
 
 # Path to local SQLite index database
 # This database tracks file state for incremental backups
-# Default: /var/lib/vaultik/index.sqlite
-#index_path: /var/lib/vaultik/index.sqlite
+# Default: the platform data directory, e.g.
+#   macOS: ~/Library/Application Support/vaultik/index.sqlite
+#   Linux: ~/.local/share/vaultik/index.sqlite
+#index_path: /path/to/index.sqlite
 
 # Average chunk size for content-defined chunking
 # Smaller chunks = better deduplication but more metadata
@@ -309,6 +313,12 @@ storage_url: "rclone://myremote/path/to/backups"
 # Chunking uses no secret (the FastCDC parameters are fixed and public). At a
 # large limit a blob holds hundreds of chunks, so individual chunk lengths are
 # not visible in its size; lowering the limit toward chunk_size exposes them.
+# A backup needs free temporary space, because each blob is written whole to
+# a temporary file before it is uploaded (up to about blob_size_limit; an
+# rclone destination that cannot stream uploads needs about twice that) and
+# the metadata export writes copies of the local index. Temporary files go to
+# $TMPDIR (default /tmp); with TMPDIR unset, SQLite writes one of those copies
+# to /var/tmp.
 # Supports: 1GB, 10G, 500MB, 1GiB, etc.
 # Default: 10GB
 #blob_size_limit: 10GB

docs/DATAMODEL.md

@@ -36,7 +36,8 @@ Stores metadata about files in the filesystem being backed up.
 **Columns:**
 - `id` (TEXT PRIMARY KEY) - UUID for the file record
 - `path` (TEXT NOT NULL UNIQUE) - Absolute file path
-- `mtime` (INTEGER NOT NULL) - Modification time as Unix timestamp
+- `mtime` (INTEGER NOT NULL) - Modification time, whole seconds since the Unix epoch
+- `mtime_nsec` (INTEGER NOT NULL) - Nanoseconds within that second, 0 to 999999999
 - `size` (INTEGER NOT NULL) - File size in bytes
 - `mode` (INTEGER NOT NULL) - Unix file permissions and type
 - `uid` (INTEGER NOT NULL) - User ID of file owner
@@ -110,17 +111,17 @@ Maps chunks to the blobs that contain them.
 Tracks backup snapshots.
 
 **Columns:**
-- `id` (TEXT PRIMARY KEY) - Snapshot ID (format: hostname-YYYYMMDD-HHMMSSZ)
+- `id` (TEXT PRIMARY KEY) - Snapshot ID (format: `hostname_name_timestamp`, e.g. `server1_home_2025-06-01T12:00:00Z`: the hostname up to its first `.`, the snapshot name, and an RFC 3339 UTC timestamp)
 - `hostname` (TEXT) - Hostname where backup was created
 - `vaultik_version` (TEXT) - Version of Vaultik used
 - `vaultik_git_revision` (TEXT) - Git revision of Vaultik used
 - `started_at` (INTEGER) - Start timestamp
 - `completed_at` (INTEGER) - Completion timestamp (NULL if in progress)
 - `file_count` (INTEGER) - Number of files in snapshot
-- `chunk_count` (INTEGER) - Number of unique chunks
-- `blob_count` (INTEGER) - Number of blobs referenced
+- `chunk_count` (INTEGER) - Number of chunks this snapshot stored that were not stored before
+- `blob_count` (INTEGER) - Number of blobs this snapshot created
 - `total_size` (INTEGER) - Total size of all files
-- `blob_size` (INTEGER) - Total size of all blobs (compressed)
+- `blob_size` (INTEGER) - Total compressed size of all referenced blobs
 - `blob_uncompressed_size` (INTEGER) - Total uncompressed size of all referenced blobs
 - `compression_ratio` (REAL) - Compression ratio achieved
 - `compression_level` (INTEGER) - Compression level used for this snapshot
@@ -217,8 +218,8 @@ The `{remote-key}` directory name is a one-way hash of the human snapshot ID, so
 ### 4. Restore Process
 
 The restore process doesn't use the local database. Instead:
-1. Downloads snapshot metadata from S3
-2. Downloads required blobs based on manifest
+1. Downloads and decrypts the snapshot's metadata database (`db.zst.age`) from S3
+2. Downloads the blobs holding the chunks of the files being restored, found through that database's `blob_chunks` table; the manifest is not read
 3. Reconstructs files from decrypted and decompressed chunks
 
 ### 5. Pruning
@@ -231,9 +232,8 @@ The restore process doesn't use the local database. Instead:
 
 Before each backup:
 1. Query incomplete snapshots (where `completed_at IS NULL`)
-2. Check if metadata exists in S3
-3. If no metadata, delete snapshot and all associations
-4. Clean up orphaned files, chunks, and blobs
+2. Delete each one and all its associations, without checking S3 for its metadata
+3. Clean up orphaned files, chunks, and blobs
 
 ## Repository Pattern
 
@@ -280,7 +280,7 @@ This ensures consistency, especially important for operations like:
 
 3. **Batch Operations**: Where possible, operations are batched within transactions
 
-4. **Write-Ahead Logging**: SQLite WAL mode is enabled for better concurrency
+4. **Write-Ahead Logging**: The local index runs in SQLite WAL mode with a 10-second busy timeout, so a read-only command such as `snapshot list` can read it while a backup writes to it. Committed rows can sit in the `-wal` file beside the index until a checkpoint, so the metadata export copies the index through SQLite (`VACUUM INTO`), not as a file
 
 ## Data Integrity
 

docs/REPOSTRUCTURE.md

@@ -4,7 +4,7 @@ This document describes the structure and organization of data stored in the S3
 
 ## Overview
 
-Vaultik stores all backup data in an S3-compatible object store. The repository consists of two main components:
+Vaultik stores all backup data in an S3-compatible object store. The repository consists of two main components, plus a marker file:
 1. **Blobs** - The actual backup data (content-addressed, encrypted)
 2. **Metadata** - Snapshot information and manifests (partially encrypted)
 
@@ -12,6 +12,7 @@ Vaultik stores all backup data in an S3-compatible object store. The repository
 
 ```
 <bucket>/<prefix>/
+├── vaultik-destination.txt
 ├── blobs/
 │   └── <hash[0:2]>/
 │       └── <hash[2:4]>/
@@ -24,6 +25,10 @@ Vaultik stores all backup data in an S3-compatible object store. The repository
 
 The metadata subdirectory is named with the **remote key**, a one-way hash of the snapshot ID, not with the human-readable snapshot ID itself. See [Remote Key Derivation](#remote-key-derivation).
 
+## Marker File (`vaultik-destination.txt`)
+
+Every backup writes this file at the root before it uploads anything. It holds one fixed line of plain text and names no host, path or time. While the local index holds snapshots, a destination without it is treated as not present: `snapshot create` refuses to write to it, and `prune`, `snapshot purge`, `snapshot remove` and `snapshot list` behave as for a destination that cannot be listed. An unplugged volume leaves an empty directory at its mount point, and without the marker that directory would read as a destination whose snapshots are all gone. `remote nuke` deletes the marker last.
+
 ## Blobs Directory (`blobs/`)
 
 ### Structure

go.mod

@@ -20,9 +20,11 @@ require (
 	github.com/rclone/rclone v1.72.1
 	github.com/spf13/afero v1.15.0
 	github.com/spf13/cobra v1.10.1
+	github.com/spf13/pflag v1.0.10
 	github.com/stretchr/testify v1.11.1
 	go.uber.org/fx v1.24.0
 	golang.org/x/sync v0.18.0
+	golang.org/x/sys v0.38.0
 	golang.org/x/term v0.37.0
 	gopkg.in/yaml.v3 v3.0.1
 	modernc.org/sqlite v1.38.0
@@ -225,7 +227,6 @@ require (
 	github.com/smarty/assertions v1.16.0 // indirect
 	github.com/sony/gobreaker v1.0.0 // indirect
 	github.com/spacemonkeygo/monkit/v3 v3.0.25-0.20251022131615-eb24eb109368 // indirect
-	github.com/spf13/pflag v1.0.10 // indirect
 	github.com/t3rm1n4l/go-mega v0.0.0-20251031123324-a804aaa87491 // indirect
 	github.com/tidwall/gjson v1.18.0 // indirect
 	github.com/tidwall/match v1.1.1 // indirect
@@ -263,7 +264,6 @@ require (
 	golang.org/x/exp v0.0.0-20251023183803-a4bb9ffd2546 // indirect
 	golang.org/x/net v0.47.0 // indirect
 	golang.org/x/oauth2 v0.33.0 // indirect
-	golang.org/x/sys v0.38.0 // indirect
 	golang.org/x/text v0.31.0 // indirect
 	golang.org/x/time v0.14.0 // indirect
 	golang.org/x/tools v0.38.0 // indirect

internal/blob/packer.go

@@ -245,6 +245,17 @@ func (p *Packer) Flush(ctx context.Context) error {
 	return nil
 }
 
+// DiscardCurrentBlob closes and removes the temp file of the blob being
+// packed, if any, and drops that blob. A caller that stops before Flush
+// must call it, or the temp file is left behind. Thread-safe.
+func (p *Packer) DiscardCurrentBlob() {
+	p.mu.Lock()
+	defer p.mu.Unlock()
+
+	p.cleanupTempFile()
+	p.currentBlob = nil
+}
+
 // FinalizeBlob finalizes the current blob being assembled.
 // This compresses the accumulated chunks, encrypts the result, and computes
 // the content-addressed hash. The finalized blob is either passed to the

internal/cli/app.go

@@ -200,12 +200,16 @@ func RunApp(ctx context.Context, app *fx.App) error {
 }
 
 // errReported marks a failure the operation has already shown the user
-// (and deliberately withheld under --json). Entry turns it into a
-// non-zero exit status without printing anything further, so the error
-// line is not doubled. It flows up from RunOperation through cobra to
-// Entry.
+// (or, under `snapshot verify --json`, put in its document). Entry
+// turns it into a non-zero exit status without printing anything
+// further, so the error line is not doubled. It flows up from
+// RunOperation through cobra to Entry.
 var errReported = errors.New("operation failed")
 
+// errInterrupted marks an operation that SIGINT or SIGTERM stopped
+// before it finished. Entry shows it and returns exitCodeInterrupted.
+var errInterrupted = errors.New("interrupted before the command finished")
+
 // RunOperation runs op against the Vaultik instance inside the fx app
 // and turns a failure into a returned error rather than an os.Exit from
 // within the goroutine. An os.Exit there skipped main's deferred
@@ -220,17 +224,21 @@ var errReported = errors.New("operation failed")
 // interrupt OnStop cancels op and waits for the goroutine to return, so
 // op's cleanup (removing decrypted scratch files) runs before the
 // process exits; the wait is bounded by shutdownTimeout. report is
-// called with a non-canceled failure so the caller can log it (and
-// suppress it under --json) before it becomes errReported. A context
-// cancellation is the interrupt path, not a failure: it is neither
-// reported nor counted as one.
+// called with a failure so the caller can show it to the user before
+// it becomes errReported.
+//
+// The run counts as interrupted unless op returned, without an
+// interrupt having cancelled it, before RunWithApp returned. An
+// interrupted op is not reported, whatever it returned; RunOperation
+// returns errInterrupted instead.
 func RunOperation(
 	ctx context.Context, opts AppOptions,
 	op func(v *vaultik.Vaultik) error, report func(err error),
 ) error {
 	var (
-		mu     sync.Mutex
-		failed bool
+		mu       sync.Mutex
+		finished bool // op returned before any interrupt cancelled it
+		failed   bool // op finished with an error
 	)
 
 	opts.Invokes = append(opts.Invokes,
@@ -241,11 +249,21 @@ func RunOperation(
 				OnStart: func(_ context.Context) error {
 					stop = v.StartOperation(func() {
 						err := op(v)
-						if err != nil && !errors.Is(err, context.Canceled) {
-							report(err)
+
+						// Only stop, called from OnStop below, cancels the
+						// Vaultik context, so a live context means no
+						// interrupt cancelled op. Check the context, not
+						// err: an interrupted op need not return
+						// context.Canceled (`snapshot verify --json`
+						// returns a verification failure).
+						if v.Context().Err() == nil {
+							if err != nil {
+								report(err)
+							}
 
 							mu.Lock()
-							failed = true
+							finished = true
+							failed = err != nil
 							mu.Unlock()
 						}
 
@@ -278,28 +296,34 @@ func RunOperation(
 		return err
 	}
 
-	// The goroutine sets failed before triggering the shutdown that lets
-	// RunWithApp return, so the write is in place by the time we read it.
+	// RunWithApp returns only after the app was asked to stop, either by
+	// an interrupt or by the goroutine's Shutdown call. When op finished
+	// without being cancelled, the goroutine set finished before that
+	// call. So if finished is unset here, an interrupt stopped the app,
+	// and op either returned after it was cancelled or is still running
+	// because the shutdown timed out.
 	mu.Lock()
 	defer mu.Unlock()
 
-	if failed {
+	switch {
+	case !finished:
+		return errInterrupted
+	case failed:
 		return errReported
+	default:
+		return nil
 	}
-
-	return nil
 }
 
 // runVaultikApp runs the standard single-operation command lifecycle
 // shared by the snapshot list/purge/remove and remote nuke subcommands:
 // resolve the config, then run op against the Vaultik instance through
-// RunOperation, reporting a failure prefixed with failMsg (suppressed
-// while suppressErrors is true, e.g. under --json). mode says whether the
-// command takes the PID lock. jsonOutput marks a command whose stdout is a
-// JSON document: it quiets the UI but, unlike Quiet, leaves the stderr log
-// level alone.
+// RunOperation, reporting a failure prefixed with failMsg on stderr. mode
+// says whether the command takes the PID lock. jsonOutput marks a command
+// whose stdout is a JSON document: it quiets the UI but, unlike Quiet,
+// leaves the stderr log level alone.
 func runVaultikApp(
-	cmd *cobra.Command, mode lockMode, jsonOutput, suppressErrors bool,
+	cmd *cobra.Command, mode lockMode, jsonOutput bool,
 	failMsg string, op func(v *vaultik.Vaultik) error,
 ) error {
 	configPath, err := ResolveConfigPath()
@@ -319,10 +343,6 @@ func runVaultikApp(
 		},
 		Mode: mode,
 	}, op, func(err error) {
-		if suppressErrors {
-			return
-		}
-
 		log.Error(failMsg, "error", err)
 		ReportErrorf("%s: %v", failMsg, err)
 	})

internal/cli/config.go

@@ -7,11 +7,14 @@ import (
 	"os"
 	"os/exec"
 	"path/filepath"
+	"reflect"
 	"strconv"
 	"strings"
+	"unicode/utf8"
 
 	"github.com/spf13/cobra"
 	"gopkg.in/yaml.v3"
+	"sneak.berlin/go/vaultik/internal/config"
 	"sneak.berlin/go/vaultik/internal/ui"
 )
 
@@ -31,6 +34,9 @@ const configDirMode = 0o755
 // yaml.Marshal's 4-space default.
 const configYAMLIndent = 2
 
+// yamlStringTag is YAML's tag for a string scalar.
+const yamlStringTag = "!!str"
+
 var (
 	errConfigExists     = errors.New("config file already exists")
 	errEmptyConfig      = errors.New("empty config file")
@@ -45,16 +51,19 @@ const defaultConfigTemplate = `# vaultik configuration
 
 # ─── REQUIRED ────────────────────────────────────────────────────────────────
 
-# Age recipient public keys for encryption.
+# Age recipient public keys for encryption. snapshot create needs at least
+# one; listing, verifying and restoring do not, so a machine that only
+# restores can leave this empty.
 # Backups are encrypted to ALL listed recipients; any one of the corresponding
 # private keys can decrypt. Adding a recipient later does not re-encrypt data
 # already stored: deduplicated chunks and existing blobs stay encrypted to the
 # earlier recipients, so a newly added key cannot restore them on its own (see
-# docs/REPOSTRUCTURE.md, Accepted Risks). Generate a keypair with:
+# docs/REPOSTRUCTURE.md, Accepted Risks). Generate a keypair and add its
+# public key with:
 #   age-keygen -o vaultik_backup_private_key.txt
 #   grep 'public key' vaultik_backup_private_key.txt
-age_recipients:
-  - age1REPLACE_WITH_YOUR_PUBLIC_KEY
+#   vaultik config set age_recipients.0 age1...
+age_recipients: []
 
 # Named snapshots. Each snapshot backs up one or more paths and can have its
 # own exclude patterns in addition to the global excludes below.
@@ -196,7 +205,7 @@ storage_url: ""
 #   access_key_id: YOUR_ACCESS_KEY
 #   secret_access_key: YOUR_SECRET_KEY
 #   # region: us-east-1        # Default: us-east-1
-#   # part_size: 5MB           # Multipart upload part size. Default: 5MB
+#   # part_size: 5MiB          # Upload part size, 5MiB to 5GiB. Default: 5MiB
 #   # For the s3:// form, disable TLS with ?ssl=false in the URL, not use_ssl.
 
 # ─── OPTIONAL ────────────────────────────────────────────────────────────────
@@ -580,9 +589,58 @@ func yamlPathSet(root *yaml.Node, keys []string, value string) error {
 		}
 	}
 
+	// config.Load reads the file through untyped YAML, which turns an
+	// unquoted 00112233 into the number 38043 and 1e5 into 100000. Tagging
+	// a string setting as a string makes the encoder quote such a value.
+	// Other settings stay unquoted, so compression_level 9 is a number.
+	// The encoder refuses to write a value that is not valid UTF-8 as a
+	// string. Left untagged, such a value is written as base64 !!binary and
+	// loads back unchanged.
+	if configKeyIsString(keys) && utf8.ValidString(value) {
+		node.Tag = yamlStringTag
+	}
+
 	return nil
 }
 
+// configKeyIsString reports whether the dotted key names a string in
+// config.Config, following the fields' yaml tags, as s3.access_key_id and
+// snapshots.home.exclude.0 do.
+func configKeyIsString(keys []string) bool {
+	typ := reflect.TypeFor[config.Config]()
+
+	for _, key := range keys {
+		switch {
+		case typ.Kind() == reflect.Map || typ.Kind() == reflect.Slice:
+			// The key is a snapshot name or a list index.
+			typ = typ.Elem()
+		case typ.Kind() == reflect.Struct:
+			field, ok := yamlField(typ, key)
+			if !ok {
+				return false
+			}
+
+			typ = field.Type
+		default:
+			return false
+		}
+	}
+
+	return typ.Kind() == reflect.String
+}
+
+// yamlField returns the field of struct type typ whose yaml tag names key.
+func yamlField(typ reflect.Type, key string) (reflect.StructField, bool) {
+	for field := range typ.Fields() {
+		name, _, _ := strings.Cut(field.Tag.Get("yaml"), ",")
+		if name == key {
+			return field, true
+		}
+	}
+
+	return reflect.StructField{}, false
+}
+
 // yamlSetInMapping resolves (creating if needed) the value node for key
 // within a mapping node, setting it to value when it is the final path
 // element, and returns the node to descend into.

internal/cli/config_test.go

@@ -4,6 +4,7 @@ import (
 	"bytes"
 	"os"
 	"path/filepath"
+	"strconv"
 	"strings"
 	"testing"
 
@@ -24,8 +25,10 @@ func TestDefaultConfigTemplateParses(t *testing.T) {
 		t.Fatalf("default config template is not valid YAML: %v", err)
 	}
 
-	if len(cfg.AgeRecipients) != 1 {
-		t.Errorf("expected 1 placeholder age recipient, got %d", len(cfg.AgeRecipients))
+	// A placeholder recipient would fail config.Load, so the template
+	// leaves the list empty.
+	if len(cfg.AgeRecipients) != 0 {
+		t.Errorf("expected no age recipients, got %d", len(cfg.AgeRecipients))
 	}
 
 	home, ok := cfg.Snapshots["home"]
@@ -55,6 +58,147 @@ func TestDefaultConfigTemplateParses(t *testing.T) {
 	}
 }
 
+// TestConfigSetRecipientOnFreshConfig follows the README quickstart: on the
+// file `config init` writes, `config set age_recipients.0` and
+// `config set storage_url` give a config that loads with that recipient.
+func TestConfigSetRecipientOnFreshConfig(t *testing.T) {
+	t.Parallel()
+
+	const recipient = "age1278m9q7dp3chsh2dcy82qk27v047zywyvtxwnj4cvt0z65jw6a7q5dqhfj"
+
+	path := filepath.Join(t.TempDir(), "config.yml")
+
+	err := os.WriteFile(path, []byte(defaultConfigTemplate), configFileMode)
+	if err != nil {
+		t.Fatalf("write config: %v", err)
+	}
+
+	out := ui.NewWithColor(&bytes.Buffer{}, false)
+
+	err = writeConfigSet(out, path, "age_recipients.0", recipient)
+	if err != nil {
+		t.Fatalf("config set age_recipients.0: %v", err)
+	}
+
+	err = writeConfigSet(out, path, "storage_url", "file:///mnt/backups")
+	if err != nil {
+		t.Fatalf("config set storage_url: %v", err)
+	}
+
+	cfg, err := config.Load(path)
+	if err != nil {
+		t.Fatalf("config.Load: %v", err)
+	}
+
+	if len(cfg.AgeRecipients) != 1 || cfg.AgeRecipients[0] != recipient {
+		t.Errorf("age_recipients = %v, want [%s]", cfg.AgeRecipients, recipient)
+	}
+}
+
+// TestConfigSetStringLooksLikeNumber sets string settings to values that
+// YAML reads as numbers or booleans when they are unquoted, and checks that
+// config.Load returns each one unchanged.
+func TestConfigSetStringLooksLikeNumber(t *testing.T) {
+	t.Parallel()
+
+	tests := []struct {
+		key   string
+		value string
+		field func(cfg *config.Config) string
+	}{
+		{"s3.access_key_id", "00112233",
+			func(cfg *config.Config) string { return cfg.S3.AccessKeyID }},
+		{"s3.secret_access_key", "12345678901234567890123456789012",
+			func(cfg *config.Config) string { return cfg.S3.SecretAccessKey }},
+		{"hostname", "007",
+			func(cfg *config.Config) string { return cfg.Hostname }},
+		{"s3.prefix", "1e5",
+			func(cfg *config.Config) string { return cfg.S3.Prefix }},
+		{"s3.bucket", "true",
+			func(cfg *config.Config) string { return cfg.S3.Bucket }},
+		{"s3.region", "FALSE",
+			func(cfg *config.Config) string { return cfg.S3.Region }},
+		{"snapshots.home.exclude.0", "1.10",
+			func(cfg *config.Config) string { return cfg.Snapshots["home"].Exclude[0] }},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.key+"="+tt.value, func(t *testing.T) {
+			t.Parallel()
+
+			cfg := loadAfterConfigSet(t, tt.key, tt.value)
+
+			got := tt.field(cfg)
+			if got != tt.value {
+				t.Errorf("%s = %q after config set %q", tt.key, got, tt.value)
+			}
+		})
+	}
+}
+
+// TestConfigSetNonUTF8Path checks that config set still accepts a value that
+// is not valid UTF-8, such as a path with a Latin-1 file name, and that
+// config.Load returns it unchanged.
+func TestConfigSetNonUTF8Path(t *testing.T) {
+	t.Parallel()
+
+	const dir = "/srv/caf\xe9"
+
+	cfg := loadAfterConfigSet(t, "snapshots.home.paths.0", dir)
+
+	got := cfg.Snapshots["home"].Paths[0]
+	if got != dir {
+		t.Errorf("snapshots.home.paths.0 = %q, want %q", got, dir)
+	}
+}
+
+// TestConfigSetNumberStaysNumber checks that a number set for an integer
+// setting is still read as a number, not as a quoted string.
+func TestConfigSetNumberStaysNumber(t *testing.T) {
+	t.Parallel()
+
+	const level = 9
+
+	cfg := loadAfterConfigSet(t, "compression_level", strconv.Itoa(level))
+
+	if cfg.CompressionLevel != level {
+		t.Errorf("compression_level = %d, want %d", cfg.CompressionLevel, level)
+	}
+}
+
+// loadAfterConfigSet writes the file `config init` writes, sets storage_url
+// to a local directory so that the file passes validation, applies
+// `config set key value` and returns what config.Load reads back.
+func loadAfterConfigSet(t *testing.T, key, value string) *config.Config {
+	t.Helper()
+
+	path := filepath.Join(t.TempDir(), "config.yml")
+
+	err := os.WriteFile(path, []byte(defaultConfigTemplate), configFileMode)
+	if err != nil {
+		t.Fatalf("write config: %v", err)
+	}
+
+	out := ui.NewWithColor(&bytes.Buffer{}, false)
+
+	err = writeConfigSet(out, path, "storage_url", "file:///mnt/backups")
+	if err != nil {
+		t.Fatalf("config set storage_url: %v", err)
+	}
+
+	err = writeConfigSet(out, path, key, value)
+	if err != nil {
+		t.Fatalf("config set %s: %v", key, err)
+	}
+
+	cfg, err := config.Load(path)
+	if err != nil {
+		t.Fatalf("config.Load: %v", err)
+	}
+
+	return cfg
+}
+
 const testYAML = `# top comment
 compression_level: 3
 age_recipients:

internal/cli/entry.go

@@ -15,17 +15,25 @@ import (
 // the startup banner.
 const shortCommitLen = 12
 
+// exitCodeInterrupted is the exit status of a command that SIGINT or
+// SIGTERM stopped. It is 128 plus SIGINT's number, 2, which is what a
+// shell reports for a command stopped by Ctrl-C.
+const exitCodeInterrupted = 130
+
 // Entry is the main entry point for the CLI application.
-// It prints the startup banner to stdout (unless a banner-suppressing
+// It prints the startup banner to stderr (unless a banner-suppressing
 // flag is present in os.Args — see bannerSuppressedInArgs), executes the
 // root cobra command, and routes any returned error through the
 // ui.Writer so the user sees a properly formatted "🛑 ERROR:" line.
+// The banner goes to stderr because stdout carries only the output the
+// user asked for, such as a completion script or a `config get` value.
 //
-// It returns the process exit code (0 on success, 1 on error) rather
-// than calling os.Exit, so that main's deferred profile writers run
-// before the process ends. See run in cmd/vaultik/main.go.
+// It returns the process exit code (0 on success, 130 when interrupted,
+// 1 on any other error) rather than calling os.Exit, so that main's
+// deferred profile writers run before the process ends. See run in
+// cmd/vaultik/main.go.
 func Entry() int {
-	emitStartupBanner(os.Args[1:], os.Stdout)
+	emitStartupBanner(os.Args[1:], os.Stderr)
 
 	rootCmd := NewRootCommand()
 	rootCmd.SilenceErrors = true
@@ -33,14 +41,20 @@ func Entry() int {
 	err := rootCmd.Execute()
 	if err != nil {
 		// An operation that ran inside the fx app has already reported
-		// its own failure (and suppressed it under --json); errReported
-		// says so. Printing it again here would double the error line.
+		// its own failure (`snapshot verify --json` puts it in the
+		// document instead); errReported says so. Printing it again
+		// here would double the error line.
 		// Every other error — bad arguments, a config that would not
-		// load — reaches Entry unreported, so it is shown here.
+		// load, an interrupt — reaches Entry unreported, so it is shown
+		// here.
 		if !errors.Is(err, errReported) {
 			ReportErrorf("%s", err.Error())
 		}
 
+		if errors.Is(err, errInterrupted) {
+			return exitCodeInterrupted
+		}
+
 		return 1
 	}
 
@@ -49,9 +63,8 @@ func Entry() int {
 
 // emitStartupBanner writes the startup banner to w unless args (the
 // argument vector with the program name already stripped) contains a
-// flag that suppresses it. Split out of Entry so that the decision — the
-// only thing standing between a --json invocation and a parseable
-// stdout — is reachable from a test without running the whole CLI.
+// flag that suppresses it. Split out of Entry so that the decision is
+// reachable from a test without running the whole CLI.
 func emitStartupBanner(args []string, w io.Writer) {
 	if bannerSuppressedInArgs(args) {
 		return
@@ -86,8 +99,7 @@ func ReportErrorf(format string, args ...any) {
 // --json is a subcommand flag rather than a persistent one, but so is
 // --cron (it exists only on `snapshot create`), so this adds no new
 // class of imprecision. The only cost of a false positive is a missing
-// decorative banner; the cost of a false negative is a corrupt document
-// on stdout, so the scan errs deliberately in that direction.
+// decorative banner.
 func bannerSuppressedInArgs(args []string) bool {
 	for _, a := range args {
 		if a == "--" {

internal/cli/entry_banner_test.go

@@ -36,23 +36,14 @@ const (
 	// strips it before scanning, so it has to be present.
 	programName = "vaultik"
 
-	// someSnapshotID is any snapshot identifier: these tests never run
-	// the command, so it only has to occupy the positional argument.
+	// someSnapshotID only fills the positional argument; no test needs
+	// the snapshot to exist.
 	someSnapshotID = "host_2026-01-01T00:00:00Z"
 )
 
-// placeholderJSONDocument stands in for whatever document a --json
-// command writes to stdout. `snapshot list --json` with no snapshots
-// prints exactly this; the other --json commands print an object rather
-// than an array, but this test is not about their shape. It is about
-// what is on stdout *before* them, which is the same for all of them
-// because Entry prints the banner before cobra has parsed anything and
-// therefore before it can know which command is running.
-const placeholderJSONDocument = "[]\n"
-
 // jsonArgumentVectors are the argument vectors of every --json
 // invocation the CLI accepts, with the program name stripped exactly as
-// Entry strips it. Each one must leave stdout untouched by the banner.
+// Entry strips it. Each one must suppress the banner.
 //
 //nolint:gochecknoglobals // read-only test fixture shared by two tests
 var jsonArgumentVectors = map[string][]string{
@@ -74,39 +65,23 @@ var jsonArgumentVectors = map[string][]string{
 	},
 }
 
-// TestJSONInvocationStdoutIsExactlyOneDocument is the CLI-layer
-// regression guard for issue #106: `vaultik snapshot list --json | jq`
-// must work with no other flags.
-//
-// internal/vaultik's TestListSnapshots_JSONStdoutIsOnlyTheDocument
-// guards the same contract one layer down, but it calls the library
-// function directly and so cannot see Entry, which is where the
-// contamination was: the startup banner is written to stdout before
-// cobra parses anything, and the suppression scan did not know about
-// --json. The two banner lines and the blank line landed ahead of the
-// document and `jq` refused the result.
-//
-// The document is a constant here because this test is about the
-// argument vectors, one per --json command; the one that runs a real
-// command end to end is TestEntryJSONStdoutIsExactlyOneDocument below.
-func TestJSONInvocationStdoutIsExactlyOneDocument(t *testing.T) {
+// TestJSONInvocationSuppressesBanner checks that every --json
+// invocation suppresses the startup banner, as the README says --json
+// does along with --quiet and --cron. The scan is over the raw argument
+// vector, so each position and spelling of --json is listed.
+func TestJSONInvocationSuppressesBanner(t *testing.T) {
 	t.Parallel()
 
 	for name, argv := range jsonArgumentVectors {
 		t.Run(name, func(t *testing.T) {
 			t.Parallel()
 
-			var stdout bytes.Buffer
+			var banner bytes.Buffer
 
-			emitStartupBanner(argv, &stdout)
+			emitStartupBanner(argv, &banner)
 
-			require.Empty(t, stdout.String(),
-				"nothing may reach stdout ahead of a --json document")
-
-			_, err := stdout.WriteString(placeholderJSONDocument)
-			require.NoError(t, err)
-
-			requireExactlyOneJSONDocument(t, stdout.String())
+			assert.Empty(t, banner.String(),
+				"--json suppresses the banner")
 		})
 	}
 }
@@ -127,11 +102,11 @@ func TestBannerStillPrintedWithoutSuppressingFlag(t *testing.T) {
 		t.Run(name, func(t *testing.T) {
 			t.Parallel()
 
-			var stdout bytes.Buffer
+			var banner bytes.Buffer
 
-			emitStartupBanner(argv, &stdout)
+			emitStartupBanner(argv, &banner)
 
-			assert.Contains(t, stdout.String(), "starting up at",
+			assert.Contains(t, banner.String(), "starting up at",
 				"the banner belongs on invocations that did not opt out")
 		})
 	}
@@ -247,9 +222,7 @@ func TestEntryJSONStdoutIsExactlyOneDocument(t *testing.T) {
 // captureProcessStdout redirects the process's own stdout to a pipe for
 // the duration of fn and returns what was written to it. The redirection
 // has to be at the file-descriptor level rather than through an injected
-// writer, because the banner and the JSON encoder reach os.Stdout
-// independently and the point of the test is that both land in the same
-// place.
+// writer, because the commands Entry runs reach os.Stdout directly.
 //
 // Not parallel-safe: os.Stdout is process-global.
 func captureProcessStdout(t *testing.T, fn func()) string {

internal/cli/entry_interrupt_test.go

@@ -0,0 +1,203 @@
+package cli //nolint:testpackage // shares runEntry and the argument constants
+
+import (
+	"fmt"
+	"net/http"
+	"net/http/httptest"
+	"os"
+	"os/signal"
+	"path/filepath"
+	"strings"
+	"testing"
+	"time"
+
+	"github.com/adrg/xdg"
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+// stalledStoreConfig is hermeticConfig with an s3:// destination store
+// in place of the file:// one. The server behind it accepts any
+// credentials.
+const stalledStoreConfig = `age_recipients:
+  - age1278m9q7dp3chsh2dcy82qk27v047zywyvtxwnj4cvt0z65jw6a7q5dqhfj
+snapshots:
+  test:
+    paths:
+      - %s
+storage_url: s3://bucket?endpoint=%s&ssl=false
+s3:
+  access_key_id: key
+  secret_access_key: secret
+index_path: %s
+hostname: test-host
+`
+
+// interruptRepeat is how often interruptOnFirstRequest sends SIGINT.
+const interruptRepeat = 50 * time.Millisecond
+
+// TestEntryInterruptedRun sends SIGINT to the test process while a
+// command waits on the destination store, and checks that Entry returns
+// 130 and prints one line on stderr saying the run was interrupted. The
+// store is a local HTTP server that holds every request open, so the
+// command is always mid-operation when the signal arrives. The two
+// cases cover --cron and --json, which silence other output.
+//
+// Not parallel: it signals the process and replaces os.Args, os.Stdout,
+// os.Stderr and the xdg globals.
+//
+//nolint:paralleltest // signals the process and replaces process globals
+func TestEntryInterruptedRun(t *testing.T) {
+	for _, testCase := range []struct {
+		name string
+		args []string
+	}{
+		{
+			name: "snapshot create --cron",
+			args: []string{cmdSnapshot, cmdCreate, "--cron"},
+		},
+		{
+			name: "snapshot verify --json",
+			args: []string{cmdSnapshot, cmdVerify, someSnapshotID, flagJSON},
+		},
+	} {
+		t.Run(testCase.name, func(t *testing.T) {
+			endpoint, requestArrived := startStalledStore(t)
+			configPath := writeStalledStoreConfig(t, endpoint)
+			interruptOnFirstRequest(t, requestArrived)
+
+			code, _, stderr := runEntry(t,
+				append([]string{flagConfig, configPath}, testCase.args...)...)
+
+			assert.Equal(t, 130, code)
+			assert.Equal(t, 1,
+				strings.Count(stderr, errInterrupted.Error()), stderr)
+		})
+	}
+}
+
+// interruptOnFirstRequest sends SIGINT to the test process every
+// interruptRepeat, from the first request to the destination store until
+// the test ends. One signal is not enough: the command can reach the
+// store before fx has started catching signals. The test catches SIGINT
+// too, so that a signal fx is not catching does not kill the test
+// binary.
+func interruptOnFirstRequest(t *testing.T, requestArrived <-chan struct{}) {
+	t.Helper()
+
+	self, err := os.FindProcess(os.Getpid())
+	require.NoError(t, err)
+
+	caught := make(chan os.Signal, 1)
+	signal.Notify(caught, os.Interrupt)
+
+	testEnded := make(chan struct{})
+	senderDone := make(chan struct{})
+
+	// Stop catching SIGINT only after the sender has returned. The sender
+	// waits for each SIGINT it sends to arrive on caught; one still on
+	// its way after signal.Stop would kill the test binary.
+	t.Cleanup(func() {
+		close(testEnded)
+		<-senderDone
+		signal.Stop(caught)
+	})
+
+	go func() {
+		defer close(senderDone)
+
+		select {
+		case <-requestArrived:
+		case <-testEnded:
+			return
+		}
+
+		ticker := time.NewTicker(interruptRepeat)
+		defer ticker.Stop()
+
+		for {
+			// Empty caught, so that the receive below waits for this
+			// SIGINT rather than an earlier one.
+			select {
+			case <-caught:
+			default:
+			}
+
+			sendErr := self.Signal(os.Interrupt)
+			if sendErr != nil {
+				t.Errorf("sending SIGINT: %v", sendErr)
+
+				return
+			}
+
+			<-caught
+
+			select {
+			case <-testEnded:
+				return
+			case <-ticker.C:
+			}
+		}
+	}()
+}
+
+// startStalledStore starts an HTTP server that never answers: each
+// request is held until the client gives up on it or the test ends.
+// It returns the server's host:port and a channel that receives a value
+// when the first request arrives.
+func startStalledStore(t *testing.T) (string, <-chan struct{}) {
+	t.Helper()
+
+	requestArrived := make(chan struct{}, 1)
+	release := make(chan struct{})
+
+	server := httptest.NewServer(http.HandlerFunc(
+		func(_ http.ResponseWriter, r *http.Request) {
+			select {
+			case requestArrived <- struct{}{}:
+			default:
+			}
+
+			select {
+			case <-r.Context().Done():
+			case <-release:
+			}
+		}))
+
+	// Cleanups run last-registered first, so release lets any held
+	// request return before Close waits for it.
+	t.Cleanup(server.Close)
+	t.Cleanup(func() { close(release) })
+
+	return server.Listener.Addr().String(), requestArrived
+}
+
+// writeStalledStoreConfig writes a config whose destination store is the
+// server at endpoint and whose snapshot source holds one small file, so
+// that `snapshot create` has a blob to upload. Returns the config path.
+func writeStalledStoreConfig(t *testing.T, endpoint string) string {
+	t.Helper()
+
+	dir := t.TempDir()
+	configPath := filepath.Join(dir, "config.yml")
+	sourceDir := filepath.Join(dir, "source")
+
+	require.NoError(t, os.Mkdir(sourceDir, 0o750))
+	require.NoError(t, os.WriteFile(filepath.Join(sourceDir, "file.txt"),
+		[]byte("contents"), 0o600))
+
+	contents := fmt.Sprintf(stalledStoreConfig,
+		sourceDir, endpoint, filepath.Join(dir, "index.sqlite"))
+
+	require.NoError(t,
+		os.WriteFile(configPath, []byte(contents), configFileMode))
+
+	// The PID lock lives under xdg.DataHome, which xdg resolves at
+	// package init; point it at the temp dir so the test neither
+	// touches nor collides with the real one.
+	t.Setenv("XDG_DATA_HOME", filepath.Join(dir, "data"))
+	xdg.Reload()
+	t.Cleanup(xdg.Reload)
+
+	return configPath
+}

internal/cli/entry_prune_json_test.go

@@ -101,7 +101,8 @@ func TestEntryPruneJSONStdoutIsExactlyOneDocument(t *testing.T) {
 // writeHermeticPruneConfig builds a config over a temp directory with an
 // empty destination directory and, if seedStale is set, creates the
 // index database up front with one snapshot record that has no
-// counterpart on the destination store. Returns the config path.
+// counterpart on the destination store, and gives the destination the
+// marker a backup writes. Returns the config path.
 func writeHermeticPruneConfig(t *testing.T, seedStale bool) string {
 	t.Helper()
 
@@ -131,6 +132,11 @@ func writeHermeticPruneConfig(t *testing.T, seedStale bool) string {
 
 	if seedStale {
 		seedStaleSnapshotRecord(t, indexPath)
+
+		// While the local index holds a snapshot, prune fails on a
+		// destination without the marker a backup writes.
+		require.NoError(t, os.WriteFile(
+			filepath.Join(storeDir, "vaultik-destination.txt"), nil, 0o600))
 	}
 
 	return configPath

internal/cli/entry_snapshot_create_prune_test.go

@@ -0,0 +1,108 @@
+package cli //nolint:testpackage // shares runEntry and the hermetic config helpers
+
+import (
+	"os"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+// Flags of `snapshot create` used to build argument vectors below.
+const (
+	flagPrune         = "--prune"
+	flagKeepNewerThan = "--keep-newer-than"
+)
+
+// TestEntrySnapshotCreateRejectsKeepNewerThanBeforeBackup checks that a
+// --keep-newer-than the post-backup prune could not use stops `snapshot
+// create` before the backup: the command fails and the destination
+// store stays empty. It used to be read only by the prune, after the
+// snapshot was uploaded, and without --prune it was ignored.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout, os.Stderr and the xdg globals
+func TestEntrySnapshotCreateRejectsKeepNewerThanBeforeBackup(t *testing.T) {
+	for _, testCase := range []struct {
+		name string
+		args []string
+	}{
+		{
+			name: "decimal in a day count",
+			args: []string{flagPrune, flagKeepNewerThan, "1.5d"},
+		},
+		{
+			name: "unknown unit",
+			args: []string{flagPrune, flagKeepNewerThan, "4x"},
+		},
+		{
+			name: "without --prune",
+			args: []string{flagKeepNewerThan, "4w"},
+		},
+	} {
+		t.Run(testCase.name, func(t *testing.T) {
+			configPath, storeDir := writeBackupConfig(t)
+
+			code, _, _ := runEntry(t, append(
+				[]string{flagConfig, configPath, cmdSnapshot, cmdCreate},
+				testCase.args...)...)
+
+			assert.Equal(t, 1, code)
+
+			stored, err := os.ReadDir(storeDir)
+			require.NoError(t, err)
+			assert.Empty(t, stored, "nothing may be uploaded")
+		})
+	}
+}
+
+// TestEntrySnapshotCreateReportsPostBackupPruneFailure makes the
+// post-backup prune fail after a good backup, by planting a manifest
+// that cannot be decoded, and checks that the failure is reported as the
+// prune's and not as a failed snapshot creation.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout, os.Stderr and the xdg globals
+func TestEntrySnapshotCreateReportsPostBackupPruneFailure(t *testing.T) {
+	configPath, storeDir := writeBackupConfig(t)
+
+	// A remote key is 64 lowercase hex characters. The prune reads every
+	// manifest on the store and fails on one it cannot decode.
+	plantedDir := filepath.Join(storeDir, "metadata", strings.Repeat("a", 64))
+	require.NoError(t, os.MkdirAll(plantedDir, 0o750))
+	require.NoError(t, os.WriteFile(
+		filepath.Join(plantedDir, "manifest.json.zst"),
+		[]byte("not a valid manifest"), 0o600))
+
+	code, _, stderr := runEntry(t,
+		flagConfig, configPath, cmdSnapshot, cmdCreate, flagPrune)
+
+	assert.Equal(t, 1, code)
+	assert.Contains(t, stderr, "Backup completed, but post-backup prune failed")
+	assert.NotContains(t, stderr, "Snapshot creation failed")
+
+	snapshots, err := os.ReadDir(filepath.Join(storeDir, "metadata"))
+	require.NoError(t, err)
+	assert.Len(t, snapshots, 2,
+		"the new snapshot is on the store beside the planted one")
+}
+
+// writeBackupConfig builds a hermetic config with one small file in its
+// source directory and an empty destination store directory. Returns the
+// config path and the store directory.
+func writeBackupConfig(t *testing.T) (string, string) {
+	t.Helper()
+
+	configPath := writeHermeticPruneConfig(t, false)
+
+	// writeHermeticPruneConfig puts the source and store directories
+	// beside the config file.
+	dir := filepath.Dir(configPath)
+	sourceDir := filepath.Join(dir, "source")
+
+	require.NoError(t, os.Mkdir(sourceDir, 0o750))
+	require.NoError(t, os.WriteFile(
+		filepath.Join(sourceDir, "file.txt"), []byte("hello"), 0o600))
+
+	return configPath, filepath.Join(dir, "store")
+}

internal/cli/entry_status_test.go

@@ -15,8 +15,8 @@ import (
 // run, so a failing command must come back with a non-zero code rather
 // than ending the process here.
 //
-// Stdout is captured only to keep the banner and command output off the
-// test log; the assertion is on the returned code.
+// Stdout and stderr are captured only to keep the banner and command
+// output off the test log; the assertion is on the returned code.
 //
 //nolint:paralleltest // replaces os.Args and rootFlags
 func TestEntryReturnsStatusCode(t *testing.T) {
@@ -50,7 +50,7 @@ func TestEntryReturnsStatusCode(t *testing.T) {
 
 			var code int
 
-			_ = captureProcessStdout(t, func() { code = Entry() })
+			_, _ = captureProcessStdoutAndStderr(t, func() { code = Entry() })
 
 			assert.Equal(t, testCase.want, code)
 		})

internal/cli/entry_stdout_stderr_test.go

@@ -0,0 +1,200 @@
+package cli //nolint:testpackage // shares hermeticConfig and the capture helpers
+
+import (
+	"context"
+	"encoding/json"
+	"fmt"
+	"log/slog"
+	"os"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	"github.com/adrg/xdg"
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+	"sneak.berlin/go/vaultik/internal/database"
+)
+
+// TestEntryCompletionStdoutIsTheScript runs `vaultik completion bash`,
+// whose stdout the README tells the user to source. The script has to
+// start on the first line.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout and os.Stderr
+func TestEntryCompletionStdoutIsTheScript(t *testing.T) {
+	code, stdout, _ := runEntry(t, "completion", "bash")
+
+	require.Equal(t, 0, code)
+
+	firstLine, _, _ := strings.Cut(stdout, "\n")
+	assert.True(t, strings.HasPrefix(firstLine, "# bash completion"),
+		"the first line of stdout must be the script's, got %q", firstLine)
+}
+
+// TestEntryConfigGetStdoutIsTheValue runs `vaultik config get`, whose
+// stdout a script reads as the value and nothing else.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout and os.Stderr
+func TestEntryConfigGetStdoutIsTheValue(t *testing.T) {
+	configPath := filepath.Join(t.TempDir(), "config.yml")
+	require.NoError(t, os.WriteFile(configPath,
+		[]byte("hostname: test-host\n"), configFileMode))
+
+	code, stdout, _ := runEntry(t,
+		flagConfig, configPath, "config", "get", "hostname")
+
+	require.Equal(t, 0, code)
+	assert.Equal(t, "test-host\n", stdout)
+}
+
+// TestEntryJSONFailureIsReportedOnStderr runs each --json command that
+// writes no document when it fails, against a destination it cannot
+// use. The error must reach stderr, and stdout must stay empty.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout, os.Stderr and the xdg globals
+func TestEntryJSONFailureIsReportedOnStderr(t *testing.T) {
+	for _, testCase := range []struct {
+		name         string
+		args         []string
+		wantOnStderr string
+	}{
+		{
+			name:         "remote info",
+			args:         []string{cmdRemote, cmdInfo, flagJSON},
+			wantOnStderr: "Failed to get remote info",
+		},
+		{
+			name:         "prune",
+			args:         []string{cmdPrune, flagJSON},
+			wantOnStderr: "Prune failed",
+		},
+		{
+			name:         "snapshot remove",
+			args:         []string{cmdSnapshot, cmdRemove, someSnapshotID, flagJSON},
+			wantOnStderr: "Failed to remove snapshot",
+		},
+	} {
+		t.Run(testCase.name, func(t *testing.T) {
+			configPath := writeUnusableDestinationConfig(t)
+
+			code, stdout, stderr := runEntry(t,
+				append([]string{flagConfig, configPath}, testCase.args...)...)
+
+			assert.Equal(t, 1, code)
+			assert.Empty(t, stdout,
+				"a failed --json command has no document to write")
+			assert.Contains(t, stderr, testCase.wantOnStderr,
+				"the failure must be reported on stderr")
+		})
+	}
+}
+
+// TestEntrySnapshotRemoveJSONWarningIsOnStderr runs `snapshot remove
+// --json` on a snapshot in the local index, against a destination
+// directory that does not exist. The command removes the snapshot from
+// the local index and still exits 0. Its stdout must hold the document
+// alone, with the warning about the destination store on stderr: the
+// command to run again once it is reachable, and the snapshot's ID in
+// the record's snapshot_id field.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout, os.Stderr and the xdg globals
+func TestEntrySnapshotRemoveJSONWarningIsOnStderr(t *testing.T) {
+	configPath, indexPath := writeMissingDestinationConfig(t)
+	seedStaleSnapshotRecord(t, indexPath)
+
+	code, stdout, stderr := runEntry(t, flagConfig, configPath,
+		cmdSnapshot, cmdRemove, stalePruneSnapshotID, flagJSON)
+
+	require.Equal(t, 0, code)
+	requireExactlyOneJSONDocument(t, stdout)
+
+	// stderr is a pipe here, so the logger writes one JSON record a line.
+	var warning map[string]any
+
+	for line := range strings.Lines(stderr) {
+		if strings.Contains(line,
+			"Could not remove snapshot metadata from remote storage") {
+			require.NoError(t, json.Unmarshal([]byte(line), &warning))
+		}
+	}
+
+	require.NotNil(t, warning, "the warning must reach stderr")
+	assert.Contains(t, warning[slog.MessageKey],
+		"run 'vaultik snapshot remove' with the snapshot's ID again")
+	assert.Equal(t, stalePruneSnapshotID, warning["snapshot_id"])
+}
+
+// writeMissingDestinationConfig builds a config whose destination
+// directory does not exist. Returns the config path and the path of
+// its local index, which is not created here.
+func writeMissingDestinationConfig(t *testing.T) (string, string) {
+	t.Helper()
+
+	dir := t.TempDir()
+	configPath := filepath.Join(dir, "config.yml")
+	indexPath := filepath.Join(dir, "index.sqlite")
+
+	contents := fmt.Sprintf(hermeticConfig,
+		filepath.Join(dir, "source"),
+		filepath.Join(dir, "missing-store"),
+		indexPath)
+
+	require.NoError(t,
+		os.WriteFile(configPath, []byte(contents), configFileMode))
+
+	// The PID lock lives under xdg.DataHome, which xdg resolves at
+	// package init; point it at the temp dir so the test neither
+	// touches nor collides with the real one.
+	t.Setenv("XDG_DATA_HOME", filepath.Join(dir, "data"))
+	xdg.Reload()
+	t.Cleanup(xdg.Reload)
+
+	return configPath, indexPath
+}
+
+// writeUnusableDestinationConfig builds a config whose destination
+// directory does not exist, which fails `remote info`, and whose local
+// index is bound to another destination, which fails `prune` and
+// `snapshot remove` (a missing destination alone only makes `snapshot
+// remove` warn). Returns the config path.
+func writeUnusableDestinationConfig(t *testing.T) string {
+	t.Helper()
+
+	configPath, indexPath := writeMissingDestinationConfig(t)
+
+	ctx := context.Background()
+
+	db, err := database.New(ctx, indexPath)
+	require.NoError(t, err)
+
+	defer func() { require.NoError(t, db.Close()) }()
+
+	require.NoError(t, database.NewRepositories(db).LocalMeta.Set(ctx,
+		database.LocalMetaKeyStorageURL, "file://"+t.TempDir()))
+
+	return configPath
+}
+
+// runEntry runs Entry with args after the program name and returns its
+// exit code and what it wrote to stdout and stderr.
+//
+// Not parallel-safe: it replaces os.Args, os.Stdout and os.Stderr.
+func runEntry(t *testing.T, args ...string) (int, string, string) {
+	t.Helper()
+
+	previousArgs := os.Args
+
+	t.Cleanup(func() {
+		os.Args = previousArgs
+		rootFlags = RootFlags{}
+	})
+
+	os.Args = append([]string{programName}, args...)
+
+	var code int
+
+	stdout, stderr := captureProcessStdoutAndStderr(t,
+		func() { code = Entry() })
+
+	return code, stdout, stderr
+}

internal/cli/json_help_test.go

@@ -0,0 +1,24 @@
+package cli //nolint:testpackage // exercises the unexported command constructor
+
+import (
+	"testing"
+
+	"github.com/spf13/cobra"
+	"github.com/stretchr/testify/assert"
+)
+
+// TestJSONHelpSaysConfirmationPromptIsSkipped checks that the --json help
+// of `snapshot remove` and `prune` says the flag skips the confirmation
+// prompt. Both delete without asking under --json, since a prompt on
+// stdout would break the JSON document.
+func TestJSONHelpSaysConfirmationPromptIsSkipped(t *testing.T) {
+	t.Parallel()
+
+	for _, cmd := range []*cobra.Command{
+		newSnapshotRemoveCommand(),
+		NewPruneCommand(),
+	} {
+		assert.Contains(t, cmd.Flags().Lookup("json").Usage,
+			"skips the confirmation prompt", cmd.Name())
+	}
+}

internal/cli/prune.go

@@ -22,9 +22,11 @@ scans every snapshot manifest in the destination store, builds the
 set of still-referenced blob hashes, and deletes any blob not in that
 set.
 
-Snapshot create --prune and snapshot remove run the same cleanup
-automatically; this command is the manual entry point for the same
-work (e.g. after a crashed backup or to reclaim storage).`,
+Snapshot create --prune runs the same cleanup automatically; this
+command is the manual entry point for the same work (e.g. after a
+crashed backup or to reclaim storage). Snapshot remove leaves blobs in
+place; run this command afterwards to delete the ones no longer
+referenced.`,
 		Args: cobra.NoArgs,
 		RunE: func(cmd *cobra.Command, _ []string) error {
 			// Use unified config resolution
@@ -48,10 +50,6 @@ work (e.g. after a crashed backup or to reclaim storage).`,
 			}, func(v *vaultik.Vaultik) error {
 				return v.Prune(opts)
 			}, func(err error) {
-				if opts.JSON {
-					return
-				}
-
 				log.Error("Prune operation failed", "error", err)
 				ReportErrorf("Prune failed: %v", err)
 			})
@@ -59,7 +57,8 @@ work (e.g. after a crashed backup or to reclaim storage).`,
 	}
 
 	cmd.Flags().BoolVar(&opts.Force, "force", false, "Skip confirmation prompt")
-	cmd.Flags().BoolVar(&opts.JSON, "json", false, "Output pruning stats as JSON")
+	cmd.Flags().BoolVar(&opts.JSON, "json", false,
+		"Output pruning stats as JSON; skips the confirmation prompt, as --force does")
 
 	return cmd
 }

internal/cli/remote.go

@@ -45,7 +45,7 @@ This is destructive and irreversible. Requires --force.`,
 				return errNukeNeedsForce
 			}
 
-			return runVaultikApp(cmd, mutating, false, false, "Remote nuke failed",
+			return runVaultikApp(cmd, mutating, false, "Remote nuke failed",
 				func(v *vaultik.Vaultik) error {
 					return v.NukeRemote(true)
 				})
@@ -92,10 +92,6 @@ func newRemoteInfoCommand() *cobra.Command {
 			}, func(v *vaultik.Vaultik) error {
 				return v.RemoteInfo(jsonOutput)
 			}, func(err error) {
-				if jsonOutput {
-					return
-				}
-
 				log.Error("Failed to get remote info", "error", err)
 				ReportErrorf("Failed to get remote info: %v", err)
 			})

internal/cli/root.go

@@ -60,7 +60,8 @@ on the source system.`,
 	cmd.PersistentFlags().BoolVar(&rootFlags.SkipErrors, "skip-errors", false,
 		"Skip files that cannot be read when creating a snapshot, or "+
 			"that cannot be restored when restoring, instead of aborting "+
-			"(packing and storage errors still abort)")
+			"(packing and storage errors while creating a snapshot still "+
+			"abort)")
 
 	// Add subcommands
 	cmd.AddCommand(

internal/cli/snapshot.go

@@ -66,10 +66,16 @@ func newSnapshotCreateCommand() *cobra.Command {
 If snapshot names are provided, only those snapshots are created.
 If no names are provided, all configured snapshots are created.
 
-Config is located at /etc/vaultik/config.yml by default, but can be overridden by
-specifying a path using --config or by setting VAULTIK_CONFIG to a path.`,
+The config is read from the path given by --config or VAULTIK_CONFIG;
+otherwise from the platform config directory (~/.config/vaultik/config.yml
+on Linux), then /etc/vaultik/config.yml.`,
 		Args: cobra.ArbitraryArgs,
 		RunE: func(cmd *cobra.Command, args []string) error {
+			err := opts.Validate()
+			if err != nil {
+				return err
+			}
+
 			// Pass snapshot names from args
 			opts.Snapshots = args
 			// --skip-errors is a global flag on the root command.
@@ -96,6 +102,13 @@ specifying a path using --config or by setting VAULTIK_CONFIG to a path.`,
 			}, func(v *vaultik.Vaultik) error {
 				return v.CreateSnapshot(opts)
 			}, func(err error) {
+				if errors.Is(err, vaultik.ErrPostBackupPruneFailed) {
+					log.Error("Post-backup prune failed", "error", err)
+					ReportErrorf("Backup completed, but %v", err)
+
+					return
+				}
+
 				log.Error("Snapshot creation failed", "error", err)
 				ReportErrorf("Snapshot creation failed: %v", err)
 			})
@@ -126,7 +139,7 @@ func newSnapshotListCommand() *cobra.Command {
 		Long:    "Lists all snapshots with their ID, timestamp, and compressed size",
 		Args:    cobra.NoArgs,
 		RunE: func(cmd *cobra.Command, _ []string) error {
-			return runVaultikApp(cmd, readOnly, false, false,
+			return runVaultikApp(cmd, readOnly, false,
 				"Failed to list snapshots",
 				func(v *vaultik.Vaultik) error {
 					return v.ListSnapshots(jsonOutput)
@@ -162,7 +175,7 @@ restrict the operation to specific snapshot names.`,
 				return errPurgeCriteriaBoth
 			}
 
-			return runVaultikApp(cmd, mutating, false, false,
+			return runVaultikApp(cmd, mutating, false,
 				"Failed to purge snapshots",
 				func(v *vaultik.Vaultik) error {
 					return v.PurgeSnapshotsWithOptions(opts)
@@ -254,18 +267,23 @@ manifest (the destination store may hold snapshots this host doesn't
 know about), which is what 'vaultik prune' does. On success the command
 prints the exact 'vaultik prune' invocation to run as a follow-up.
 
+An ID that names no snapshot in the local index or on the destination
+store is an error.
+
 Use --local-only to skip the remote half (e.g. when you want to forget a
-snapshot locally without touching the destination store).
+snapshot locally without touching the destination store); the snapshot
+must then be in the local index.
 
 If the remote is unreachable, the local-database removal still completes
-and a warning is emitted; rerun 'vaultik prune' once the destination store
-is reachable to finish remote cleanup.
+and a warning is emitted; run 'vaultik snapshot remove <snapshot-id>' again
+once the destination store is reachable to remove the snapshot's metadata
+from it ('vaultik prune' does not).
 
 To wipe the entire destination store and start over, use 'vaultik remote
 nuke --force' — it is the single supported entry point for that.`,
 		Args: requireSnapshotIDArg,
 		RunE: func(cmd *cobra.Command, args []string) error {
-			return runVaultikApp(cmd, mutating, opts.JSON, opts.JSON,
+			return runVaultikApp(cmd, mutating, opts.JSON,
 				"Failed to remove snapshot",
 				func(v *vaultik.Vaultik) error {
 					_, err := v.RemoveSnapshot(args[0], opts)
@@ -278,7 +296,8 @@ nuke --force' — it is the single supported entry point for that.`,
 	cmd.Flags().BoolVarP(&opts.Force, "force", "f", false, "Skip confirmation prompt")
 	cmd.Flags().BoolVar(&opts.DryRun, "dry-run", false,
 		"Show what would be removed without removing")
-	cmd.Flags().BoolVar(&opts.JSON, "json", false, "Output result as JSON")
+	cmd.Flags().BoolVar(&opts.JSON, "json", false,
+		"Output result as JSON; skips the confirmation prompt, as --force does")
 	cmd.Flags().BoolVar(&opts.LocalOnly, "local-only", false,
 		"Skip remote cleanup; only touch the local index")
 

internal/config/config.go

@@ -33,18 +33,19 @@ const secretKeyPrefix = "AGE-SECRET-KEY-"
 const (
 	defaultBlobSizeLimit    = Size(10 * 1024 * 1024 * 1024) // 10GB
 	defaultChunkSize        = Size(10 * 1024 * 1024)        // 10MB
-	defaultS3PartSize       = Size(5 * 1024 * 1024)         // 5MB
+	defaultS3PartSize       = Size(5 * 1024 * 1024)         // 5MiB
 	defaultCompressionLevel = 3
 	minChunkSize            = 1024 * 1024 // 1MB
 	minCompressionLevel     = 1
 	maxCompressionLevel     = 19
+	// S3 accepts a multipart upload part from 5MiB to 5GiB.
+	minS3PartSize = 5 * 1024 * 1024
+	maxS3PartSize = 5 * 1024 * 1024 * 1024
 )
 
 // Sentinel validation errors.
 var (
-	errNoConfigPath    = errors.New("config path not provided")
-	errNoAgeRecipients = errors.New(
-		"at least one age_recipient is required (generate with: age-keygen)")
+	errNoConfigPath         = errors.New("config path not provided")
 	errRecipientIsSecretKey = errors.New(
 		"an age secret key was given where a public key (age1...) belongs")
 	errRecipientNotX25519 = errors.New(
@@ -57,8 +58,12 @@ var (
 		"blob_size_limit must be at least the largest chunk the chunker can " +
 			"emit (chunk_size times the FastCDC size spread)")
 	errBadCompression   = errors.New("compression_level must be between 1 and 19")
+	errBadS3PartSize    = errors.New("s3.part_size must be between 5MiB and 5GiB")
 	errBadStorageScheme = errors.New(
 		"storage_url must start with s3://, file://, or rclone://")
+	errFileURLNotAbsolute = errors.New(
+		"a file:// storage_url needs an absolute path, " +
+			"as in file:///path/to/backup")
 	errStorageNotConfigured = errors.New(
 		"storage not configured; set storage_url or provide s3.endpoint + " +
 			"s3.bucket + credentials")
@@ -246,6 +251,7 @@ func Load(path string) (*Config, error) {
 		ChunkSize:        defaultChunkSize,
 		IndexPath:        filepath.Join(xdg.DataHome, appName, "index.sqlite"),
 		CompressionLevel: defaultCompressionLevel,
+		S3:               S3Config{PartSize: defaultS3PartSize},
 	}
 
 	// Convert smartconfig data to YAML then unmarshal
@@ -296,17 +302,13 @@ func Load(path string) (*Config, error) {
 		cfg.S3.Region = "us-east-1"
 	}
 
-	if cfg.S3.PartSize == 0 {
-		cfg.S3.PartSize = defaultS3PartSize
-	}
-
 	// Check config file permissions (warn if world or group readable)
 	//nolint:gosec // G703: config path is operator-supplied by design
 	info, statErr := os.Stat(path)
 	if statErr == nil {
 		mode := info.Mode().Perm()
 		if mode&0044 != 0 { // group or world readable
-			log.Warn("Config file has insecure permissions (contains S3 credentials)",
+			log.Warn(cfg.readableByOthersWarning(),
 				"path", path,
 				"mode", fmt.Sprintf("%04o", mode),
 				"recommendation", "chmod 600 "+path)
@@ -323,9 +325,10 @@ func Load(path string) (*Config, error) {
 
 // Validate checks if the configuration is valid and complete.
 // It ensures all required fields are present and have valid values:
-//   - At least one age recipient must be specified, and every recipient must
-//     parse as an X25519 age1... public key (so a bad entry fails at load, not
-//     mid-backup); errors name the position, never the value
+//   - Every age recipient must parse as an X25519 age1... public key (so a
+//     bad entry fails at load, not mid-backup); errors name the position,
+//     never the value. An empty list is accepted, because only snapshot
+//     create needs a recipient and it checks for one itself
 //   - At least one snapshot must be configured with at least one path
 //   - Storage must be configured (either storage_url or s3.* fields)
 //   - Chunk size must be at least 1MB
@@ -333,13 +336,10 @@ func Load(path string) (*Config, error) {
 //     (chunk_size times chunker.ChunkSizeSpread), so a single-chunk blob never
 //     exceeds the configured limit
 //   - Compression level must be between 1 and 19
+//   - S3 part size must be between 5MiB and 5GiB, the part sizes S3 accepts
 //
 // Returns an error describing the first validation failure encountered.
 func (c *Config) Validate() error {
-	if len(c.AgeRecipients) == 0 {
-		return errNoAgeRecipients
-	}
-
 	for i, recipient := range c.AgeRecipients {
 		err := validateAgeRecipient(recipient)
 		if err != nil {
@@ -381,6 +381,11 @@ func (c *Config) Validate() error {
 		return errBadCompression
 	}
 
+	if c.S3.PartSize.Int64() < minS3PartSize ||
+		c.S3.PartSize.Int64() > maxS3PartSize {
+		return errBadS3PartSize
+	}
+
 	return nil
 }
 
@@ -416,6 +421,18 @@ func (c *Config) setAgeSecretKey() {
 	}
 }
 
+// readableByOthersWarning is the warning Load logs when others can read
+// the config file. It says "may contain" because the S3 credentials are
+// seen only after smartconfig has replaced any ${...} reference in the
+// file with its value, so a set credential need not be in the file.
+func (c *Config) readableByOthersWarning() string {
+	if c.S3.AccessKeyID != "" || c.S3.SecretAccessKey != "" {
+		return "Config file is readable by others and may contain S3 credentials"
+	}
+
+	return "Config file is readable by others"
+}
+
 // validateStorage validates storage configuration.
 // If StorageURL is set, it takes precedence. S3 URLs require credentials.
 // File URLs don't require any S3 configuration.
@@ -447,11 +464,18 @@ func (c *Config) validateStorage() error {
 
 // validateStorageURL validates URL-based storage configuration. File and
 // rclone URLs need no credentials; S3 URLs require the legacy s3.*
-// credential fields.
+// credential fields. A file URL must name an absolute path: a relative one
+// would resolve against the working directory, so the destination would
+// move with it.
 func (c *Config) validateStorageURL() error {
 	switch {
 	case strings.HasPrefix(c.StorageURL, "file://"):
-		// File storage doesn't need S3 credentials
+		// storage.ParseStorageURL applies the same rule, but config
+		// cannot import storage, which imports config.
+		if !strings.HasPrefix(c.StorageURL, "file:///") {
+			return errFileURLNotAbsolute
+		}
+
 		return nil
 	case strings.HasPrefix(c.StorageURL, "rclone://"):
 		// Rclone storage uses rclone's own config

internal/config/config_test.go

@@ -8,6 +8,7 @@ import (
 	"testing"
 
 	"sneak.berlin/go/vaultik/internal/chunker"
+	"sneak.berlin/go/vaultik/internal/log"
 )
 
 const (
@@ -166,6 +167,7 @@ func TestValidateBlobSizeLimit(t *testing.T) {
 			ChunkSize:        chunkSize,
 			BlobSizeLimit:    blobLimit,
 			CompressionLevel: 3,
+			S3:               S3Config{PartSize: defaultS3PartSize},
 		}
 	}
 
@@ -221,9 +223,153 @@ func TestValidateBlobSizeLimit(t *testing.T) {
 	}
 }
 
+// TestValidateS3PartSize checks that s3.part_size is held to the part sizes
+// S3 accepts, 5MiB to 5GiB, by changing only the part size of the test
+// config. "5MB" in the config file is 5,000,000 bytes, below the minimum.
+func TestValidateS3PartSize(t *testing.T) {
+	t.Parallel()
+
+	base, err := Load(os.Getenv("VAULTIK_CONFIG"))
+	if err != nil {
+		t.Fatalf("Failed to load config: %v", err)
+	}
+
+	tests := []struct {
+		name     string
+		partSize Size
+		wantErr  bool
+	}{
+		{
+			name:     "5MB is rejected",
+			partSize: 5_000_000,
+			wantErr:  true,
+		},
+		{
+			name:     "one byte below 5MiB is rejected",
+			partSize: minS3PartSize - 1,
+			wantErr:  true,
+		},
+		{
+			name:     "5MiB is accepted",
+			partSize: minS3PartSize,
+			wantErr:  false,
+		},
+		{
+			name:     "5GiB is accepted",
+			partSize: maxS3PartSize,
+			wantErr:  false,
+		},
+		{
+			name:     "one byte above 5GiB is rejected",
+			partSize: maxS3PartSize + 1,
+			wantErr:  true,
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			t.Parallel()
+
+			cfg := *base
+			cfg.S3.PartSize = tt.partSize
+
+			err := cfg.Validate()
+			if tt.wantErr {
+				if !errors.Is(err, errBadS3PartSize) {
+					t.Fatalf("Validate() error = %v, want errBadS3PartSize", err)
+				}
+
+				return
+			}
+
+			if err != nil {
+				t.Fatalf("Validate() unexpected error: %v", err)
+			}
+		})
+	}
+}
+
+// TestLoadS3PartSize checks that a config file without s3.part_size loads
+// with the 5MiB default, and that an explicit 0 fails at load like any other
+// part size S3 refuses.
+func TestLoadS3PartSize(t *testing.T) {
+	t.Parallel()
+
+	const withoutPartSize = "snapshots:\n" +
+		"  test:\n" +
+		"    paths: [/tmp/vaultik-test-source]\n" +
+		"storage_url: file:///tmp/vaultik-test-storage\n"
+
+	writeConfig := func(t *testing.T, text string) string {
+		t.Helper()
+
+		path := filepath.Join(t.TempDir(), "config.yml")
+
+		err := os.WriteFile(path, []byte(text), 0o600)
+		if err != nil {
+			t.Fatalf("write config: %v", err)
+		}
+
+		return path
+	}
+
+	t.Run("absent loads as 5MiB", func(t *testing.T) {
+		t.Parallel()
+
+		cfg, err := Load(writeConfig(t, withoutPartSize))
+		if err != nil {
+			t.Fatalf("Load() unexpected error: %v", err)
+		}
+
+		if cfg.S3.PartSize != defaultS3PartSize {
+			t.Errorf("s3.part_size = %d, want %d",
+				cfg.S3.PartSize, defaultS3PartSize)
+		}
+	})
+
+	t.Run("0 is rejected", func(t *testing.T) {
+		t.Parallel()
+
+		_, err := Load(writeConfig(t, withoutPartSize+"s3:\n  part_size: 0\n"))
+		if !errors.Is(err, errBadS3PartSize) {
+			t.Fatalf("Load() error = %v, want errBadS3PartSize", err)
+		}
+	})
+}
+
+// TestLoadRejectsRelativeFileURL checks that a file:// storage_url with a
+// relative path fails at load. Accepted, it would resolve against the
+// working directory, so a backup run from another directory would write
+// to a different destination and still succeed.
+func TestLoadRejectsRelativeFileURL(t *testing.T) {
+	t.Parallel()
+
+	const relativeConfig = "snapshots:\n" +
+		"  test:\n" +
+		"    paths: [/tmp/vaultik-test-source]\n" +
+		"storage_url: file://dest\n"
+
+	path := filepath.Join(t.TempDir(), "config.yml")
+
+	err := os.WriteFile(path, []byte(relativeConfig), 0o600)
+	if err != nil {
+		t.Fatalf("write config: %v", err)
+	}
+
+	_, err = Load(path)
+	if !errors.Is(err, errFileURLNotAbsolute) {
+		t.Fatalf("Load() error = %v, want errFileURLNotAbsolute", err)
+	}
+
+	if !strings.Contains(err.Error(), "absolute path") {
+		t.Errorf("error %q does not say to use an absolute path", err.Error())
+	}
+}
+
 // TestValidateAgeRecipients checks that recipients are parsed at config load
 // (a bad entry fails immediately, not mid-backup) and that no invalid entry —
-// least of all a pasted secret key — is echoed in the error.
+// least of all a pasted secret key — is echoed in the error. An empty list
+// loads, because only snapshot create needs a recipient.
 func TestValidateAgeRecipients(t *testing.T) {
 	t.Parallel()
 
@@ -235,6 +381,7 @@ func TestValidateAgeRecipients(t *testing.T) {
 			ChunkSize:        Size(10 * 1024 * 1024),
 			BlobSizeLimit:    Size(10 * 1024 * 1024 * 1024),
 			CompressionLevel: 3,
+			S3:               S3Config{PartSize: defaultS3PartSize},
 		}
 	}
 
@@ -244,7 +391,12 @@ func TestValidateAgeRecipients(t *testing.T) {
 		wantErr    bool
 	}{
 		{
-			name:       "config init placeholder is rejected",
+			name:       "no recipients is accepted",
+			recipients: nil,
+			wantErr:    false,
+		},
+		{
+			name:       "placeholder recipient is rejected",
 			recipients: []string{"age1REPLACE_WITH_YOUR_PUBLIC_KEY"},
 			wantErr:    true,
 		},
@@ -337,3 +489,125 @@ func TestAgeSecretKeySourceName(t *testing.T) {
 		})
 	}
 }
+
+// loadReadableConfig writes configYAML to a file that others can read,
+// loads it, and returns what the logger wrote to stderr meanwhile. The
+// logger writes to the os.Stderr it finds when it is initialized, so
+// os.Stderr is pointed at a file first. Not parallel-safe: os.Stderr and
+// the logger are process-global.
+func loadReadableConfig(t *testing.T, configYAML string) string {
+	t.Helper()
+
+	dir := t.TempDir()
+	configPath := filepath.Join(dir, "config.yml")
+	stderrPath := filepath.Join(dir, "stderr")
+
+	err := os.WriteFile(configPath, []byte(configYAML), 0o600)
+	if err != nil {
+		t.Fatalf("writing config: %v", err)
+	}
+
+	//nolint:gosec // G302: the test needs a config file others can read
+	err = os.Chmod(configPath, 0o644)
+	if err != nil {
+		t.Fatalf("chmod config: %v", err)
+	}
+
+	stderrFile, err := os.Create(stderrPath) //nolint:gosec // G304: test temp path
+	if err != nil {
+		t.Fatalf("creating stderr file: %v", err)
+	}
+
+	previous := os.Stderr
+	os.Stderr = stderrFile
+
+	log.Initialize(log.Config{})
+
+	_, loadErr := Load(configPath)
+
+	os.Stderr = previous
+
+	log.Initialize(log.Config{})
+
+	_ = stderrFile.Close()
+
+	if loadErr != nil {
+		t.Fatalf("Load() error = %v", loadErr)
+	}
+
+	captured, err := os.ReadFile(stderrPath) //nolint:gosec // G304: test temp path
+	if err != nil {
+		t.Fatalf("reading stderr file: %v", err)
+	}
+
+	return string(captured)
+}
+
+// TestLoadWarnsReadableConfigWithoutS3Credentials checks that a config
+// file others can read, holding no S3 credentials, is warned about
+// without a claim that it holds them.
+//
+//nolint:paralleltest // loadReadableConfig replaces os.Stderr
+func TestLoadWarnsReadableConfigWithoutS3Credentials(t *testing.T) {
+	stderr := loadReadableConfig(t, `
+storage_url: file:///var/backups/vaultik
+snapshots:
+  home:
+    paths:
+      - /home
+`)
+
+	if !strings.Contains(stderr, "Config file is readable by others") {
+		t.Errorf("expected a warning that the file is readable by others, got %q",
+			stderr)
+	}
+
+	if strings.Contains(stderr, "S3 credentials") {
+		t.Errorf("warning names S3 credentials the file does not set: %q", stderr)
+	}
+}
+
+// TestLoadWarnsReadableConfigWithS3Credentials checks that a config file
+// others can read and that sets S3 credentials, as values or as ${ENV:...}
+// references, is warned about as one that may contain them.
+//
+//nolint:paralleltest // loadReadableConfig replaces os.Stderr
+func TestLoadWarnsReadableConfigWithS3Credentials(t *testing.T) {
+	t.Setenv("VAULTIK_TEST_ACCESS_KEY_ID", "test-access-key")
+	t.Setenv("VAULTIK_TEST_SECRET_ACCESS_KEY", "test-secret-key")
+
+	configs := map[string]string{
+		"values": `
+storage_url: s3://bucket/prefix?endpoint=s3.example.com
+s3:
+  access_key_id: test-access-key
+  secret_access_key: test-secret-key
+snapshots:
+  home:
+    paths:
+      - /home
+`,
+		"references": `
+storage_url: s3://bucket/prefix?endpoint=s3.example.com
+s3:
+  access_key_id: ${ENV:VAULTIK_TEST_ACCESS_KEY_ID}
+  secret_access_key: ${ENV:VAULTIK_TEST_SECRET_ACCESS_KEY}
+snapshots:
+  home:
+    paths:
+      - /home
+`,
+	}
+
+	for name, configYAML := range configs {
+		t.Run(name, func(t *testing.T) {
+			stderr := loadReadableConfig(t, configYAML)
+
+			if !strings.Contains(stderr,
+				"Config file is readable by others and may contain S3 credentials") {
+				t.Errorf("expected a warning naming the S3 credentials, got %q",
+					stderr)
+			}
+		})
+	}
+}

internal/config/size.go

@@ -16,8 +16,6 @@ var (
 // Size represents a byte size that can be specified in configuration files.
 // It can unmarshal from both numeric values (interpreted as bytes) and
 // human-readable strings like "10MB", "2.5GB", or "1TB".
-//
-//nolint:recvcheck // UnmarshalYAML requires a pointer; String/Int64 are value reads
 type Size int64
 
 // UnmarshalYAML implements yaml.Unmarshaler for Size, allowing it to be

internal/database/chunk_files.go

@@ -220,7 +220,7 @@ func (r *ChunkFileRepository) CreateBatch(
 				cf.ChunkHash.String(), cf.FileID.String(), cf.FileOffset, cf.Length)
 		}
 
-		query += querySb183.String() //nolint:gosec // G202: appends "?" placeholders only
+		query += querySb183.String()
 
 		query += " ON CONFLICT(chunk_hash, file_id) DO NOTHING"
 

internal/database/chunks.go

@@ -98,7 +98,7 @@ func (r *ChunkRepository) GetByHashes(
 		args[i] = hash
 	}
 
-	query += querySb75.String() //nolint:gosec // G202: appends "?" placeholders only
+	query += querySb75.String()
 
 	query += ") ORDER BY chunk_hash"
 

internal/database/database.go

@@ -42,6 +42,10 @@ var schemaFS embed.FS
 // table itself. It is applied before the normal migration loop.
 const bootstrapVersion = 0
 
+// busyTimeoutMs is how long a connection to the index waits for another
+// connection's lock before failing with "database is locked".
+const busyTimeoutMs = 10000
+
 // DB represents the Vaultik local index database connection.
 // It uses SQLite to track file metadata, content-defined chunks, and blob associations.
 // The database enables incremental backups by detecting changed files and
@@ -94,10 +98,27 @@ func ParseMigrationVersion(filename string) (int, error) {
 	return version, nil
 }
 
+// indexDSN returns the driver DSN that opens the database at path. The
+// driver runs each _pragma parameter on every connection it opens and drops
+// any parameter it does not know without an error, so a setting written in
+// another form silently does nothing. In WAL mode one connection can write
+// while others read; the busy timeout makes a connection wait for a lock
+// instead of failing at once.
+func indexDSN(path string) string {
+	return fmt.Sprintf(
+		"%s?_pragma=busy_timeout(%d)&_pragma=journal_mode(WAL)"+
+			"&_pragma=synchronous(NORMAL)&_pragma=foreign_keys(1)",
+		path, busyTimeoutMs)
+}
+
 // New creates a new database connection at the specified path.
-// It creates the schema if needed and configures SQLite with WAL mode for
-// better concurrency. SQLite handles crash recovery automatically when
-// opening a database with journal/WAL files present.
+// It creates the schema if needed. Every connection runs in WAL mode with
+// a busy timeout and foreign keys on (see indexDSN), so a read-only command
+// can read the index while a backup writes to it. Committed rows can sit in
+// the -wal file beside the database until a checkpoint, so a copy of the
+// database file alone may miss them.
+// SQLite handles crash recovery automatically when opening a database with
+// journal/WAL files present.
 // The path parameter can be a file path for persistent storage or ":memory:"
 // for an in-memory database (useful for testing).
 func New(ctx context.Context, path string) (*DB, error) {
@@ -110,11 +131,7 @@ func New(ctx context.Context, path string) (*DB, error) {
 	// First attempt with standard WAL mode
 	log.Debug("Attempting to open database with WAL mode", "path", path)
 
-	conn, err := sql.Open(
-		"sqlite",
-		path+"?_journal_mode=WAL&_synchronous=NORMAL&_busy_timeout=10000"+
-			"&_locking_mode=NORMAL&_foreign_keys=ON",
-	)
+	conn, err := sql.Open("sqlite", indexDSN(path))
 	if err == nil {
 		configureConnPool(conn)
 
@@ -134,8 +151,8 @@ func New(ctx context.Context, path string) (*DB, error) {
 		_ = conn.Close()
 	}
 
-	// If first attempt failed, try with TRUNCATE mode to clear any locks
-	return openWithRecovery(ctx, path)
+	// If the first attempt failed, try once more
+	return retryOpen(ctx, path)
 }
 
 // configureConnPool serializes all database access through one connection.
@@ -147,18 +164,12 @@ func configureConnPool(conn *sql.DB) {
 	conn.SetMaxIdleConns(1)
 }
 
-// finishOpen enables foreign keys, wraps the connection, and applies any
-// pending migrations. On migration failure the connection is closed.
+// finishOpen wraps the connection and applies any pending migrations. On
+// migration failure the connection is closed.
 func finishOpen(ctx context.Context, conn *sql.DB, path string) (*DB, error) {
-	// Enable foreign keys explicitly
-	_, err := conn.ExecContext(ctx, "PRAGMA foreign_keys = ON")
-	if err != nil {
-		log.Warn("Failed to enable foreign keys", "path", path, "error", err)
-	}
-
 	db := &DB{conn: conn, path: path}
 
-	err = applyMigrations(ctx, conn)
+	err := applyMigrations(ctx, conn)
 	if err != nil {
 		_ = conn.Close()
 
@@ -168,21 +179,15 @@ func finishOpen(ctx context.Context, conn *sql.DB, path string) (*DB, error) {
 	return db, nil
 }
 
-// openWithRecovery retries opening the database in TRUNCATE journal mode to
-// clear stale locks, then switches back to WAL mode.
-func openWithRecovery(ctx context.Context, path string) (*DB, error) {
-	log.Info(
-		"Database appears locked, attempting recovery with TRUNCATE mode",
-		"path", path,
-	)
+// retryOpen makes a second attempt to open the database, with the same
+// settings, after the first attempt failed, for example because another
+// process held a lock for longer than the busy timeout.
+func retryOpen(ctx context.Context, path string) (*DB, error) {
+	log.Info("Database appears locked, retrying open", "path", path)
 
-	conn, err := sql.Open(
-		"sqlite",
-		path+"?_journal_mode=TRUNCATE&_synchronous=NORMAL&_busy_timeout=10000"+
-			"&_foreign_keys=ON",
-	)
+	conn, err := sql.Open("sqlite", indexDSN(path))
 	if err != nil {
-		return nil, fmt.Errorf("opening database in recovery mode: %w", err)
+		return nil, fmt.Errorf("opening database on retry: %w", err)
 	}
 
 	configureConnPool(conn)
@@ -190,28 +195,18 @@ func openWithRecovery(ctx context.Context, path string) (*DB, error) {
 	err = conn.PingContext(ctx)
 	if err != nil {
 		log.Debug(
-			"Failed to ping database in recovery mode, closing",
+			"Failed to ping database on retry, closing",
 			"path", path, "error", err,
 		)
 
 		_ = conn.Close()
 
 		return nil, fmt.Errorf(
-			"database still locked after recovery attempt: %w",
+			"database still locked on retry: %w",
 			err,
 		)
 	}
 
-	log.Debug("Database opened in TRUNCATE mode", "path", path)
-
-	// Switch back to WAL mode
-	log.Debug("Switching database back to WAL mode", "path", path)
-
-	_, err = conn.ExecContext(ctx, "PRAGMA journal_mode=WAL")
-	if err != nil {
-		log.Warn("Failed to switch back to WAL mode", "path", path, "error", err)
-	}
-
 	db, err := finishOpen(ctx, conn, path)
 	if err != nil {
 		return nil, err

internal/database/database_test.go

@@ -120,6 +120,89 @@ func TestDatabaseConcurrentAccess(t *testing.T) {
 	}
 }
 
+// TestNewSetsJournalModeAndBusyTimeout checks that the connection settings
+// New passes reach SQLite. The driver drops a setting it does not recognise
+// without an error, so only reading the value back shows it took effect.
+func TestNewSetsJournalModeAndBusyTimeout(t *testing.T) {
+	t.Parallel()
+
+	ctx := context.Background()
+
+	db, err := New(ctx, filepath.Join(t.TempDir(), "index.db"))
+	if err != nil {
+		t.Fatalf("failed to create database: %v", err)
+	}
+
+	defer func() { _ = db.Close() }()
+
+	var journalMode string
+
+	err = db.conn.QueryRowContext(ctx, "PRAGMA journal_mode").Scan(&journalMode)
+	if err != nil {
+		t.Fatalf("reading journal_mode: %v", err)
+	}
+
+	if journalMode != "wal" {
+		t.Errorf("journal_mode = %q, want %q", journalMode, "wal")
+	}
+
+	var busyTimeout int
+
+	err = db.conn.QueryRowContext(ctx, "PRAGMA busy_timeout").Scan(&busyTimeout)
+	if err != nil {
+		t.Fatalf("reading busy_timeout: %v", err)
+	}
+
+	if busyTimeout != busyTimeoutMs {
+		t.Errorf("busy_timeout = %d, want %d", busyTimeout, busyTimeoutMs)
+	}
+}
+
+// TestNewWriteSucceedsWhileAnotherHandleReads opens the same index twice,
+// as a read-only command does while a backup runs, and checks that a write
+// on one handle commits while the other is in the middle of a read.
+func TestNewWriteSucceedsWhileAnotherHandleReads(t *testing.T) {
+	t.Parallel()
+
+	ctx := context.Background()
+	dbPath := filepath.Join(t.TempDir(), "index.db")
+
+	reader, err := New(ctx, dbPath)
+	if err != nil {
+		t.Fatalf("failed to open reading handle: %v", err)
+	}
+
+	defer func() { _ = reader.Close() }()
+
+	writer, err := New(ctx, dbPath)
+	if err != nil {
+		t.Fatalf("failed to open writing handle: %v", err)
+	}
+
+	defer func() { _ = writer.Close() }()
+
+	// The read lock taken by the SELECT is held until the transaction ends.
+	readTx, err := reader.BeginTx(ctx, nil)
+	if err != nil {
+		t.Fatalf("beginning read transaction: %v", err)
+	}
+
+	defer func() { _ = readTx.Rollback() }()
+
+	var count int
+
+	err = readTx.QueryRowContext(ctx, "SELECT COUNT(*) FROM chunks").Scan(&count)
+	if err != nil {
+		t.Fatalf("reading chunks: %v", err)
+	}
+
+	_, err = writer.ExecWithLog(ctx,
+		"INSERT INTO chunks (chunk_hash, size) VALUES (?, ?)", "hash", 1024)
+	if err != nil {
+		t.Fatalf("write while another handle reads: %v", err)
+	}
+}
+
 func TestParseMigrationVersion(t *testing.T) {
 	t.Parallel()
 

internal/database/file_chunks.go

@@ -253,7 +253,7 @@ func (r *FileChunkRepository) CreateBatch(
 			args = append(args, fc.FileID.String(), fc.Idx, fc.ChunkHash.String())
 		}
 
-		query += querySb211.String() //nolint:gosec // G202: appends "?" placeholders only
+		query += querySb211.String()
 
 		query += " ON CONFLICT(file_id, idx) DO NOTHING"
 

internal/database/files.go

@@ -33,11 +33,13 @@ func (r *FileRepository) Create(ctx context.Context, tx *sql.Tx, file *File) err
 	}
 
 	query := `
-		INSERT INTO files (id, path, source_path, mtime, size, mode, uid, gid, link_target)
-		VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
+		INSERT INTO files
+			(id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target)
+		VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
 		ON CONFLICT(path) DO UPDATE SET
 			source_path = excluded.source_path,
 			mtime = excluded.mtime,
+			mtime_nsec = excluded.mtime_nsec,
 			size = excluded.size,
 			mode = excluded.mode,
 			uid = excluded.uid,
@@ -54,16 +56,19 @@ func (r *FileRepository) Create(ctx context.Context, tx *sql.Tx, file *File) err
 	if tx != nil {
 		LogSQL("Execute", query,
 			file.ID.String(), file.Path.String(), file.SourcePath.String(),
-			file.MTime.Unix(), file.Size, file.Mode, file.UID, file.GID,
+			file.MTime.Unix(), file.MTime.Nanosecond(),
+			file.Size, file.Mode, file.UID, file.GID,
 			file.LinkTarget.String())
 		err = tx.QueryRowContext(ctx, query,
 			file.ID.String(), file.Path.String(), file.SourcePath.String(),
-			file.MTime.Unix(), file.Size, file.Mode, file.UID, file.GID,
+			file.MTime.Unix(), file.MTime.Nanosecond(),
+			file.Size, file.Mode, file.UID, file.GID,
 			file.LinkTarget.String()).Scan(&idStr)
 	} else {
 		err = r.db.QueryRowWithLog(ctx, query,
 			file.ID.String(), file.Path.String(), file.SourcePath.String(),
-			file.MTime.Unix(), file.Size, file.Mode, file.UID, file.GID,
+			file.MTime.Unix(), file.MTime.Nanosecond(),
+			file.Size, file.Mode, file.UID, file.GID,
 			file.LinkTarget.String()).Scan(&idStr)
 	}
 
@@ -84,7 +89,7 @@ func (r *FileRepository) Create(ctx context.Context, tx *sql.Tx, file *File) err
 // in the index.
 func (r *FileRepository) GetByPath(ctx context.Context, path string) (*File, error) {
 	query := `
-		SELECT id, path, source_path, mtime, size, mode, uid, gid, link_target
+		SELECT id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target
 		FROM files
 		WHERE path = ?
 	`
@@ -104,7 +109,7 @@ func (r *FileRepository) GetByPath(ctx context.Context, path string) (*File, err
 // GetByID retrieves a file by its UUID
 func (r *FileRepository) GetByID(ctx context.Context, id types.FileID) (*File, error) {
 	query := `
-		SELECT id, path, source_path, mtime, size, mode, uid, gid, link_target
+		SELECT id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target
 		FROM files
 		WHERE id = ?
 	`
@@ -127,7 +132,7 @@ func (r *FileRepository) GetByPathTx(
 	ctx context.Context, tx *sql.Tx, path string,
 ) (*File, error) {
 	query := `
-		SELECT id, path, source_path, mtime, size, mode, uid, gid, link_target
+		SELECT id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target
 		FROM files
 		WHERE path = ?
 	`
@@ -158,13 +163,14 @@ func (r *FileRepository) ListModifiedSince(
 	ctx context.Context, since time.Time,
 ) ([]*File, error) {
 	query := `
-		SELECT id, path, source_path, mtime, size, mode, uid, gid, link_target
+		SELECT id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target
 		FROM files
-		WHERE mtime >= ?
+		WHERE (mtime, mtime_nsec) >= (?, ?)
 		ORDER BY path
 	`
 
-	rows, err := r.db.conn.QueryContext(ctx, query, since.Unix())
+	rows, err := r.db.conn.QueryContext(ctx, query,
+		since.Unix(), since.Nanosecond())
 	if err != nil {
 		return nil, fmt.Errorf("querying files: %w", err)
 	}
@@ -228,19 +234,24 @@ func (r *FileRepository) DeleteByID(
 	return nil
 }
 
-// ListByPrefix returns all files whose path starts with prefix, ordered by
-// path.
-func (r *FileRepository) ListByPrefix(
-	ctx context.Context, prefix string,
+// ListUnderPath returns the file at path and every file beneath it,
+// ordered by path. Paths are compared case-sensitively, and a trailing
+// slash on path is ignored, so "/" lists every file.
+func (r *FileRepository) ListUnderPath(
+	ctx context.Context, path string,
 ) ([]*File, error) {
+	path = strings.TrimRight(path, "/")
+	dirPrefix := path + "/"
+
+	// LIKE would ignore ASCII case and treat _ and % in path as wildcards.
 	query := `
-		SELECT id, path, source_path, mtime, size, mode, uid, gid, link_target
+		SELECT id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target
 		FROM files
-		WHERE path LIKE ? || '%'
+		WHERE path = ? OR substr(path, 1, length(?)) = ?
 		ORDER BY path
 	`
 
-	rows, err := r.db.conn.QueryContext(ctx, query, prefix)
+	rows, err := r.db.conn.QueryContext(ctx, query, path, dirPrefix, dirPrefix)
 	if err != nil {
 		return nil, fmt.Errorf("querying files: %w", err)
 	}
@@ -319,7 +330,7 @@ func (r *FileRepository) ListIDsWithChunksNotInUploadedBlobs(
 // ListAll returns all files in the database
 func (r *FileRepository) ListAll(ctx context.Context) ([]*File, error) {
 	query := `
-		SELECT id, path, source_path, mtime, size, mode, uid, gid, link_target
+		SELECT id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target
 		FROM files
 		ORDER BY path
 	`
@@ -360,7 +371,7 @@ func (r *FileRepository) CreateBatch(
 	}
 
 	// Each files row binds this many SQL variables.
-	const fileCols = 9
+	const fileCols = 10
 
 	// Batch at 100 rows to be safe with SQLite's variable limit.
 	const batchSize = 100
@@ -371,7 +382,7 @@ func (r *FileRepository) CreateBatch(
 		batch := files[i:end]
 
 		query := `INSERT INTO files
-			(id, path, source_path, mtime, size, mode, uid, gid, link_target)
+			(id, path, source_path, mtime, mtime_nsec, size, mode, uid, gid, link_target)
 			VALUES `
 
 		args := make([]any, 0, len(batch)*fileCols)
@@ -383,19 +394,21 @@ func (r *FileRepository) CreateBatch(
 				querySb325.WriteString(", ")
 			}
 
-			querySb325.WriteString("(?, ?, ?, ?, ?, ?, ?, ?, ?)")
+			querySb325.WriteString("(?, ?, ?, ?, ?, ?, ?, ?, ?, ?)")
 
 			args = append(args,
 				f.ID.String(), f.Path.String(), f.SourcePath.String(),
-				f.MTime.Unix(), f.Size, f.Mode, f.UID, f.GID,
+				f.MTime.Unix(), f.MTime.Nanosecond(),
+				f.Size, f.Mode, f.UID, f.GID,
 				f.LinkTarget.String())
 		}
 
-		query += querySb325.String() //nolint:gosec // G202: appends "?" placeholders only
+		query += querySb325.String()
 
 		query += ` ON CONFLICT(path) DO UPDATE SET
 			source_path = excluded.source_path,
 			mtime = excluded.mtime,
+			mtime_nsec = excluded.mtime_nsec,
 			size = excluded.size,
 			mode = excluded.mode,
 			uid = excluded.uid,
@@ -455,7 +468,7 @@ func (r *FileRepository) scanFileFrom(row fileRowScanner) (*File, error) {
 	var (
 		file                          File
 		idStr, pathStr, sourcePathStr string
-		mtimeUnix                     int64
+		mtimeUnix, mtimeNsec          int64
 		linkTarget                    sql.NullString
 	)
 
@@ -464,6 +477,7 @@ func (r *FileRepository) scanFileFrom(row fileRowScanner) (*File, error) {
 		&pathStr,
 		&sourcePathStr,
 		&mtimeUnix,
+		&mtimeNsec,
 		&file.Size,
 		&file.Mode,
 		&file.UID,
@@ -482,7 +496,7 @@ func (r *FileRepository) scanFileFrom(row fileRowScanner) (*File, error) {
 	file.Path = types.FilePath(pathStr)
 	file.SourcePath = types.SourcePath(sourcePathStr)
 
-	file.MTime = time.Unix(mtimeUnix, 0).UTC()
+	file.MTime = time.Unix(mtimeUnix, mtimeNsec).UTC()
 	if linkTarget.Valid {
 		file.LinkTarget = types.FilePath(linkTarget.String)
 	}

internal/database/files_test.go

@@ -5,10 +5,12 @@ import (
 	"database/sql"
 	"errors"
 	"os"
+	"slices"
 	"testing"
 	"time"
 
 	"sneak.berlin/go/vaultik/internal/database"
+	"sneak.berlin/go/vaultik/internal/types"
 )
 
 // errTestRollback is the sentinel returned from transaction bodies to
@@ -134,6 +136,82 @@ func TestFileRepositoryListDelete(t *testing.T) {
 	}
 }
 
+func TestFileRepositoryListUnderPath(t *testing.T) {
+	t.Parallel()
+
+	db, cleanup := setupTestDB(t)
+	defer cleanup()
+
+	ctx := context.Background()
+	repo := database.NewFileRepository(db)
+
+	const (
+		docDir  = "/home/u/doc"
+		docFile = "/home/u/doc/a.txt"
+	)
+
+	// In path order, so the root case can expect all of them as listed.
+	paths := []string{
+		"/home/u/50%/x.txt",
+		"/home/u/50percent/y.txt",
+		"/home/u/DOC/c.txt",
+		"/home/u/a_b/x.txt",
+		"/home/u/axb/y.txt",
+		docDir,
+		"/home/u/doc.txt.bak",
+		docFile,
+		"/home/u/doc/sub/b.txt",
+		"/home/u/doc2/b.txt",
+	}
+
+	for _, path := range paths {
+		err := repo.Create(ctx, nil, &database.File{
+			Path:  types.FilePath(path),
+			MTime: time.Now().Truncate(time.Second),
+			Mode:  0644,
+		})
+		if err != nil {
+			t.Fatalf("failed to create %s: %v", path, err)
+		}
+	}
+
+	docTree := []string{docDir, docFile, "/home/u/doc/sub/b.txt"}
+
+	tests := []struct {
+		name string
+		path string
+		want []string
+	}{
+		{"directory", docDir, docTree},
+		{"directory with trailing slash", docDir + "/", docTree},
+		{"directory differing only in case", "/home/u/DOC",
+			[]string{"/home/u/DOC/c.txt"}},
+		{"file", docFile, []string{docFile}},
+		{"underscore is literal", "/home/u/a_b",
+			[]string{"/home/u/a_b/x.txt"}},
+		{"percent is literal", "/home/u/50%",
+			[]string{"/home/u/50%/x.txt"}},
+		{"root", "/", paths},
+	}
+
+	for _, tt := range tests {
+		files, err := repo.ListUnderPath(ctx, tt.path)
+		if err != nil {
+			t.Fatalf("%s: failed to list files: %v", tt.name, err)
+		}
+
+		got := make([]string, 0, len(files))
+		for _, f := range files {
+			got = append(got, f.Path.String())
+		}
+
+		if !slices.Equal(got, tt.want) {
+			t.Errorf("%s: listing %q got %q, want %q",
+				tt.name, tt.path, got, tt.want)
+		}
+	}
+}
+
 func TestFileRepositorySymlink(t *testing.T) {
 	t.Parallel()
 
@@ -174,6 +252,115 @@ func TestFileRepositorySymlink(t *testing.T) {
 	}
 }
 
+// An mtime after 2262 or before 1678 does not fit in int64 nanoseconds
+// since the epoch, and must still come back from the database unchanged.
+func TestFileRepositoryMTimeOutsideInt64NanosecondRange(t *testing.T) {
+	t.Parallel()
+
+	db, cleanup := setupTestDB(t)
+	defer cleanup()
+
+	ctx := context.Background()
+	repo := database.NewFileRepository(db)
+
+	mtimes := []time.Time{
+		time.Date(2300, time.January, 1, 0, 0, 0, 123456789, time.UTC),
+		time.Date(1601, time.January, 1, 0, 0, 0, 987654321, time.UTC),
+	}
+
+	for _, mtime := range mtimes {
+		created := &database.File{
+			Path:  types.FilePath("/created-" + mtime.Format(time.RFC3339Nano)),
+			MTime: mtime,
+		}
+
+		err := repo.Create(ctx, nil, created)
+		if err != nil {
+			t.Fatalf("failed to create file: %v", err)
+		}
+
+		batched := &database.File{
+			ID:    types.NewFileID(),
+			Path:  types.FilePath("/batched-" + mtime.Format(time.RFC3339Nano)),
+			MTime: mtime,
+		}
+
+		err = repo.CreateBatch(ctx, nil, []*database.File{batched})
+		if err != nil {
+			t.Fatalf("failed to batch create file: %v", err)
+		}
+
+		for _, path := range []types.FilePath{created.Path, batched.Path} {
+			retrieved, err := repo.GetByPath(ctx, path.String())
+			if err != nil {
+				t.Fatalf("failed to get file: %v", err)
+			}
+
+			if !retrieved.MTime.Equal(mtime) {
+				t.Errorf("%s: mtime got %v, want %v",
+					path, retrieved.MTime, mtime)
+			}
+		}
+	}
+}
+
+// A file already in the index and rewritten within the same second must get
+// its new nanoseconds stored, through both Create and CreateBatch.
+func TestFileRepositoryUpsertMTimeInSameSecond(t *testing.T) {
+	t.Parallel()
+
+	db, cleanup := setupTestDB(t)
+	defer cleanup()
+
+	ctx := context.Background()
+	repo := database.NewFileRepository(db)
+
+	indexed := time.Date(2026, time.October, 7, 12, 0, 0, 100000000, time.UTC)
+	rewritten := indexed.Add(800 * time.Millisecond)
+
+	tests := []struct {
+		name   string
+		upsert func(file *database.File) error
+	}{
+		{"Create", func(file *database.File) error {
+			return repo.Create(ctx, nil, file)
+		}},
+		{"CreateBatch", func(file *database.File) error {
+			return repo.CreateBatch(ctx, nil, []*database.File{file})
+		}},
+	}
+
+	for _, tt := range tests {
+		file := &database.File{
+			ID:    types.NewFileID(),
+			Path:  types.FilePath("/" + tt.name),
+			MTime: indexed,
+		}
+
+		err := tt.upsert(file)
+		if err != nil {
+			t.Fatalf("%s: failed to create file: %v", tt.name, err)
+		}
+
+		file.MTime = rewritten
+
+		err = tt.upsert(file)
+		if err != nil {
+			t.Fatalf("%s: failed to update file: %v", tt.name, err)
+		}
+
+		retrieved, err := repo.GetByPath(ctx, file.Path.String())
+		if err != nil {
+			t.Fatalf("%s: failed to get file: %v", tt.name, err)
+		}
+
+		if !retrieved.MTime.Equal(rewritten) {
+			t.Errorf("%s: mtime got %v, want %v",
+				tt.name, retrieved.MTime, rewritten)
+		}
+	}
+}
+
 func TestFileRepositoryTransaction(t *testing.T) {
 	t.Parallel()
 

internal/database/models.go

@@ -14,8 +14,7 @@ type File struct {
 	ID   types.FileID   // UUID primary key
 	Path types.FilePath // Absolute path of the file
 
-	// SourcePath is the source directory this file came from (used for
-	// restore path stripping).
+	// SourcePath is the source directory this file came from.
 	SourcePath types.SourcePath
 	MTime      time.Time
 	Size       int64
@@ -99,8 +98,8 @@ type Snapshot struct {
 	StartedAt          time.Time
 	CompletedAt        *time.Time // nil if still in progress
 	FileCount          int64
-	ChunkCount         int64
-	BlobCount          int64
+	ChunkCount         int64 // Chunks this snapshot stored that were not stored before
+	BlobCount          int64 // Blobs this snapshot created
 	TotalSize          int64 // Total size of all referenced files
 
 	// BlobSize is the total size of all referenced blobs (compressed and

internal/database/repository_comprehensive_test.go

@@ -824,7 +824,7 @@ func TestTransactionIsolation(t *testing.T) {
 	}
 
 	// Verify the file was not created (transaction rolled back)
-	files, err := repos.Files.ListByPrefix(ctx, "/tx-test")
+	files, err := repos.Files.ListUnderPath(ctx, "/tx-test.txt")
 	if err != nil {
 		t.Fatal(err)
 	}
@@ -916,7 +916,7 @@ func TestConcurrentOrphanedCleanup(t *testing.T) {
 	}
 
 	// Verify correct files were deleted
-	files, err := repos.Files.ListByPrefix(ctx, "/concurrent-")
+	files, err := repos.Files.ListAll(ctx)
 	if err != nil {
 		t.Fatal(err)
 	}

internal/database/repository_debug_test.go

@@ -147,7 +147,7 @@ func TestOrphanedFileCleanupDebug(t *testing.T) {
 	t.Logf("Files count after cleanup: %d", count)
 
 	// List remaining files
-	files, err := repos.Files.ListByPrefix(ctx, "/")
+	files, err := repos.Files.ListUnderPath(ctx, "/")
 	if err != nil {
 		t.Fatal(err)
 	}

internal/database/repository_edge_cases_test.go

@@ -3,6 +3,7 @@ package database
 
 import (
 	"context"
+	"database/sql"
 	"fmt"
 	"strings"
 	"testing"
@@ -367,7 +368,7 @@ func verifyBlobNullUploadTS(
 }
 
 // createLargeDatasetFiles creates fileCount files and adds every other
-// one to the snapshot.
+// one to the snapshot, in one transaction as a backup writes them.
 func createLargeDatasetFiles(
 	t *testing.T,
 	repos *Repositories,
@@ -376,31 +377,38 @@ func createLargeDatasetFiles(
 ) {
 	t.Helper()
 
-	ctx := context.Background()
 	start := time.Now()
 
-	for i := range fileCount {
-		file := &File{
-			Path:  types.FilePath(fmt.Sprintf("/large/file%05d.txt", i)),
-			MTime: time.Now(),
-			Size:  int64(i * 1024),
-			Mode:  0644,
-			UID:   uint32(1000 + (i % 10)),
-			GID:   uint32(1000 + (i % 10)),
-		}
+	err := repos.WithTx(context.Background(),
+		func(ctx context.Context, tx *sql.Tx) error {
+			for i := range fileCount {
+				file := &File{
+					Path:  types.FilePath(fmt.Sprintf("/large/file%05d.txt", i)),
+					MTime: time.Now(),
+					Size:  int64(i * 1024),
+					Mode:  0644,
+					UID:   uint32(1000 + (i % 10)),
+					GID:   uint32(1000 + (i % 10)),
+				}
 
-		err := repos.Files.Create(ctx, nil, file)
-		if err != nil {
-			t.Fatalf("failed to create file %d: %v", i, err)
-		}
+				err := repos.Files.Create(ctx, tx, file)
+				if err != nil {
+					return fmt.Errorf("creating file %d: %w", i, err)
+				}
 
-		// Add half to snapshot
-		if i%2 == 0 {
-			err = repos.Snapshots.AddFileByID(ctx, nil, snapshotID, file.ID)
-			if err != nil {
-				t.Fatal(err)
+				// Add half to snapshot
+				if i%2 == 0 {
+					err = repos.Snapshots.AddFileByID(ctx, tx, snapshotID, file.ID)
+					if err != nil {
+						return err
+					}
+				}
 			}
-		}
+
+			return nil
+		})
+	if err != nil {
+		t.Fatal(err)
 	}
 
 	t.Logf("Created %d files in %v", fileCount, time.Since(start))
@@ -442,12 +450,12 @@ func TestLargeDatasets(t *testing.T) {
 		createLargeDatasetFiles(t, repos, snapshot.ID.String(), fileCount)
 	})
 
-	// Test ListByPrefix performance
+	// Test ListUnderPath performance
 	//nolint:paralleltest // phases share one database and are order-dependent
-	t.Run("list by prefix performance", func(t *testing.T) {
+	t.Run("list under path performance", func(t *testing.T) {
 		start := time.Now()
 
-		files, err := repos.Files.ListByPrefix(ctx, "/large/")
+		files, err := repos.Files.ListUnderPath(ctx, "/large/")
 		if err != nil {
 			t.Fatal(err)
 		}
@@ -472,7 +480,7 @@ func TestLargeDatasets(t *testing.T) {
 		t.Logf("Cleaned up orphaned files in %v", time.Since(start))
 
 		// Verify correct number remain
-		files, err := repos.Files.ListByPrefix(ctx, "/large/")
+		files, err := repos.Files.ListUnderPath(ctx, "/large/")
 		if err != nil {
 			t.Fatal(err)
 		}
@@ -606,8 +614,7 @@ func TestTimezoneHandling(t *testing.T) {
 		t.Skip("timezone not available")
 	}
 
-	// Use Truncate to remove sub-second precision since we store as Unix timestamps
-	nyTime := time.Now().In(loc).Truncate(time.Second)
+	nyTime := time.Now().In(loc)
 	file := &File{
 		Path:  "/timezone-test.txt",
 		MTime: nyTime,

internal/database/schema/001.sql

@@ -5,8 +5,9 @@
 CREATE TABLE IF NOT EXISTS files (
     id TEXT PRIMARY KEY,  -- UUID
     path TEXT NOT NULL UNIQUE,
-    source_path TEXT NOT NULL DEFAULT '',  -- The source directory this file came from (for restore path stripping)
-    mtime INTEGER NOT NULL,
+    source_path TEXT NOT NULL DEFAULT '',  -- The source directory this file came from
+    mtime INTEGER NOT NULL,  -- whole seconds since the Unix epoch
+    mtime_nsec INTEGER NOT NULL,  -- nanoseconds within that second, 0 to 999999999
     size INTEGER NOT NULL,
     mode INTEGER NOT NULL,
     uid INTEGER NOT NULL,

internal/database/snapshots.go

@@ -127,6 +127,7 @@ func (r *SnapshotRepository) UpdateExtendedStats(
 	snapshotID string,
 	blobUncompressedSize int64,
 	compressionLevel int,
+	uploadBytes int64,
 	uploadDurationMs int64,
 ) error {
 	compressionRatio, err := r.extendedCompressionRatio(
@@ -141,7 +142,7 @@ func (r *SnapshotRepository) UpdateExtendedStats(
 		SET blob_uncompressed_size = ?,
 		    compression_ratio = ?,
 		    compression_level = ?,
-		    upload_bytes = blob_size,
+		    upload_bytes = ?,
 		    upload_duration_ms = ?
 		WHERE id = ?
 	`
@@ -149,11 +150,11 @@ func (r *SnapshotRepository) UpdateExtendedStats(
 	if tx != nil {
 		_, err = tx.ExecContext(ctx, query,
 			blobUncompressedSize, compressionRatio, compressionLevel,
-			uploadDurationMs, snapshotID)
+			uploadBytes, uploadDurationMs, snapshotID)
 	} else {
 		_, err = r.db.ExecWithLog(ctx, query,
 			blobUncompressedSize, compressionRatio, compressionLevel,
-			uploadDurationMs, snapshotID)
+			uploadBytes, uploadDurationMs, snapshotID)
 	}
 
 	if err != nil {
@@ -395,7 +396,7 @@ func (r *SnapshotRepository) AddFilesByIDBatch(
 			args = append(args, snapshotID, fileID.String())
 		}
 
-		query += querySb312.String() //nolint:gosec // G202: appends "?" placeholders only
+		query += querySb312.String()
 
 		var err error
 		if tx != nil {
@@ -543,6 +544,30 @@ func (r *SnapshotRepository) GetSnapshotTotalCompressedSize(
 	return totalSize, nil
 }
 
+// GetSnapshotBlobSizes returns the total compressed and uncompressed sizes
+// of all blobs referenced by a snapshot.
+func (r *SnapshotRepository) GetSnapshotBlobSizes(
+	ctx context.Context, snapshotID string,
+) (int64, int64, error) {
+	query := `
+		SELECT COALESCE(SUM(b.compressed_size), 0),
+			COALESCE(SUM(b.uncompressed_size), 0)
+		FROM snapshot_blobs sb
+		JOIN blobs b ON sb.blob_hash = b.blob_hash
+		WHERE sb.snapshot_id = ?
+	`
+
+	var compressed, uncompressed int64
+
+	err := r.db.conn.QueryRowContext(ctx, query, snapshotID).Scan(
+		&compressed, &uncompressed)
+	if err != nil {
+		return 0, 0, fmt.Errorf("querying snapshot blob sizes: %w", err)
+	}
+
+	return compressed, uncompressed, nil
+}
+
 // GetSnapshotUncompressedChunkSize returns the sum of plaintext sizes of all unique
 // chunks referenced by a snapshot (via snapshot_files → file_chunks → chunks).
 func (r *SnapshotRepository) GetSnapshotUncompressedChunkSize(

internal/database/snapshots_test.go

@@ -145,6 +145,65 @@ func TestSnapshotRepositoryUpdateCounts(t *testing.T) {
 	}
 }
 
+// GetSnapshotBlobSizes totals the blobs the snapshot references, and only
+// those.
+func TestSnapshotRepositoryGetSnapshotBlobSizes(t *testing.T) {
+	t.Parallel()
+
+	db, cleanup := setupTestDB(t)
+	defer cleanup()
+
+	ctx := context.Background()
+	repos := database.NewRepositories(db)
+
+	snapshot := &database.Snapshot{
+		ID:             "2024-01-03T12:00:00Z",
+		Hostname:       testHostname,
+		VaultikVersion: testVersion,
+		StartedAt:      time.Now().Truncate(time.Second),
+	}
+
+	err := repos.Snapshots.Create(ctx, nil, snapshot)
+	if err != nil {
+		t.Fatalf("failed to create snapshot: %v", err)
+	}
+
+	blobs := []*database.Blob{
+		{Hash: "referenced-1", CompressedSize: 10, UncompressedSize: 100},
+		{Hash: "referenced-2", CompressedSize: 20, UncompressedSize: 200},
+		{Hash: "unreferenced", CompressedSize: 40, UncompressedSize: 400},
+	}
+
+	for _, blob := range blobs {
+		blob.ID = types.NewBlobID()
+		blob.CreatedTS = time.Now().Truncate(time.Second)
+
+		err = repos.Blobs.Create(ctx, nil, blob)
+		if err != nil {
+			t.Fatalf("failed to create blob %s: %v", blob.Hash, err)
+		}
+	}
+
+	for _, blob := range blobs[:2] {
+		err = repos.Snapshots.AddBlob(ctx, nil, snapshot.ID.String(),
+			blob.ID, blob.Hash)
+		if err != nil {
+			t.Fatalf("failed to add blob %s to snapshot: %v", blob.Hash, err)
+		}
+	}
+
+	compressed, uncompressed, err := repos.Snapshots.GetSnapshotBlobSizes(
+		ctx, snapshot.ID.String())
+	if err != nil {
+		t.Fatalf("failed to get snapshot blob sizes: %v", err)
+	}
+
+	if compressed != 30 || uncompressed != 300 {
+		t.Errorf("blob sizes: got %d and %d, want 30 and 300",
+			compressed, uncompressed)
+	}
+}
+
 func TestSnapshotRepositoryListRecent(t *testing.T) {
 	t.Parallel()
 

internal/database/uploads.go

@@ -158,19 +158,3 @@ type UploadStats struct {
 	MinDurationMs int64
 	MaxDurationMs int64
 }
-
-// GetCountBySnapshot returns the count of uploads for a specific snapshot
-func (r *UploadRepository) GetCountBySnapshot(
-	ctx context.Context, snapshotID string,
-) (int64, error) {
-	query := `SELECT COUNT(*) FROM uploads WHERE snapshot_id = ?`
-
-	var count int64
-
-	err := r.conn.QueryRowContext(ctx, query, snapshotID).Scan(&count)
-	if err != nil {
-		return 0, err
-	}
-
-	return count, nil
-}

internal/globals/globals.go

@@ -18,14 +18,19 @@ var Appname = "vaultik" //nolint:gochecknoglobals // set via -ldflags at build t
 // deliberately not a number.
 const DevVersion = "dev"
 
+// Unknown is what Commit and CommitDate hold when the build did not
+// stamp them, and the version script/docker and script/cibuild stamp
+// when the host has no git checkout.
+const Unknown = "unknown"
+
 // Version is the application version, populated from main().
 var Version = DevVersion //nolint:gochecknoglobals // set via -ldflags at build time
 
 // Commit is the git commit hash, populated from main().
-var Commit = "unknown" //nolint:gochecknoglobals // set via -ldflags at build time
+var Commit = Unknown //nolint:gochecknoglobals // set via -ldflags at build time
 
 // CommitDate is the ISO-8601 date of the commit, populated from main().
-var CommitDate = "unknown" //nolint:gochecknoglobals // set via -ldflags at build time
+var CommitDate = Unknown //nolint:gochecknoglobals // set via -ldflags at build time
 
 // Author identifies the upstream author of vaultik.
 const Author = "Jeffrey Paul <sneak@sneak.berlin>"
@@ -72,9 +77,11 @@ func New() (*Globals, error) {
 // safe reading of "we could not establish that this is a release" is
 // that it is not one. The Makefile refuses to build at all in that
 // case; this is the second line of defence, for a binary linked by
-// something other than the Makefile.
+// something other than the Makefile. Unknown counts for the same
+// reason.
 func IsDevVersion(v string) bool {
-	if v == "" || v == DevVersion || strings.HasPrefix(v, DevVersion+"-") ||
+	if v == "" || v == Unknown || v == DevVersion ||
+		strings.HasPrefix(v, DevVersion+"-") ||
 		strings.HasSuffix(v, "-dirty") {
 		return true
 	}

internal/globals/globals_test.go

@@ -74,6 +74,9 @@ func TestIsDevVersion(t *testing.T) {
 		// as one. The Makefile refuses to build when script/version
 		// yields nothing; this covers a binary linked some other way.
 		{"", true},
+		// What script/docker and script/cibuild stamp when the host
+		// has no git checkout.
+		{"unknown", true},
 	}
 
 	for _, tc := range cases {

internal/pidlock/pidlock.go

@@ -10,15 +10,18 @@ import (
 	"path/filepath"
 	"strconv"
 	"strings"
-	"syscall"
+
+	"golang.org/x/sys/unix"
 )
 
 // ErrAlreadyRunning indicates another vaultik instance is running.
 var ErrAlreadyRunning = errors.New("another vaultik instance is already running")
 
-// Lock represents an acquired PID lock.
+// Lock represents an acquired PID lock: an flock(2) on the PID file,
+// held while the file stays open. The kernel drops it when the process
+// exits, however it exits, so a crashed run never leaves the lock held.
 type Lock struct {
-	path string
+	file *os.File
 }
 
 const (
@@ -29,10 +32,9 @@ const (
 )
 
 // Acquire attempts to acquire a PID lock in the specified directory.
-// If the lock file exists and the process is still running, it returns
-// ErrAlreadyRunning with details about the existing process.
-// On success, it writes the current PID to the lock file and returns
-// a Lock that must be released with Release().
+// If another process holds the lock, it returns ErrAlreadyRunning with
+// that process's PID. On success, it writes the current PID to the lock
+// file and returns a Lock that must be released with Release().
 func Acquire(lockDir string) (*Lock, error) {
 	// Ensure lock directory exists
 	err := os.MkdirAll(lockDir, lockDirPerm)
@@ -42,56 +44,82 @@ func Acquire(lockDir string) (*Lock, error) {
 
 	lockPath := filepath.Join(lockDir, "vaultik.pid")
 
-	// Check for existing lock
-	existingPID, err := readPIDFile(lockPath)
-	if err == nil {
-		// Lock file exists, check if process is running
-		if isProcessRunning(existingPID) {
-			return nil, fmt.Errorf("%w (PID %d)", ErrAlreadyRunning, existingPID)
-		}
-		// Process is not running, stale lock file - we can take over
-	}
-
-	// Write our PID
-	pid := os.Getpid()
-
-	err = os.WriteFile(lockPath, []byte(strconv.Itoa(pid)), pidFilePerm)
+	// No O_TRUNC: the file may hold the PID of the process that has the
+	// lock, which the error below reports.
+	file, err := os.OpenFile( //nolint:gosec // G304: path is our own lock file
+		lockPath, os.O_RDWR|os.O_CREATE, pidFilePerm)
 	if err != nil {
-		return nil, fmt.Errorf("writing PID file: %w", err)
+		return nil, fmt.Errorf("opening PID file: %w", err)
 	}
 
-	return &Lock{path: lockPath}, nil
+	err = unix.Flock(int(file.Fd()), unix.LOCK_EX|unix.LOCK_NB)
+	if err != nil {
+		_ = file.Close()
+
+		if errors.Is(err, unix.EWOULDBLOCK) {
+			return nil, alreadyRunningError(lockPath)
+		}
+
+		return nil, fmt.Errorf("locking PID file: %w", err)
+	}
+
+	err = writePID(file)
+	if err != nil {
+		_ = file.Close()
+
+		return nil, err
+	}
+
+	return &Lock{file: file}, nil
 }
 
-// Release removes the PID lock file.
+// Release empties the PID file and closes it, which drops the lock.
 // It is safe to call Release multiple times.
 func (l *Lock) Release() error {
-	if l == nil || l.path == "" {
+	if l == nil || l.file == nil {
 		return nil
 	}
 
-	// Verify we still own the lock (our PID is in the file)
-	existingPID, err := readPIDFile(l.path)
+	file := l.file
+	l.file = nil
+
+	// Do not remove the file here. A process that opened it a moment
+	// earlier could then lock the removed file while another creates and
+	// locks a new one, and both would run.
+	truncateErr := file.Truncate(0)
+	closeErr := file.Close()
+
+	return errors.Join(truncateErr, closeErr)
+}
+
+// writePID replaces the contents of the locked PID file with the current
+// PID.
+func writePID(file *os.File) error {
+	err := file.Truncate(0)
 	if err != nil {
-		// File already gone or unreadable - that's fine
-		return nil //nolint:nilerr // unreadable lock file means nothing to release
+		return fmt.Errorf("truncating PID file: %w", err)
 	}
 
-	if existingPID != os.Getpid() {
-		// Someone else wrote to our lock file - don't remove it
-		return nil
+	_, err = file.WriteAt([]byte(strconv.Itoa(os.Getpid())), 0)
+	if err != nil {
+		return fmt.Errorf("writing PID file: %w", err)
 	}
 
-	err = os.Remove(l.path)
-	if err != nil && !os.IsNotExist(err) {
-		return fmt.Errorf("removing PID file: %w", err)
-	}
-
-	l.path = "" // Prevent double-release
-
 	return nil
 }
 
+// alreadyRunningError reports that another process holds the lock,
+// naming its PID when the file holds one. The holder writes its PID just
+// after it locks, so the file can briefly be empty.
+func alreadyRunningError(lockPath string) error {
+	pid, err := readPIDFile(lockPath)
+	if err != nil {
+		return ErrAlreadyRunning
+	}
+
+	return fmt.Errorf("%w (PID %d)", ErrAlreadyRunning, pid)
+}
+
 // readPIDFile reads and parses the PID from a lock file.
 func readPIDFile(path string) (int, error) {
 	data, err := os.ReadFile(path) //nolint:gosec // G304: path is our own lock file
@@ -106,16 +134,3 @@ func readPIDFile(path string) (int, error) {
 
 	return pid, nil
 }
-
-// isProcessRunning checks if a process with the given PID is running.
-func isProcessRunning(pid int) bool {
-	process, err := os.FindProcess(pid)
-	if err != nil {
-		return false
-	}
-
-	// On Unix, FindProcess always succeeds. We need to send signal 0 to check.
-	err = process.Signal(syscall.Signal(0))
-
-	return err == nil
-}

internal/pidlock/pidlock_test.go

@@ -4,6 +4,7 @@ import (
 	"os"
 	"path/filepath"
 	"strconv"
+	"sync"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
@@ -33,9 +34,10 @@ func TestAcquireAndRelease(t *testing.T) {
 	err = lock.Release()
 	require.NoError(t, err)
 
-	// Verify PID file is gone
-	_, err = os.Stat(pidPath)
-	assert.True(t, os.IsNotExist(err))
+	// Verify PID file is empty
+	data, err = os.ReadFile(pidPath) //nolint:gosec // G304: test's own temp file
+	require.NoError(t, err)
+	assert.Empty(t, data)
 }
 
 func TestAcquireBlocksSecondInstance(t *testing.T) {
@@ -55,6 +57,64 @@ func TestAcquireBlocksSecondInstance(t *testing.T) {
 	lock2, err := pidlock.Acquire(tmpDir)
 	require.ErrorIs(t, err, pidlock.ErrAlreadyRunning)
 	assert.Nil(t, lock2)
+
+	// Once the first lock is released, the next Acquire succeeds
+	require.NoError(t, lock1.Release())
+
+	lock3, err := pidlock.Acquire(tmpDir)
+	require.NoError(t, err)
+	require.NoError(t, lock3.Release())
+}
+
+// TestConcurrentAcquireAdmitsOne starts many Acquire calls at the same
+// moment, as two cron entries firing together would, and checks that
+// exactly one of them gets the lock.
+func TestConcurrentAcquireAdmitsOne(t *testing.T) {
+	t.Parallel()
+
+	const callers = 50
+
+	tmpDir := t.TempDir()
+	start := make(chan struct{})
+
+	var (
+		mu       sync.Mutex
+		acquired []*pidlock.Lock
+		failures []error
+		wg       sync.WaitGroup
+	)
+
+	for range callers {
+		wg.Go(func() {
+			<-start
+
+			lock, err := pidlock.Acquire(tmpDir)
+
+			mu.Lock()
+			defer mu.Unlock()
+
+			if err != nil {
+				failures = append(failures, err)
+
+				return
+			}
+
+			acquired = append(acquired, lock)
+		})
+	}
+
+	close(start)
+	wg.Wait()
+
+	for _, lock := range acquired {
+		require.NoError(t, lock.Release())
+	}
+
+	assert.Len(t, acquired, 1, "exactly one caller should hold the lock")
+
+	for _, err := range failures {
+		require.ErrorIs(t, err, pidlock.ErrAlreadyRunning)
+	}
 }
 
 func TestAcquireWithStaleLock(t *testing.T) {

internal/s3/client.go

@@ -6,6 +6,7 @@ import (
 	"context"
 	"errors"
 	"io"
+	"strings"
 	"sync/atomic"
 
 	"github.com/aws/aws-sdk-go-v2/aws"
@@ -26,10 +27,14 @@ type Client struct {
 	bucket   string
 	prefix   string
 	endpoint string
+	partSize int64
 }
 
 // Config contains S3 client configuration.
-// All fields are required except Prefix, which defaults to an empty string.
+// All fields are required except Prefix, which defaults to an empty string,
+// and PartSize, where zero means the SDK default of 5 MiB.
+// A non-empty Prefix is joined to every key with one "/", whether or not
+// it ends with one.
 // The Endpoint field should include the protocol (http:// or https://).
 type Config struct {
 	Endpoint        string
@@ -38,6 +43,9 @@ type Config struct {
 	AccessKeyID     string
 	SecretAccessKey string
 	Region          string
+	// PartSize is the size in bytes of each part of a multipart upload.
+	// An upload too large for S3's limit of 10,000 parts gets larger parts.
+	PartSize int64
 }
 
 // nopLogger is a logger that discards all output.
@@ -75,11 +83,19 @@ func NewClient(ctx context.Context, cfg Config) (*Client, error) {
 
 	s3Client := s3.NewFromConfig(awsCfg, s3Opts)
 
+	// Every method below builds a key as prefix + key, so the prefix
+	// must carry its own trailing "/".
+	prefix := strings.TrimRight(cfg.Prefix, "/")
+	if prefix != "" {
+		prefix += "/"
+	}
+
 	return &Client{
 		s3Client: s3Client,
 		bucket:   cfg.Bucket,
-		prefix:   cfg.Prefix,
+		prefix:   prefix,
 		endpoint: cfg.Endpoint,
+		partSize: cfg.PartSize,
 	}, nil
 }
 
@@ -113,12 +129,9 @@ func (c *Client) PutObjectWithProgress(
 ) error {
 	fullKey := c.prefix + key
 
-	// uploadPartSize is 10MB for better progress granularity.
-	const uploadPartSize = 10 * 1024 * 1024
-
 	// Create an uploader with the S3 client
 	uploader := manager.NewUploader(c.s3Client, func(u *manager.Uploader) {
-		u.PartSize = uploadPartSize
+		u.PartSize = uploadPartSize(c.partSize, size)
 	})
 
 	// Create a progress reader that tracks upload progress
@@ -139,6 +152,21 @@ func (c *Client) PutObjectWithProgress(
 	return err
 }
 
+// uploadPartSize returns the part size for an upload of size bytes: the
+// configured part size (the SDK default when zero), raised where needed so
+// the upload fits in S3's limit of 10,000 parts. The uploader cannot raise
+// it itself, because it cannot seek the progress reader to learn its size.
+func uploadPartSize(configured, size int64) int64 {
+	if configured == 0 {
+		configured = manager.DefaultUploadPartSize
+	}
+
+	maxParts := int64(manager.MaxUploadParts)
+	smallestThatFits := (size + maxParts - 1) / maxParts // rounded up
+
+	return max(configured, smallestThatFits)
+}
+
 // GetObject downloads an object from S3 with the specified key.
 // The key is automatically prefixed with the configured prefix.
 // Returns a ReadCloser containing the object data. The caller must

internal/s3/client_internal_test.go

@@ -0,0 +1,55 @@
+package s3
+
+import "testing"
+
+// TestUploadPartSize checks that an upload too large for 10,000 parts of the
+// configured size gets parts just large enough to fit in 10,000.
+func TestUploadPartSize(t *testing.T) {
+	t.Parallel()
+
+	const mib = 1024 * 1024
+
+	tests := []struct {
+		name       string
+		configured int64
+		size       int64
+		want       int64
+	}{
+		{
+			name:       "an upload that fits keeps the configured size",
+			configured: 5 * mib,
+			size:       10 * 1024 * mib,
+			want:       5 * mib,
+		},
+		{
+			name:       "exactly 10,000 parts keeps the configured size",
+			configured: 6 * mib,
+			size:       10_000 * 6 * mib,
+			want:       6 * mib,
+		},
+		{
+			name:       "one byte more than 10,000 parts adds a byte to each",
+			configured: 6 * mib,
+			size:       10_000*6*mib + 1,
+			want:       6*mib + 1,
+		},
+		{
+			name:       "zero means the SDK default of 5MiB",
+			configured: 0,
+			size:       1,
+			want:       5 * mib,
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			t.Parallel()
+
+			got := uploadPartSize(tt.configured, tt.size)
+			if got != tt.want {
+				t.Errorf("uploadPartSize(%d, %d) = %d, want %d",
+					tt.configured, tt.size, got, tt.want)
+			}
+		})
+	}
+}

internal/s3/module.go

@@ -28,6 +28,7 @@ func provideClient(lc fx.Lifecycle, cfg *config.Config) (*Client, error) {
 		AccessKeyID:     cfg.S3.AccessKeyID,
 		SecretAccessKey: cfg.S3.SecretAccessKey,
 		Region:          cfg.S3.Region,
+		PartSize:        cfg.S3.PartSize.Int64(),
 	})
 	if err != nil {
 		return nil, err

internal/snapshot/backup_test.go

@@ -71,7 +71,7 @@ func verifyBackupFiles(
 ) {
 	t.Helper()
 
-	files, err := repos.Files.ListByPrefix(ctx, "")
+	files, err := repos.Files.ListAll(ctx)
 	if err != nil {
 		t.Fatalf("Failed to list files: %v", err)
 	}

internal/snapshot/export_perm_test.go

@@ -1,40 +1,48 @@
-//nolint:testpackage // exercises the unexported copyFile helper
+//nolint:testpackage // exercises the unexported copyDatabase helper
 package snapshot
 
 import (
+	"context"
 	"os"
 	"path/filepath"
 	"syscall"
 	"testing"
 
 	"github.com/spf13/afero"
+	"sneak.berlin/go/vaultik/internal/database"
 )
 
-// TestCopyFileExportCopyMode verifies that the exported snapshot database
-// copy is created owner-only (0600), even under a lenient 022 umask that
-// would otherwise leave a fresh file world-readable.
+// TestCopyDatabaseExportCopyMode verifies that the exported snapshot
+// database copy is created owner-only (0600), even under a lenient 022
+// umask that would otherwise leave a fresh file world-readable.
 //
 //nolint:paralleltest // syscall.Umask is process-global; parallel tests would clash
-func TestCopyFileExportCopyMode(t *testing.T) {
+func TestCopyDatabaseExportCopyMode(t *testing.T) {
 	restore := syscall.Umask(0o022)
 	defer syscall.Umask(restore)
 
+	ctx := context.Background()
 	dir := t.TempDir()
 
 	src := filepath.Join(dir, "index.sqlite")
 
-	err := os.WriteFile(src, []byte("index data"), 0o600)
+	db, err := database.New(ctx, src)
 	if err != nil {
 		t.Fatalf("creating source index: %v", err)
 	}
 
+	err = db.Close()
+	if err != nil {
+		t.Fatalf("closing source index: %v", err)
+	}
+
 	dst := filepath.Join(dir, "snapshot.db")
 
 	sm := &SnapshotManager{fs: afero.NewOsFs()}
 
-	err = sm.copyFile(src, dst)
+	err = sm.copyDatabase(ctx, src, dst)
 	if err != nil {
-		t.Fatalf("copyFile: %v", err)
+		t.Fatalf("copyDatabase: %v", err)
 	}
 
 	info, err := os.Stat(dst)

internal/snapshot/progress.go

@@ -56,24 +56,27 @@ const (
 
 // ProgressStats holds atomic counters for progress tracking
 type ProgressStats struct {
-	FilesScanned     atomic.Int64 // Total files seen during scan (includes skipped)
-	FilesProcessed   atomic.Int64 // Files actually processed in phase 2
-	FilesSkipped     atomic.Int64 // Files skipped due to no changes
-	BytesScanned     atomic.Int64 // Bytes from new/changed files only
-	BytesSkipped     atomic.Int64 // Bytes from unchanged files
-	BytesProcessed   atomic.Int64 // Actual bytes processed (for ETA calculation)
-	ChunksCreated    atomic.Int64
-	BlobsCreated     atomic.Int64
-	BlobsUploaded    atomic.Int64
-	BytesUploaded    atomic.Int64
-	UploadDurationMs atomic.Int64 // Total milliseconds spent uploading
-	CurrentFile      atomic.Value // stores string
-	TotalSize        atomic.Int64 // Total size to process (set after scan phase)
-	TotalFiles       atomic.Int64 // Total files to process in phase 2
-	ProcessStartTime atomic.Value // stores time.Time when processing starts
-	StartTime        time.Time
-	mu               sync.RWMutex
-	lastDetailTime   time.Time
+	FilesScanned   atomic.Int64 // Total files seen during scan (includes skipped)
+	FilesProcessed atomic.Int64 // Files actually processed in phase 2
+	FilesSkipped   atomic.Int64 // Files skipped due to no changes
+	BytesScanned   atomic.Int64 // Bytes from new/changed files only
+	BytesSkipped   atomic.Int64 // Bytes from unchanged files
+	BytesProcessed atomic.Int64 // Actual bytes processed (for ETA calculation)
+	ChunksCreated  atomic.Int64
+	BlobsCreated   atomic.Int64
+	BlobsUploaded  atomic.Int64
+	BytesUploaded  atomic.Int64
+	CurrentFile    atomic.Value // stores string
+	TotalSize      atomic.Int64 // Size to process in the paths scanned so far
+	TotalFiles     atomic.Int64 // Files to process in the paths scanned so far
+	StartTime      time.Time
+	mu             sync.RWMutex
+	lastDetailTime time.Time
+
+	// Guarded by mu: when the last scan phase ended, and
+	// BytesProcessed at that moment.
+	processStartTime  time.Time
+	processStartBytes int64
 
 	// Upload tracking
 	CurrentUpload    atomic.Value // stores *UploadInfo
@@ -149,10 +152,36 @@ func (pr *ProgressReporter) GetStats() *ProgressStats {
 	return pr.stats
 }
 
-// SetTotalSize sets the total size to process (after scan phase)
-func (pr *ProgressReporter) SetTotalSize(size int64) {
-	pr.stats.TotalSize.Store(size)
-	pr.stats.ProcessStartTime.Store(time.Now().UTC())
+// AddTotalSize adds the size one path of the snapshot has to process to
+// the total, once that path's scan phase is done, and starts measuring
+// the processing rate again. The processed counts run across every path,
+// so the total does too. Restarting the rate keeps a path's scan phase,
+// which processes nothing, out of the rate while that path is processed.
+// During a later path's scan phase the rate is still the previous
+// path's, and falls as that scan goes on.
+func (pr *ProgressReporter) AddTotalSize(size int64) {
+	pr.stats.TotalSize.Add(size)
+
+	pr.stats.mu.Lock()
+	defer pr.stats.mu.Unlock()
+
+	pr.stats.processStartTime = time.Now().UTC()
+	pr.stats.processStartBytes = pr.stats.BytesProcessed.Load()
+}
+
+// processRate returns the bytes processed per second since the last scan
+// phase ended, or 0 before the first path's scan phase is done.
+func (s *ProgressStats) processRate() float64 {
+	s.mu.RLock()
+	defer s.mu.RUnlock()
+
+	if s.processStartTime.IsZero() {
+		return 0
+	}
+
+	processed := s.BytesProcessed.Load() - s.processStartBytes
+
+	return float64(processed) / time.Since(s.processStartTime).Seconds()
 }
 
 // Helper functions
@@ -231,9 +260,6 @@ func (pr *ProgressReporter) ReportUploadComplete(
 	// Clear current upload
 	pr.stats.CurrentUpload.Store((*UploadInfo)(nil))
 
-	// Add to total upload duration
-	pr.stats.UploadDurationMs.Add(duration.Milliseconds())
-
 	// Calculate speed
 	if duration < time.Millisecond {
 		duration = time.Millisecond
@@ -361,19 +387,12 @@ func (pr *ProgressReporter) printSummaryStatus() {
 	// Calculate ETA if we have total size and are processing
 	etaStr := ""
 
-	if totalSize > 0 && bytesProcessed > 0 {
-		processStart, ok := pr.stats.ProcessStartTime.Load().(time.Time)
-		if ok && !processStart.IsZero() {
-			processElapsed := time.Since(processStart)
-
-			rate := float64(bytesProcessed) / processElapsed.Seconds()
-			if rate > 0 {
-				remainingBytes := totalSize - bytesProcessed
-				remainingSeconds := float64(remainingBytes) / rate
-				eta := time.Duration(remainingSeconds * float64(time.Second))
-				etaStr = " | ETA: " + formatDuration(eta)
-			}
-		}
+	processRate := pr.stats.processRate()
+	if totalSize > 0 && processRate > 0 {
+		remainingBytes := totalSize - bytesProcessed
+		remainingSeconds := float64(remainingBytes) / processRate
+		eta := time.Duration(remainingSeconds * float64(time.Second))
+		etaStr = " | ETA: " + formatDuration(eta)
 	}
 
 	rate := float64(bytesScanned+bytesSkipped) / elapsed.Seconds()
@@ -425,25 +444,18 @@ func (pr *ProgressReporter) printDetailedStatus() {
 	log.Info("Elapsed time", "duration", formatDuration(elapsed))
 
 	// Calculate and show ETA if we have data
-	if totalSize > 0 && bytesProcessed > 0 {
-		processStart, ok := pr.stats.ProcessStartTime.Load().(time.Time)
-		if ok && !processStart.IsZero() {
-			processElapsed := time.Since(processStart)
-
-			processRate := float64(bytesProcessed) / processElapsed.Seconds()
-			if processRate > 0 {
-				remainingBytes := totalSize - bytesProcessed
-				remainingSeconds := float64(remainingBytes) / processRate
-				eta := time.Duration(remainingSeconds * float64(time.Second))
-				percentComplete := float64(bytesProcessed) / float64(totalSize) * percentScale
-				log.Info("Overall progress",
-					"percent", fmt.Sprintf("%.1f%%", percentComplete),
-					"processed", humanize.Bytes(safeUint64(bytesProcessed)),
-					"total", humanize.Bytes(safeUint64(totalSize)),
-					"rate", humanize.Bytes(uint64(processRate))+"/s",
-					"eta", formatDuration(eta))
-			}
-		}
+	processRate := pr.stats.processRate()
+	if totalSize > 0 && processRate > 0 {
+		remainingBytes := totalSize - bytesProcessed
+		remainingSeconds := float64(remainingBytes) / processRate
+		eta := time.Duration(remainingSeconds * float64(time.Second))
+		percentComplete := float64(bytesProcessed) / float64(totalSize) * percentScale
+		log.Info("Overall progress",
+			"percent", fmt.Sprintf("%.1f%%", percentComplete),
+			"processed", humanize.Bytes(safeUint64(bytesProcessed)),
+			"total", humanize.Bytes(safeUint64(totalSize)),
+			"rate", humanize.Bytes(uint64(processRate))+"/s",
+			"eta", formatDuration(eta))
 	}
 
 	log.Info("Files processed",

internal/snapshot/progress_rate_test.go

@@ -0,0 +1,54 @@
+//nolint:testpackage // exercises the unexported processRate helper
+package snapshot
+
+import (
+	"testing"
+	"time"
+)
+
+// TestProcessRateNotLoweredByLaterScanPhase feeds the reporter two paths
+// that each take 10 seconds to process, the second after a 30-second scan
+// phase. That scan phase processes nothing, so the rate while the second
+// path is processed must be that path's own.
+func TestProcessRateNotLoweredByLaterScanPhase(t *testing.T) {
+	t.Parallel()
+
+	const (
+		pathSize       = 1000
+		processingTime = 10 * time.Second
+		scanTime       = 30 * time.Second
+	)
+
+	// Never started, but Stop releases its tickers and signal handler.
+	progress := NewProgressReporter()
+	defer progress.Stop()
+
+	stats := progress.GetStats()
+
+	// Moves the processing start time back instead of sleeping.
+	elapse := func(d time.Duration) {
+		stats.mu.Lock()
+		defer stats.mu.Unlock()
+
+		stats.processStartTime = stats.processStartTime.Add(-d)
+	}
+
+	progress.AddTotalSize(pathSize)
+	stats.BytesProcessed.Add(pathSize)
+	elapse(processingTime)
+
+	elapse(scanTime)
+	progress.AddTotalSize(pathSize)
+	stats.BytesProcessed.Add(pathSize)
+	elapse(processingTime)
+
+	want := pathSize / processingTime.Seconds()
+	got := stats.processRate()
+
+	// The test's own run time adds to the elapsed time, so got is a hair
+	// under want.
+	if got > want || got < want*0.99 {
+		t.Errorf("rate while the second path is processed is %.1f bytes/s, "+
+			"want %.1f", got, want)
+	}
+}

internal/snapshot/progress_test.go

@@ -0,0 +1,94 @@
+package snapshot_test
+
+import (
+	"context"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	"github.com/spf13/afero"
+	"sneak.berlin/go/vaultik/internal/database"
+	"sneak.berlin/go/vaultik/internal/snapshot"
+)
+
+// TestProgressPercentWithSecondPathSmaller backs up two paths with one
+// scanner, as a snapshot with two paths does, the second path smaller
+// than the first. The progress line divides the bytes processed by the
+// total size, so both must count both paths to stay within 100%.
+func TestProgressPercentWithSecondPathSmaller(t *testing.T) {
+	t.Parallel()
+
+	fs := afero.NewMemMapFs()
+	files := map[string]string{
+		"/large/one.txt":   strings.Repeat("1", 4000),
+		"/large/two.txt":   strings.Repeat("2", 4000),
+		"/small/three.txt": strings.Repeat("3", 1000),
+	}
+
+	for path, content := range files {
+		err := fs.MkdirAll(filepath.Dir(path), 0755)
+		if err != nil {
+			t.Fatalf("mkdir: %v", err)
+		}
+
+		err = afero.WriteFile(fs, path, []byte(content), 0644)
+		if err != nil {
+			t.Fatalf("write %s: %v", path, err)
+		}
+	}
+
+	db, err := database.NewTestDB()
+	if err != nil {
+		t.Fatalf("create test db: %v", err)
+	}
+
+	t.Cleanup(func() {
+		cerr := db.Close()
+		if cerr != nil {
+			t.Errorf("close db: %v", cerr)
+		}
+	})
+
+	repos := database.NewRepositories(db)
+
+	scanner := snapshot.NewScanner(snapshot.ScannerConfig{
+		FS:               fs,
+		ChunkSize:        int64(1024 * 16),
+		Repositories:     repos,
+		MaxBlobSize:      int64(1024 * 1024),
+		CompressionLevel: 3,
+		AgeRecipients:    []string{testAgePublicKey},
+		EnableProgress:   true,
+	})
+
+	// Never started, but Stop releases its tickers and signal handler.
+	progress := scanner.GetProgress()
+	defer progress.Stop()
+
+	ctx := context.Background()
+	snapshotID := "test-snapshot-progress"
+	createTestSnapshotRecord(ctx, t, repos, snapshotID)
+
+	for _, path := range []string{"/large", "/small"} {
+		_, err := scanner.Scan(ctx, path, snapshotID)
+		if err != nil {
+			t.Fatalf("scanning %s: %v", path, err)
+		}
+	}
+
+	stats := progress.GetStats()
+
+	// Directories count toward the total size but produce no chunks, so
+	// the percentage ends just under 100%.
+	percent := float64(stats.BytesProcessed.Load()) /
+		float64(stats.TotalSize.Load()) * 100
+	if percent > 100 {
+		t.Errorf("progress after both paths is %.1f%%, want at most 100%%",
+			percent)
+	}
+
+	if stats.FilesProcessed.Load() != stats.TotalFiles.Load() {
+		t.Errorf("progress after both paths is %d of %d files, want all",
+			stats.FilesProcessed.Load(), stats.TotalFiles.Load())
+	}
+}

internal/snapshot/scanner.go

@@ -58,8 +58,8 @@ type Scanner struct {
 	compressionLevel int
 	ageRecipient     string
 	snapshotID       string // Current snapshot being processed
-	// currentSourcePath is the source directory being scanned (used for
-	// restore path stripping).
+	// currentSourcePath is the source directory being scanned, stored with
+	// each file record.
 	currentSourcePath string
 	exclude           []string          // Glob patterns for files/directories to exclude
 	compiledExclude   []compiledPattern // Compiled glob patterns
@@ -92,9 +92,6 @@ type Scanner struct {
 
 	// Mutex for coordinating blob creation
 	packerMu sync.Mutex // Blocks chunk production during blob creation
-
-	// Context for cancellation
-	scanCtx context.Context //nolint:containedctx // set per-Scan for packer callbacks
 }
 
 // Periodic status output intervals and thresholds for the scan and
@@ -134,18 +131,26 @@ type ScannerConfig struct {
 	SkipErrors bool
 }
 
-// ScanResult contains the results of a scan operation
+// ScanResult contains the results of a scan operation. Files and bytes
+// are counted per file: BytesScanned is the size of the new and changed
+// files, BytesSkipped that of the unchanged ones. FilesFailed counts the
+// new and changed files that phase 2 could not store; FilesScanned
+// includes them and BytesScanned does not.
 type ScanResult struct {
-	FilesScanned  int
-	FilesSkipped  int
-	FilesDeleted  int
-	BytesScanned  int64
-	BytesSkipped  int64
-	BytesDeleted  int64
-	ChunksCreated int
-	BlobsCreated  int
-	StartTime     time.Time
-	EndTime       time.Time
+	FilesScanned   int
+	FilesSkipped   int
+	FilesFailed    int
+	FilesDeleted   int
+	BytesScanned   int64
+	BytesSkipped   int64
+	BytesDeleted   int64
+	ChunksCreated  int
+	BlobsCreated   int
+	BlobsUploaded  int
+	BytesUploaded  int64
+	UploadDuration time.Duration
+	StartTime      time.Time
+	EndTime        time.Time
 }
 
 // NewScanner creates a new scanner instance
@@ -209,9 +214,7 @@ func (s *Scanner) Scan(
 	ctx context.Context, path string, snapshotID string,
 ) (*ScanResult, error) {
 	s.snapshotID = snapshotID
-	// Store source path for file records (used during restore)
 	s.currentSourcePath = path
-	s.scanCtx = ctx
 	result := &ScanResult{
 		StartTime: time.Now().UTC(),
 	}
@@ -219,17 +222,13 @@ func (s *Scanner) Scan(
 	// Set blob handler for concurrent upload
 	if s.storage != nil {
 		log.Debug("Setting blob handler for storage uploads")
-		s.packer.SetBlobHandler(s.handleBlobReady)
+		s.packer.SetBlobHandler(func(blobWithReader *blob.WithReader) error {
+			return s.handleBlobReady(ctx, blobWithReader, result)
+		})
 	} else {
 		log.Debug("No storage configured, blobs will not be uploaded")
 	}
 
-	// Start progress reporting if enabled
-	if s.progress != nil {
-		s.progress.Start()
-		defer s.progress.Stop()
-	}
-
 	// Phase 0: Repair any state left by an interrupted previous run, then
 	// load known files and chunks from the database into memory for fast
 	// lookup.
@@ -294,13 +293,14 @@ func (s *Scanner) Scan(
 		log.Info("Phase 2/3: Skipping (no files need processing, metadata-only snapshot)")
 	}
 
-	// Finalize result with blob statistics
-	s.finalizeScanResult(ctx, result)
+	result.EndTime = time.Now().UTC()
 
 	return result, nil
 }
 
-// GetProgress returns the progress reporter for this scanner
+// GetProgress returns the progress reporter for this scanner, or nil when
+// progress is off. Scan neither starts nor stops it: the caller does,
+// once for all the paths it scans, because a second Stop panics.
 func (s *Scanner) GetProgress() *ProgressReporter {
 	return s.progress
 }
@@ -410,8 +410,8 @@ func (s *Scanner) summarizeScanPhase(
 	}
 
 	if s.progress != nil {
-		s.progress.SetTotalSize(totalSizeToProcess)
-		s.progress.GetStats().TotalFiles.Store(int64(len(filesToProcess)))
+		s.progress.AddTotalSize(totalSizeToProcess)
+		s.progress.GetStats().TotalFiles.Add(int64(len(filesToProcess)))
 	}
 
 	log.Info("Phase 1 complete",
@@ -435,35 +435,16 @@ func (s *Scanner) summarizeScanPhase(
 	s.ui.Completef("%s.", msg)
 }
 
-// finalizeScanResult populates final blob statistics in the scan result
-// by querying the packer and database for blob/upload counts
-func (s *Scanner) finalizeScanResult(ctx context.Context, result *ScanResult) {
-	blobs := s.packer.GetFinishedBlobs()
-	result.BlobsCreated += len(blobs)
-
-	// Query database for actual blob count created during this snapshot
-	// The database is authoritative, especially for concurrent blob uploads
-	// We count uploads rather than all snapshot_blobs to get only NEW blobs
-	if s.snapshotID != "" {
-		uploadCount, err := s.repos.Uploads.GetCountBySnapshot(ctx, s.snapshotID)
-		if err != nil {
-			log.Warn("Failed to query upload count from database", "error", err)
-		} else {
-			result.BlobsCreated = int(uploadCount)
-		}
-	}
-
-	result.EndTime = time.Now().UTC()
-}
-
-// loadKnownFiles loads all known files from the database into a map for fast lookup
-// This avoids per-file database queries during the scan phase
+// loadKnownFiles loads the known files at and beneath path from the
+// database into a map for fast lookup. Every loaded file the scan does
+// not find is counted as deleted. This avoids per-file database queries
+// during the scan phase.
 func (s *Scanner) loadKnownFiles(
 	ctx context.Context, path string,
 ) (map[string]*database.File, error) {
-	files, err := s.repos.Files.ListByPrefix(ctx, path)
+	files, err := s.repos.Files.ListUnderPath(ctx, path)
 	if err != nil {
-		return nil, fmt.Errorf("listing files by prefix: %w", err)
+		return nil, fmt.Errorf("listing files under %s: %w", path, err)
 	}
 
 	result := make(map[string]*database.File, len(files))
@@ -911,9 +892,10 @@ func (s *Scanner) scanPhase(
 		}
 
 		// Handle symlinks and directories
-		if handled := s.recordSpecialEntry(
-			filePath, info, existingFiles, collector, result); handled {
-			return nil
+		handled, err := s.recordSpecialEntry(
+			filePath, info, existingFiles, collector, result)
+		if handled {
+			return err
 		}
 
 		// Skip other non-regular files (devices, sockets, etc.)
@@ -955,22 +937,25 @@ func (s *Scanner) scanPhase(
 }
 
 // recordSpecialEntry records symlinks and directories (which have no
-// data to chunk) and reports whether it handled the entry.
+// data to chunk) and reports whether it handled the entry. For a symlink
+// whose target cannot be read it returns handleWalkError's result.
 func (s *Scanner) recordSpecialEntry(
 	filePath string, info os.FileInfo,
 	existingFiles map[string]struct{},
 	collector *scanCollector, result *ScanResult,
-) bool {
+) (bool, error) {
 	// Handle symlinks
 	if info.Mode()&os.ModeSymlink != 0 {
-		file := s.buildSymlinkEntry(filePath, info)
-		if file != nil {
-			existingFiles[filePath] = struct{}{}
-			collector.addToProcess(filePath, info, file)
-			s.updateScanEntryStats(result, true, info)
+		file, err := s.buildSymlinkEntry(filePath, info)
+		if err != nil {
+			return true, s.handleWalkError(filePath, err)
 		}
 
-		return true
+		existingFiles[filePath] = struct{}{}
+		collector.addToProcess(filePath, info, file)
+		s.updateScanEntryStats(result, true, info)
+
+		return true, nil
 	}
 
 	// Handle directories (record for permission/ownership preservation
@@ -980,10 +965,10 @@ func (s *Scanner) recordSpecialEntry(
 		existingFiles[filePath] = struct{}{}
 		collector.addToProcess(filePath, info, file)
 
-		return true
+		return true, nil
 	}
 
-	return false
+	return false, nil
 }
 
 // handleWalkError deals with a filesystem error surfaced by the walk:
@@ -1133,13 +1118,12 @@ func (s *Scanner) printScanProgressLine(
 }
 
 // buildSymlinkEntry creates a File record for a symlink.
-// Returns nil if the link target cannot be read.
-func (s *Scanner) buildSymlinkEntry(path string, info os.FileInfo) *database.File {
+func (s *Scanner) buildSymlinkEntry(
+	path string, info os.FileInfo,
+) (*database.File, error) {
 	target, err := os.Readlink(path)
 	if err != nil {
-		log.Debug("Cannot read symlink target", "path", path, "error", err)
-
-		return nil
+		return nil, err
 	}
 
 	var uid, gid uint32
@@ -1158,7 +1142,7 @@ func (s *Scanner) buildSymlinkEntry(path string, info os.FileInfo) *database.Fil
 		UID:        uid,
 		GID:        gid,
 		LinkTarget: types.FilePath(target),
-	}
+	}, nil
 }
 
 // buildDirectoryEntry creates a File record for a directory.
@@ -1219,9 +1203,8 @@ func (s *Scanner) checkFileInMemory(
 	}
 
 	file := &database.File{
-		ID:   fileID,
-		Path: types.FilePath(path),
-		// Store source directory for restore path stripping
+		ID:         fileID,
+		Path:       types.FilePath(path),
 		SourcePath: types.SourcePath(s.currentSourcePath),
 		MTime:      info.ModTime(),
 		Size:       info.Size(),
@@ -1242,7 +1225,7 @@ func (s *Scanner) checkFileInMemory(
 
 	// Check if file has changed
 	if existingFile.Size != file.Size ||
-		existingFile.MTime.Unix() != file.MTime.Unix() ||
+		!existingFile.MTime.Equal(file.MTime) ||
 		existingFile.Mode != file.Mode ||
 		existingFile.UID != file.UID ||
 		existingFile.GID != file.GID {
@@ -1312,6 +1295,11 @@ func (s *Scanner) batchAddFilesToSnapshot(
 func (s *Scanner) processPhase(
 	ctx context.Context, filesToProcess []*FileToProcess, result *ScanResult,
 ) error {
+	// On an error or cancellation the blob being packed is never
+	// finalized, so its temp file must be removed here. After a
+	// successful flush there is no such blob and this does nothing.
+	defer s.packer.DiscardCurrentBlob()
+
 	// Calculate total bytes to process
 	var totalBytes int64
 	for _, f := range filesToProcess {
@@ -1329,6 +1317,13 @@ func (s *Scanner) processPhase(
 
 	// Process each file
 	for _, fileToProcess := range filesToProcess {
+		// Check context cancellation
+		select {
+		case <-ctx.Done():
+			return ctx.Err()
+		default:
+		}
+
 		// Update progress
 		if s.progress != nil {
 			s.progress.GetStats().CurrentFile.Store(fileToProcess.Path)
@@ -1365,20 +1360,38 @@ func (s *Scanner) processPhase(
 	return s.finalizeProcessPhase(ctx, result)
 }
 
-// processFileWithErrorHandling wraps processFileStreaming with error recovery for
-// deleted files and skip-errors mode. Returns (skipped, error).
+// processFileWithErrorHandling records a directory or symlink, or wraps
+// processFileStreaming for a regular file with error recovery for deleted
+// files and skip-errors mode. Returns (skipped, error).
 func (s *Scanner) processFileWithErrorHandling(
 	ctx context.Context, fileToProcess *FileToProcess, result *ScanResult,
 ) (bool, error) {
+	// A directory or symlink has no data to open or read; it is only
+	// recorded in the local index. An error recording it stops the run
+	// even under --skip-errors, or the snapshot would complete without it.
+	mode := os.FileMode(fileToProcess.File.Mode)
+	if mode&os.ModeSymlink != 0 || mode.IsDir() {
+		err := s.recordNonRegularFile(ctx, fileToProcess)
+		if err != nil {
+			return false, fmt.Errorf("processing file %s: %w", fileToProcess.Path, err)
+		}
+
+		return false, nil
+	}
+
 	err := s.processFileStreaming(ctx, fileToProcess, result)
 	if err != nil {
+		// A cancelled run stops here even under --skip-errors, rather than
+		// counting this file as failed and going on to the next one.
+		if ctx.Err() != nil {
+			return false, fmt.Errorf("processing file %s: %w", fileToProcess.Path, err)
+		}
 		// A packer/database/encryption/upload failure means the chunk's data
 		// may not have been stored. Skipping the file would let the snapshot
 		// record a file whose chunk is in no blob and cannot be restored, so
 		// abort the run even under --skip-errors. Only open and read errors
 		// are skipped below.
-		var pErr *packerError
-		if errors.As(err, &pErr) {
+		if _, ok := errors.AsType[*packerError](err); ok {
 			return false, fmt.Errorf("processing file %s: %w", fileToProcess.Path, err)
 		}
 		// Handle files that were deleted between scan and process phases
@@ -1386,7 +1399,7 @@ func (s *Scanner) processFileWithErrorHandling(
 			log.Warn("File was deleted during backup, skipping",
 				"path", fileToProcess.Path)
 
-			result.FilesSkipped++
+			countFailedFile(fileToProcess, result)
 
 			return true, nil
 		}
@@ -1397,7 +1410,7 @@ func (s *Scanner) processFileWithErrorHandling(
 			s.ui.Errorf("Failed to process %s: %v. Skipping (--skip-errors).",
 				s.ui.Path(fileToProcess.Path), err)
 
-			result.FilesSkipped++
+			countFailedFile(fileToProcess, result)
 
 			return true, nil
 		}
@@ -1408,6 +1421,13 @@ func (s *Scanner) processFileWithErrorHandling(
 	return false, nil
 }
 
+// countFailedFile counts a file that phase 2 could not store as failed
+// and takes its size back out of BytesScanned, where phase 1 put it.
+func countFailedFile(fileToProcess *FileToProcess, result *ScanResult) {
+	result.FilesFailed++
+	result.BytesScanned -= fileToProcess.FileInfo.Size()
+}
+
 // printProcessingProgress prints a periodic progress line during the process phase,
 // showing files processed, bytes transferred, throughput, and ETA
 func (s *Scanner) printProcessingProgress(
@@ -1514,24 +1534,24 @@ func (s *Scanner) finalizeProcessPhase(ctx context.Context, result *ScanResult)
 }
 
 // handleBlobReady is called by the packer when a blob is finalized
-func (s *Scanner) handleBlobReady(blobWithReader *blob.WithReader) error {
+func (s *Scanner) handleBlobReady(
+	ctx context.Context, blobWithReader *blob.WithReader, result *ScanResult,
+) error {
 	startTime := time.Now().UTC()
 	finishedBlob := blobWithReader.FinishedBlob
 
+	result.BlobsCreated++
+
 	if s.progress != nil {
 		s.progress.ReportUploadStart(finishedBlob.Hash, finishedBlob.Compressed)
 		s.progress.GetStats().BlobsCreated.Add(1)
 	}
 
-	ctx := s.scanCtx
-	if ctx == nil {
-		ctx = context.Background()
-	}
-
 	blobPath := fmt.Sprintf("blobs/%s/%s/%s",
 		finishedBlob.Hash[:2], finishedBlob.Hash[2:4], finishedBlob.Hash)
 
-	blobExists, err := s.uploadBlobIfNeeded(ctx, blobPath, blobWithReader, startTime)
+	blobExists, err := s.uploadBlobIfNeeded(
+		ctx, blobPath, blobWithReader, startTime, result)
 	if err != nil {
 		s.cleanupBlobTempFile(blobWithReader)
 
@@ -1566,6 +1586,7 @@ func (s *Scanner) uploadBlobIfNeeded(
 	blobPath string,
 	blobWithReader *blob.WithReader,
 	startTime time.Time,
+	result *ScanResult,
 ) (bool, error) {
 	finishedBlob := blobWithReader.FinishedBlob
 
@@ -1601,6 +1622,10 @@ func (s *Scanner) uploadBlobIfNeeded(
 	uploadDuration := time.Since(startTime)
 	uploadSpeedBps := float64(finishedBlob.Compressed) / uploadDuration.Seconds()
 
+	result.BlobsUploaded++
+	result.BytesUploaded += finishedBlob.Compressed
+	result.UploadDuration += uploadDuration
+
 	s.ui.Completef("Uploaded blob %s (%s) in %s at %s.",
 		s.ui.Hex(finishedBlob.Hash),
 		s.ui.Size(finishedBlob.Compressed),
@@ -1771,16 +1796,11 @@ func (e *packerError) Error() string { return e.err.Error() }
 
 func (e *packerError) Unwrap() error { return e.err }
 
-// processFileStreaming processes a file by streaming chunks directly to the packer
+// processFileStreaming processes a regular file by streaming chunks directly
+// to the packer
 func (s *Scanner) processFileStreaming(
 	ctx context.Context, fileToProcess *FileToProcess, result *ScanResult,
 ) error {
-	// Symlinks and directories have no data to chunk — just record them in the DB.
-	mode := os.FileMode(fileToProcess.File.Mode)
-	if mode&os.ModeSymlink != 0 || mode.IsDir() {
-		return s.recordNonRegularFile(ctx, fileToProcess)
-	}
-
 	file, err := s.fs.Open(fileToProcess.Path)
 	if err != nil {
 		return fmt.Errorf("opening file: %w", wrapPermissionError(fileToProcess.Path, err))
@@ -1816,9 +1836,9 @@ func (s *Scanner) processFileStreaming(
 			size:   chunk.Size,
 		})
 
-		s.updateChunkStats(chunkExists, chunk.Size, result)
-
 		if !chunkExists {
+			s.updateChunkStats(chunk.Size, result)
+
 			err := s.addChunkToPacker(ctx, chunk)
 			if err != nil {
 				// Mark as a packer error so --skip-errors cannot swallow it:
@@ -1846,26 +1866,16 @@ func (s *Scanner) processFileStreaming(
 	return nil
 }
 
-// updateChunkStats updates scan result and progress stats for a processed chunk
-func (s *Scanner) updateChunkStats(
-	chunkExists bool, chunkSize int64, result *ScanResult,
-) {
-	if chunkExists {
-		result.FilesSkipped++
+// updateChunkStats counts a chunk that was not already stored. The scan
+// result's file counts, BytesScanned and BytesSkipped are not touched
+// here: the scan phase counts each file once.
+func (s *Scanner) updateChunkStats(chunkSize int64, result *ScanResult) {
+	result.ChunksCreated++
 
-		result.BytesSkipped += chunkSize
-		if s.progress != nil {
-			s.progress.GetStats().BytesSkipped.Add(chunkSize)
-		}
-	} else {
-		result.ChunksCreated++
-		result.BytesScanned += chunkSize
-
-		if s.progress != nil {
-			s.progress.GetStats().ChunksCreated.Add(1)
-			s.progress.GetStats().BytesProcessed.Add(chunkSize)
-			s.progress.UpdateChunkingActivity()
-		}
+	if s.progress != nil {
+		s.progress.GetStats().ChunksCreated.Add(1)
+		s.progress.GetStats().BytesProcessed.Add(chunkSize)
+		s.progress.UpdateChunkingActivity()
 	}
 }
 

internal/snapshot/scanner_test.go

@@ -71,7 +71,7 @@ func verifySimpleScanDatabase(
 	t.Helper()
 
 	// Verify files in database - includes regular files and directories
-	files, err := repos.Files.ListByPrefix(ctx, "/source")
+	files, err := repos.Files.ListUnderPath(ctx, "/source")
 	if err != nil {
 		t.Fatalf("failed to list files: %v", err)
 	}

internal/snapshot/skip_errors_test.go

@@ -3,6 +3,7 @@ package snapshot_test
 import (
 	"context"
 	"errors"
+	"io"
 	"os"
 	"path/filepath"
 	"strings"
@@ -13,6 +14,7 @@ import (
 	"github.com/spf13/afero"
 	"sneak.berlin/go/vaultik/internal/database"
 	"sneak.berlin/go/vaultik/internal/snapshot"
+	"sneak.berlin/go/vaultik/internal/ui"
 )
 
 // errSimTempFail is the one-time temp-file creation failure blobTempFailFs
@@ -80,6 +82,56 @@ func (f *readFailFs) Open(name string) (afero.File, error) {
 	return file, nil
 }
 
+// cancelOnOpenFs cancels the run when the scanner opens the target file to
+// back it up, as Ctrl-C partway through processing would, and records each
+// file opened after that.
+type cancelOnOpenFs struct {
+	afero.Fs
+
+	target            string
+	cancel            context.CancelFunc
+	cancelled         bool
+	openedAfterCancel []string
+}
+
+//nolint:ireturn // afero.Fs.Open is defined to return the interface.
+func (f *cancelOnOpenFs) Open(name string) (afero.File, error) {
+	if f.cancelled {
+		f.openedAfterCancel = append(f.openedAfterCancel, name)
+	}
+
+	if name == f.target {
+		f.cancel()
+		f.cancelled = true
+	}
+
+	return f.Fs.Open(name)
+}
+
+// linkRemovedAfterLstatFs is the real filesystem, except that the symlink at
+// target is removed right after the walk lstats it, as happens when a link is
+// deleted during a backup. The scanner's readlink of it then fails.
+type linkRemovedAfterLstatFs struct {
+	afero.OsFs
+
+	t      *testing.T
+	target string
+}
+
+func (f *linkRemovedAfterLstatFs) LstatIfPossible(
+	name string,
+) (os.FileInfo, bool, error) {
+	info, lstatCalled, err := f.OsFs.LstatIfPossible(name)
+	if err == nil && name == f.target {
+		rmErr := os.Remove(name)
+		if rmErr != nil {
+			f.t.Errorf("removing %s: %v", name, rmErr)
+		}
+	}
+
+	return info, lstatCalled, err
+}
+
 // writeSkipErrorTestFile writes one file into fs with a fixed mtime.
 func writeSkipErrorTestFile(t *testing.T, fs afero.Fs, path, content string) {
 	t.Helper()
@@ -102,14 +154,16 @@ func writeSkipErrorTestFile(t *testing.T, fs afero.Fs, path, content string) {
 	}
 }
 
-// runSkipErrorScan scans /source on fs with the given skip-errors setting and
+// runSkipErrorScan scans source on fs under ctx with the given skip-errors
+// setting, printing user-facing messages to uiw (nil discards them), and
 // returns the repositories (for inspection) and the scan error.
 func runSkipErrorScan(
-	t *testing.T, fs afero.Fs, skipErrors bool,
+	ctx context.Context, t *testing.T, fs afero.Fs, source string,
+	skipErrors bool, uiw *ui.Writer,
 ) (*database.Repositories, error) {
 	t.Helper()
 
-	db, err := database.NewTestDB()
+	db, err := database.New(ctx, ":memory:")
 	if err != nil {
 		t.Fatalf("create test db: %v", err)
 	}
@@ -130,14 +184,14 @@ func runSkipErrorScan(
 		MaxBlobSize:      int64(1024 * 1024),
 		CompressionLevel: 3,
 		AgeRecipients:    []string{testAgePublicKey},
+		UI:               uiw,
 		SkipErrors:       skipErrors,
 	})
 
-	ctx := context.Background()
 	snapshotID := "test-snapshot-skip-errors"
 	createTestSnapshotRecord(ctx, t, repos, snapshotID)
 
-	_, err = scanner.Scan(ctx, "/source", snapshotID)
+	_, err = scanner.Scan(ctx, source, snapshotID)
 
 	return repos, err
 }
@@ -157,7 +211,7 @@ func TestScannerPackingFailureAbortsUnderSkipErrors(t *testing.T) {
 	writeSkipErrorTestFile(t, fs, "/source/file1.txt", "first file content")
 	writeSkipErrorTestFile(t, fs, "/source/file2.txt", "second file content")
 
-	repos, err := runSkipErrorScan(t, fs, true)
+	repos, err := runSkipErrorScan(context.Background(), t, fs, "/source", true, nil)
 	if err == nil {
 		t.Fatal("expected scan to abort on the packer error, got nil")
 	}
@@ -184,7 +238,7 @@ func TestScannerReadErrorAbortsWithoutSkipErrors(t *testing.T) {
 	fs := &readFailFs{Fs: afero.NewMemMapFs(), target: target}
 	writeSkipErrorTestFile(t, fs, target, "content that cannot be read")
 
-	_, err := runSkipErrorScan(t, fs, false)
+	_, err := runSkipErrorScan(context.Background(), t, fs, "/source", false, nil)
 	if err == nil {
 		t.Fatal("expected scan to fail on the read error, got nil")
 	}
@@ -200,7 +254,7 @@ func TestScannerReadErrorSkippedWithSkipErrors(t *testing.T) {
 	fs := &readFailFs{Fs: afero.NewMemMapFs(), target: target}
 	writeSkipErrorTestFile(t, fs, target, "content that cannot be read")
 
-	repos, err := runSkipErrorScan(t, fs, true)
+	repos, err := runSkipErrorScan(context.Background(), t, fs, "/source", true, nil)
 	if err != nil {
 		t.Fatalf("expected scan to complete with --skip-errors, got %v", err)
 	}
@@ -214,3 +268,173 @@ func TestScannerReadErrorSkippedWithSkipErrors(t *testing.T) {
 		t.Fatalf("expected unreadable file skipped, got %d chunks", len(chunks))
 	}
 }
+
+// writeSymlinkSource creates a source directory on disk holding one symlink
+// and returns the directory and the symlink's path.
+func writeSymlinkSource(t *testing.T) (string, string) {
+	t.Helper()
+
+	sourceDir := t.TempDir()
+	linkPath := filepath.Join(sourceDir, "link")
+
+	err := os.Symlink("target.txt", linkPath)
+	if err != nil {
+		t.Fatalf("creating symlink: %v", err)
+	}
+
+	return sourceDir, linkPath
+}
+
+// TestScannerUnreadableSymlinkAbortsWithoutSkipErrors checks that a symlink
+// whose target cannot be read aborts the run when --skip-errors is not set.
+func TestScannerUnreadableSymlinkAbortsWithoutSkipErrors(t *testing.T) {
+	t.Parallel()
+
+	sourceDir, linkPath := writeSymlinkSource(t)
+	fs := &linkRemovedAfterLstatFs{t: t, target: linkPath}
+
+	_, err := runSkipErrorScan(context.Background(), t, fs, sourceDir, false, nil)
+	if !errors.Is(err, os.ErrNotExist) {
+		t.Fatalf("expected scan to fail on the removed symlink, got %v", err)
+	}
+}
+
+// TestScannerUnreadableSymlinkSkippedWithSkipErrors checks that a symlink
+// whose target cannot be read is skipped with an error line, and the run
+// completes, when --skip-errors is set.
+func TestScannerUnreadableSymlinkSkippedWithSkipErrors(t *testing.T) {
+	t.Parallel()
+
+	sourceDir, linkPath := writeSymlinkSource(t)
+	fs := &linkRemovedAfterLstatFs{t: t, target: linkPath}
+	uiw := ui.NewWithColor(io.Discard, false)
+
+	repos, err := runSkipErrorScan(context.Background(), t, fs, sourceDir, true, uiw)
+	if err != nil {
+		t.Fatalf("expected scan to complete with --skip-errors, got %v", err)
+	}
+
+	if uiw.ErrorCount() != 1 {
+		t.Fatalf("expected one error line for the symlink, got %d",
+			uiw.ErrorCount())
+	}
+
+	file, err := repos.Files.GetByPath(context.Background(), linkPath)
+	if err != nil {
+		t.Fatalf("getting %s: %v", linkPath, err)
+	}
+
+	if file != nil {
+		t.Fatalf("expected %s not to be recorded", linkPath)
+	}
+}
+
+// TestScannerCancelStopsSkipErrorsRun checks that a --skip-errors backup
+// cancelled partway through processing returns the cancellation error,
+// opens no further file, and reports no file as failed.
+func TestScannerCancelStopsSkipErrorsRun(t *testing.T) {
+	t.Parallel()
+
+	tests := []struct {
+		name          string
+		targetContent string
+	}{
+		// The cancellation lands while the target is being read.
+		{name: "while reading a file", targetContent: "first file content"},
+		// An empty target has no chunks, so the cancellation goes unnoticed
+		// until the run moves on to the next file.
+		{name: "between files", targetContent: ""},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			t.Parallel()
+
+			const target = "/source/a.txt"
+
+			ctx, cancel := context.WithCancel(context.Background())
+			defer cancel()
+
+			fs := &cancelOnOpenFs{
+				Fs: afero.NewMemMapFs(), target: target, cancel: cancel,
+			}
+			writeSkipErrorTestFile(t, fs, target, tt.targetContent)
+			writeSkipErrorTestFile(t, fs, "/source/b.txt", "second file content")
+			writeSkipErrorTestFile(t, fs, "/source/c.txt", "third file content")
+
+			uiw := ui.NewWithColor(io.Discard, false)
+
+			_, err := runSkipErrorScan(ctx, t, fs, "/source", true, uiw)
+			if !errors.Is(err, context.Canceled) {
+				t.Fatalf("expected the cancellation error, got %v", err)
+			}
+
+			if len(fs.openedAfterCancel) != 0 {
+				t.Fatalf("expected no file opened after the cancellation, got %v",
+					fs.openedAfterCancel)
+			}
+
+			if uiw.ErrorCount() != 0 {
+				t.Fatalf("expected no file reported as failed, got %d error lines",
+					uiw.ErrorCount())
+			}
+		})
+	}
+}
+
+// TestScannerRemovesBlobTempFileWhenRunStops checks that a run stopped
+// part-way, by a file it cannot read or by a cancellation, removes the
+// temp file of the blob it was packing.
+func TestScannerRemovesBlobTempFileWhenRunStops(t *testing.T) {
+	t.Parallel()
+
+	// a.txt is backed up first and starts a blob; the run stops at b.txt.
+	const target = "/source/b.txt"
+
+	tests := []struct {
+		name  string
+		newFs func(cancel context.CancelFunc) afero.Fs
+	}{
+		{
+			name: "file cannot be read",
+			newFs: func(context.CancelFunc) afero.Fs {
+				return &readFailFs{Fs: afero.NewMemMapFs(), target: target}
+			},
+		},
+		{
+			name: "cancelled",
+			newFs: func(cancel context.CancelFunc) afero.Fs {
+				return &cancelOnOpenFs{
+					Fs: afero.NewMemMapFs(), target: target, cancel: cancel,
+				}
+			},
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			t.Parallel()
+
+			ctx, cancel := context.WithCancel(context.Background())
+			defer cancel()
+
+			fs := tt.newFs(cancel)
+			writeSkipErrorTestFile(t, fs, "/source/a.txt", "first file content")
+			writeSkipErrorTestFile(t, fs, target, "second file content")
+
+			_, err := runSkipErrorScan(ctx, t, fs, "/source", false, nil)
+			if err == nil {
+				t.Fatal("expected the scan to stop with an error, got nil")
+			}
+
+			left, err := afero.Glob(fs, filepath.Join(os.TempDir(), "vaultik-blob-*"))
+			if err != nil {
+				t.Fatalf("listing blob temp files: %v", err)
+			}
+
+			if len(left) != 0 {
+				t.Fatalf("expected no blob temp file left, got %v", left)
+			}
+		})
+	}
+}

internal/snapshot/snapshot.go

@@ -105,26 +105,47 @@ func (sm *SnapshotManager) CreateSnapshot(
 	return sm.CreateSnapshotWithName(ctx, hostname, "", version, gitRevision)
 }
 
+// ShortHostname returns hostname up to its first dot. A snapshot ID starts
+// with this form, while the snapshots table stores the full hostname.
+func ShortHostname(hostname string) string {
+	short, _, _ := strings.Cut(hostname, ".")
+
+	return short
+}
+
 // CreateSnapshotWithName creates a new snapshot record with an optional
 // snapshot name. The snapshot ID format is: hostname_name_timestamp or
-// hostname_timestamp if name is empty.
+// hostname_timestamp if name is empty. The timestamp is in whole seconds.
+// If the local index already has a snapshot with that ID, from a run of the
+// same name that started in the same second, it waits a second and takes a
+// new timestamp.
 func (sm *SnapshotManager) CreateSnapshotWithName(
 	ctx context.Context, hostname, name, version, gitRevision string,
 ) (string, error) {
-	// Use short hostname (strip domain if present)
-	shortHostname := hostname
-	if before, _, ok := strings.Cut(hostname, "."); ok {
-		shortHostname = before
-	}
-
-	// Build snapshot ID with optional name
-	timestamp := time.Now().UTC().Format("2006-01-02T15:04:05Z")
+	shortHostname := ShortHostname(hostname)
 
 	var snapshotID string
-	if name != "" {
-		snapshotID = fmt.Sprintf("%s_%s_%s", shortHostname, name, timestamp)
-	} else {
-		snapshotID = fmt.Sprintf("%s_%s", shortHostname, timestamp)
+
+	for {
+		// Build snapshot ID with optional name
+		timestamp := time.Now().UTC().Format("2006-01-02T15:04:05Z")
+
+		if name != "" {
+			snapshotID = fmt.Sprintf("%s_%s_%s", shortHostname, name, timestamp)
+		} else {
+			snapshotID = fmt.Sprintf("%s_%s", shortHostname, timestamp)
+		}
+
+		existing, err := sm.repos.Snapshots.GetByID(ctx, snapshotID)
+		if err != nil {
+			return "", fmt.Errorf("looking up snapshot %s: %w", snapshotID, err)
+		}
+
+		if existing == nil {
+			break
+		}
+
+		time.Sleep(time.Second)
 	}
 
 	snapshot := &database.Snapshot{
@@ -154,26 +175,6 @@ func (sm *SnapshotManager) CreateSnapshotWithName(
 	return snapshotID, nil
 }
 
-// UpdateSnapshotStats updates the statistics for a snapshot during backup
-func (sm *SnapshotManager) UpdateSnapshotStats(
-	ctx context.Context, snapshotID string, stats BackupStats,
-) error {
-	err := sm.repos.WithTx(ctx, func(ctx context.Context, tx *sql.Tx) error {
-		return sm.repos.Snapshots.UpdateCounts(ctx, tx, snapshotID,
-			int64(stats.FilesScanned),
-			int64(stats.ChunksCreated),
-			int64(stats.BlobsCreated),
-			stats.BytesScanned,
-			stats.BytesUploaded,
-		)
-	})
-	if err != nil {
-		return fmt.Errorf("updating snapshot stats: %w", err)
-	}
-
-	return nil
-}
-
 // UpdateSnapshotStatsExtended updates snapshot statistics with extended metrics.
 // This includes compression level, uncompressed blob size, and upload duration.
 func (sm *SnapshotManager) UpdateSnapshotStatsExtended(
@@ -185,8 +186,8 @@ func (sm *SnapshotManager) UpdateSnapshotStatsExtended(
 			int64(stats.FilesScanned),
 			int64(stats.ChunksCreated),
 			int64(stats.BlobsCreated),
-			stats.BytesScanned,
-			stats.BytesUploaded,
+			stats.TotalSize,
+			stats.BlobSize,
 		)
 		if err != nil {
 			return err
@@ -196,6 +197,7 @@ func (sm *SnapshotManager) UpdateSnapshotStatsExtended(
 		return sm.repos.Snapshots.UpdateExtendedStats(ctx, tx, snapshotID,
 			stats.BlobUncompressedSize,
 			stats.CompressionLevel,
+			stats.BytesUploaded,
 			stats.UploadDurationMs,
 		)
 	})
@@ -386,12 +388,12 @@ func (sm *SnapshotManager) prepareExportDB(
 	ctx context.Context, dbPath, snapshotID, tempDir string,
 ) ([]byte, string, error) {
 	// Step 1: Copy database to temp file
-	// The main database should be closed at this point
+	// The main database is still open here, so it is copied through SQLite
 	tempDBPath := filepath.Join(tempDir, "snapshot.db")
 	log.Debug("Copying database to temporary location",
 		"source", dbPath, "destination", tempDBPath)
 
-	err := sm.copyFile(dbPath, tempDBPath)
+	err := sm.copyDatabase(ctx, dbPath, tempDBPath)
 	if err != nil {
 		return nil, "", fmt.Errorf("copying database: %w", err)
 	}
@@ -648,9 +650,10 @@ func (sm *SnapshotManager) collectCleanupStats(
 //
 // VACUUM runs through the modernc.org/sqlite driver, on a freshly opened
 // connection with no transaction in flight (VACUUM cannot run inside one).
-// The database opens in WAL mode, so VACUUM's rewrite lands in the WAL; the
-// checkpoint on Close flushes it into the main file, which is the file we
-// then compress and upload.
+// database.New opens the file in WAL mode, so VACUUM's rewrite lands in the
+// -wal file. This is the only connection to the file, so closing it
+// checkpoints the rewrite into the main file and removes the -wal file; the
+// main file is the one compressFile then compresses and uploads.
 func (sm *SnapshotManager) vacuumDatabase(ctx context.Context, dbPath string) error {
 	log.Debug("Running VACUUM on database", "path", dbPath)
 
@@ -744,26 +747,15 @@ func (sm *SnapshotManager) compressFile(inputPath, outputPath string) error {
 // user; it holds the same private index data as the local index file.
 const exportCopyPerm = 0o600
 
-// copyFile copies a file from src to dst. The destination is the exported
-// snapshot database, so it is created owner-only rather than with the
-// umask-dependent default.
-func (sm *SnapshotManager) copyFile(src, dst string) error {
-	log.Debug("Opening source file for copy", "path", src)
-
-	sourceFile, err := sm.fs.Open(src)
-	if err != nil {
-		return err
-	}
-
-	defer func() {
-		log.Debug("Closing source file", "path", src)
-
-		err := sourceFile.Close()
-		if err != nil {
-			log.Debug("Failed to close source file", "path", src, "error", err)
-		}
-	}()
-
+// copyDatabase copies the database at src to dst with VACUUM INTO. It reads
+// through SQLite, so the copy holds rows committed to src that are still in
+// its -wal file, which a copy of the file alone would miss. The destination
+// is the exported snapshot database, so it is created empty and owner-only
+// first rather than with the umask-dependent default: VACUUM INTO writes
+// into an existing empty file and keeps its mode.
+func (sm *SnapshotManager) copyDatabase(
+	ctx context.Context, src, dst string,
+) error {
 	log.Debug("Creating destination file", "path", dst)
 
 	destFile, err := sm.fs.OpenFile(
@@ -773,23 +765,28 @@ func (sm *SnapshotManager) copyFile(src, dst string) error {
 		return err
 	}
 
-	defer func() {
-		log.Debug("Closing destination file", "path", dst)
-
-		err := destFile.Close()
-		if err != nil {
-			log.Debug("Failed to close destination file", "path", dst, "error", err)
-		}
-	}()
-
-	log.Debug("Copying file data")
-
-	n, err := io.Copy(destFile, sourceFile)
+	err = destFile.Close()
 	if err != nil {
 		return err
 	}
 
-	log.Debug("File copy complete", "bytes_copied", n)
+	db, err := database.New(ctx, src)
+	if err != nil {
+		return fmt.Errorf("opening database to copy: %w", err)
+	}
+
+	defer func() {
+		cerr := db.Close()
+		if cerr != nil {
+			log.Debug("Failed to close database after copy",
+				"path", src, "error", cerr)
+		}
+	}()
+
+	_, err = db.ExecWithLog(ctx, "VACUUM INTO ?", dst)
+	if err != nil {
+		return fmt.Errorf("running VACUUM INTO: %w", err)
+	}
 
 	return nil
 }
@@ -895,7 +892,7 @@ func (sm *SnapshotManager) getFileSize(path string) int64 {
 // BackupStats contains statistics from a backup operation
 type BackupStats struct {
 	FilesScanned  int
-	BytesScanned  int64
+	TotalSize     int64 // Total size of the files in the snapshot
 	ChunksCreated int
 	BlobsCreated  int
 	BytesUploaded int64
@@ -905,6 +902,7 @@ type BackupStats struct {
 type ExtendedBackupStats struct {
 	BackupStats
 
+	BlobSize             int64 // Total compressed size of all referenced blobs
 	BlobUncompressedSize int64 // Total uncompressed size of all referenced blobs
 	CompressionLevel     int   // Compression level used for this snapshot
 	UploadDurationMs     int64 // Total milliseconds spent uploading to S3

internal/snapshot/snapshot_test.go

@@ -188,6 +188,77 @@ func TestVacuumDatabaseRemovesDeletedData(t *testing.T) {
 	}
 }
 
+// TestPrepareExportDBKeepsRowsCommittedToOpenIndex exports from an index
+// that is still open, as a backup does. A row committed there can still be
+// in the index's -wal file, and the export must hold it all the same.
+func TestPrepareExportDBKeepsRowsCommittedToOpenIndex(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	fs := afero.NewOsFs()
+
+	dbPath := filepath.Join(t.TempDir(), "index.sqlite")
+
+	db, err := database.New(ctx, dbPath)
+	if err != nil {
+		t.Fatalf("failed to create database: %v", err)
+	}
+
+	defer func() { _ = db.Close() }()
+
+	repos := database.NewRepositories(db)
+
+	snapshot := &database.Snapshot{ID: "open-index-snapshot", Hostname: "test-host"}
+
+	err = repos.WithTx(ctx, func(ctx context.Context, tx *sql.Tx) error {
+		return repos.Snapshots.Create(ctx, tx, snapshot)
+	})
+	if err != nil {
+		t.Fatalf("failed to create snapshot: %v", err)
+	}
+
+	sm := &SnapshotManager{
+		config: &config.Config{
+			CompressionLevel: 3,
+			AgeRecipients:    []string{testAgeRecipient},
+		},
+		fs: fs,
+	}
+
+	_, tempDBPath, err := sm.prepareExportDB(
+		ctx, dbPath, snapshot.ID.String(), t.TempDir())
+	if err != nil {
+		t.Fatalf("prepareExportDB failed: %v", err)
+	}
+
+	// Only the main database file is compressed and uploaded, so open a
+	// copy of that file alone.
+	uploadedPath := filepath.Join(t.TempDir(), "uploaded.db")
+
+	err = copyFile(fs, tempDBPath, uploadedPath)
+	if err != nil {
+		t.Fatalf("failed to copy exported database: %v", err)
+	}
+
+	exported, err := database.OpenReadOnly(ctx, uploadedPath)
+	if err != nil {
+		t.Fatalf("failed to open exported database: %v", err)
+	}
+
+	defer func() { _ = exported.Close() }()
+
+	got, err := database.NewRepositories(exported).Snapshots.GetByID(
+		ctx, snapshot.ID.String())
+	if err != nil {
+		t.Fatalf("failed to read snapshot from export: %v", err)
+	}
+
+	if got == nil {
+		t.Fatal("exported database is missing the snapshot row")
+	}
+}
+
 func TestCleanSnapshotDBEmptySnapshot(t *testing.T) {
 	// Initialize logger
 	log.Initialize(log.Config{})
@@ -315,3 +386,36 @@ func TestCleanSnapshotDBNonExistentSnapshot(t *testing.T) {
 		t.Fatalf("unexpected error: %v", err)
 	}
 }
+
+// Two creates of one snapshot name back to back start within one second,
+// the resolution of the timestamp in a snapshot ID. See
+// https://git.eeqj.de/sneak/vaultik/issues/270.
+func TestCreateSnapshotWithNameTwiceBackToBack(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+
+	db, err := database.New(ctx, filepath.Join(t.TempDir(), "index.sqlite"))
+	if err != nil {
+		t.Fatalf("failed to create database: %v", err)
+	}
+
+	defer func() { _ = db.Close() }()
+
+	sm := &SnapshotManager{repos: database.NewRepositories(db)}
+
+	first, err := sm.CreateSnapshotWithName(ctx, "test-host", "data", "v", "g")
+	if err != nil {
+		t.Fatalf("first create failed: %v", err)
+	}
+
+	second, err := sm.CreateSnapshotWithName(ctx, "test-host", "data", "v", "g")
+	if err != nil {
+		t.Fatalf("second create failed: %v", err)
+	}
+
+	if first == second {
+		t.Fatalf("both creates returned snapshot ID %s", first)
+	}
+}

internal/storage/conformance_test.go

@@ -14,8 +14,9 @@ import (
 
 // runStorerConformance is the shared Storer contract. Every backend that
 // can run in-process is expected to pass it: TestFileStorer runs it against
-// file://, TestS3Storer against s3://. A new backend inherits this coverage
-// by passing its own constructor, so the contract is defined once.
+// file://, TestS3Storer against s3://, TestRcloneStorer against rclone's
+// local backend. A new backend inherits this coverage by passing its own
+// constructor, so the contract is defined once.
 //
 // It exercises the public Storer interface: round-trip, stat, list with
 // prefix filtering, overwrite, delete, delete-of-missing, and not-found on

internal/storage/faultstore/faultstore.go

@@ -171,6 +171,11 @@ func (f *Storer) ListStream(
 	return f.inner.ListStream(ctx, prefix)
 }
 
+// DeletePartialUploads delegates unchanged.
+func (f *Storer) DeletePartialUploads(ctx context.Context, prefix string) error {
+	return f.inner.DeletePartialUploads(ctx, prefix)
+}
+
 // Info delegates unchanged.
 func (f *Storer) Info() storage.Info {
 	return f.inner.Info()

internal/storage/file.go

@@ -21,9 +21,10 @@ type FileStorer struct {
 // NewFileStorer creates a new filesystem storage backend.
 //
 // Construction is intentionally cheap and does not touch the filesystem.
-// The basePath is recorded; the directory is created lazily on first
-// write. Write operations (Put/PutWithProgress) call MkdirAll for the
-// per-blob parent directory, which also covers basePath on first use.
+// The backend never creates basePath: the user does, so that a write to
+// an unplugged volume fails instead of landing on the disk under its
+// empty mount point. Put and PutWithProgress fail on a missing basePath
+// and create the directories below it as needed.
 // Get and Stat report a key under a missing basePath as ErrNotFound.
 // List and ListStream fail on a missing basePath, because listing it as
 // an empty store would make `prune` drop every local snapshot record.
@@ -50,9 +51,10 @@ const storageDirPerm = 0o755
 // temp file carrying this suffix and only renames it onto the real key once
 // the whole object is on disk, so an interrupted write can never leave a
 // truncated object at the key a later run would Stat and trust as a complete
-// blob. List and ListStream skip these files, so a leftover from an
-// interrupted write is never listed or trusted as a blob; it is otherwise
-// harmless and is overwritten when the same key is written again.
+// blob. The rclone backend's upload does the same on remotes with a
+// server-side move. List and ListStream skip these files, so a leftover from
+// an interrupted write is never listed or trusted as a blob; it is otherwise
+// harmless.
 const tempSuffix = ".partial"
 
 // Put stores data at the specified key.
@@ -241,6 +243,42 @@ func (f *FileStorer) ListStream(ctx context.Context, prefix string) <-chan Objec
 	return ch
 }
 
+// DeletePartialUploads removes every file under prefix whose name ends in
+// tempSuffix. A missing prefix has none to remove.
+func (f *FileStorer) DeletePartialUploads(ctx context.Context, prefix string) error {
+	basePath := f.fullPath(prefix)
+
+	exists, err := afero.Exists(f.fs, basePath)
+	if err != nil {
+		return fmt.Errorf("checking path: %w", err)
+	}
+
+	if !exists {
+		return nil
+	}
+
+	err = afero.Walk(f.fs, basePath, func(path string, info os.FileInfo, err error) error {
+		if err != nil {
+			return err
+		}
+
+		if ctx.Err() != nil {
+			return ctx.Err()
+		}
+
+		if info.IsDir() || !strings.HasSuffix(info.Name(), tempSuffix) {
+			return nil
+		}
+
+		return f.fs.Remove(path)
+	})
+	if err != nil {
+		return fmt.Errorf("walking directory: %w", err)
+	}
+
+	return nil
+}
+
 // Info returns human-readable storage location information.
 func (f *FileStorer) Info() Info {
 	return Info{
@@ -260,7 +298,19 @@ func (f *FileStorer) writeAtomic(
 	path := f.fullPath(key)
 	dir := filepath.Dir(path)
 
-	err := f.fs.MkdirAll(dir, storageDirPerm)
+	// Checked on every write, so a destination that disappears part-way
+	// through a backup fails it rather than being recreated by MkdirAll.
+	_, err := f.fs.Stat(f.basePath)
+	if os.IsNotExist(err) {
+		return fmt.Errorf("destination directory does not exist; "+
+			"create it, or mount the volume it is on: %w", err)
+	}
+
+	if err != nil {
+		return fmt.Errorf("checking destination directory: %w", err)
+	}
+
+	err = f.fs.MkdirAll(dir, storageDirPerm)
 	if err != nil {
 		return fmt.Errorf("creating directories: %w", err)
 	}

internal/storage/file_atomic_test.go

@@ -14,6 +14,9 @@ import (
 // errStreamInterrupted stands in for an upload cut off mid-stream.
 var errStreamInterrupted = errors.New("connection reset mid-upload")
 
+// testBlobKey is a key laid out as a blob's key is.
+const testBlobKey = "blobs/aa/bb/aabbccddeeff"
+
 // failingReader yields its data once, then fails.
 type failingReader struct {
 	data []byte
@@ -43,7 +46,7 @@ func TestFileStorer_InterruptedWriteLeavesNoTrustedObject(t *testing.T) {
 	}
 
 	ctx := context.Background()
-	key := "blobs/aa/bb/aabbccddeeff"
+	key := testBlobKey
 
 	err = f.PutWithProgress(ctx, key, &failingReader{data: []byte("partial")}, 4096, nil)
 	if err == nil {
@@ -79,7 +82,7 @@ func TestFileStorer_ListSkipsPartialFiles(t *testing.T) {
 	}
 
 	ctx := context.Background()
-	realKey := "blobs/aa/bb/aabbccddeeff"
+	realKey := testBlobKey
 
 	err = f.Put(ctx, realKey, strings.NewReader("blob-bytes"))
 	if err != nil {
@@ -117,3 +120,45 @@ func TestFileStorer_ListSkipsPartialFiles(t *testing.T) {
 		t.Fatalf("ListStream should return only the real key, got %v", streamed)
 	}
 }
+
+// TestFileStorer_DeletePartialUploads checks that a leftover temp file is
+// removed and the object at the real key is kept.
+func TestFileStorer_DeletePartialUploads(t *testing.T) {
+	t.Parallel()
+
+	base := t.TempDir()
+
+	f, err := storage.NewFileStorer(base)
+	if err != nil {
+		t.Fatalf("NewFileStorer: %v", err)
+	}
+
+	ctx := context.Background()
+
+	err = f.Put(ctx, testBlobKey, strings.NewReader("blob-bytes"))
+	if err != nil {
+		t.Fatalf("Put: %v", err)
+	}
+
+	leftover := filepath.Join(base, testBlobKey+"-123456.partial")
+
+	err = os.WriteFile(leftover, []byte("half"), 0o600)
+	if err != nil {
+		t.Fatalf("writing leftover temp file: %v", err)
+	}
+
+	err = f.DeletePartialUploads(ctx, "blobs/")
+	if err != nil {
+		t.Fatalf("DeletePartialUploads: %v", err)
+	}
+
+	_, err = os.Stat(leftover)
+	if !os.IsNotExist(err) {
+		t.Errorf("leftover temp file was not removed: %v", err)
+	}
+
+	_, err = f.Stat(ctx, testBlobKey)
+	if err != nil {
+		t.Errorf("Stat of the real key: %v", err)
+	}
+}

internal/storage/file_backend_test.go

@@ -4,7 +4,9 @@ import (
 	"context"
 	"errors"
 	"io/fs"
+	"os"
 	"path/filepath"
+	"strings"
 	"testing"
 
 	"sneak.berlin/go/vaultik/internal/storage"
@@ -60,3 +62,43 @@ func TestFileStorerListMissingDestination(t *testing.T) {
 		t.Errorf("ListStream error = %v, want a not-exist error", streamErr)
 	}
 }
+
+// TestFileStorerPutMissingDestination checks that a write fails when the
+// destination directory has gone, even after earlier writes to it
+// succeeded, and that it does not create the directory again.
+func TestFileStorerPutMissingDestination(t *testing.T) {
+	t.Parallel()
+
+	ctx := context.Background()
+	base := filepath.Join(t.TempDir(), "usbstick")
+
+	err := os.Mkdir(base, 0o750)
+	if err != nil {
+		t.Fatalf("Mkdir: %v", err)
+	}
+
+	s, err := storage.NewFileStorer(base)
+	if err != nil {
+		t.Fatalf("NewFileStorer: %v", err)
+	}
+
+	err = s.Put(ctx, "blobs/aa/bb/first", strings.NewReader("first"))
+	if err != nil {
+		t.Fatalf("first Put: %v", err)
+	}
+
+	err = os.Rename(base, base+"-unplugged")
+	if err != nil {
+		t.Fatalf("Rename: %v", err)
+	}
+
+	err = s.Put(ctx, "blobs/aa/bb/second", strings.NewReader("second"))
+	if !errors.Is(err, fs.ErrNotExist) {
+		t.Errorf("Put = %v, want a not-exist error", err)
+	}
+
+	_, err = os.Stat(base)
+	if !errors.Is(err, fs.ErrNotExist) {
+		t.Errorf("Put created the destination directory again (Stat = %v)", err)
+	}
+}

internal/storage/module.go

@@ -99,6 +99,7 @@ func storerFromParsedS3URL(parsed *URL, cfg *config.Config) (Storer, error) {
 		AccessKeyID:     cfg.S3.AccessKeyID,
 		SecretAccessKey: cfg.S3.SecretAccessKey,
 		Region:          region,
+		PartSize:        cfg.S3.PartSize.Int64(),
 	})
 	if err != nil {
 		return nil, fmt.Errorf("creating S3 client: %w", err)
@@ -134,6 +135,7 @@ func storerFromLegacyS3Config(cfg *config.Config) (Storer, error) {
 		AccessKeyID:     cfg.S3.AccessKeyID,
 		SecretAccessKey: cfg.S3.SecretAccessKey,
 		Region:          region,
+		PartSize:        cfg.S3.PartSize.Int64(),
 	})
 	if err != nil {
 		return nil, fmt.Errorf("creating S3 client: %w", err)

internal/storage/rclone.go

@@ -3,6 +3,7 @@ package storage
 import (
 	"bytes"
 	"context"
+	"crypto/rand"
 	"errors"
 	"fmt"
 	"io"
@@ -68,14 +69,7 @@ func (r *RcloneStorer) Put(ctx context.Context, key string, data io.Reader) erro
 		return fmt.Errorf("reading data: %w", err)
 	}
 
-	// Upload the object
-	_, err = operations.Rcat(ctx, r.fsys, key,
-		io.NopCloser(bytes.NewReader(buf)), time.Now(), nil)
-	if err != nil {
-		return fmt.Errorf("uploading object: %w", err)
-	}
-
-	return nil
+	return r.upload(ctx, key, bytes.NewReader(buf))
 }
 
 // PutWithProgress stores data with progress reporting.
@@ -89,13 +83,7 @@ func (r *RcloneStorer) PutWithProgress(
 		callback: progress,
 	}
 
-	// Upload the object
-	_, err := operations.Rcat(ctx, r.fsys, key, io.NopCloser(pr), time.Now(), nil)
-	if err != nil {
-		return fmt.Errorf("uploading object: %w", err)
-	}
-
-	return nil
+	return r.upload(ctx, key, pr)
 }
 
 // Get retrieves data from the specified key.
@@ -173,6 +161,10 @@ func (r *RcloneStorer) List(ctx context.Context, prefix string) ([]string, error
 
 	err := operations.ListFn(ctx, r.fsys, func(obj fs.Object) {
 		key := obj.Remote()
+		if strings.HasSuffix(key, tempSuffix) {
+			return
+		}
+
 		if prefix == "" || strings.HasPrefix(key, prefix) {
 			keys = append(keys, key)
 		}
@@ -202,6 +194,10 @@ func (r *RcloneStorer) ListStream(
 			}
 
 			key := obj.Remote()
+			if strings.HasSuffix(key, tempSuffix) {
+				return
+			}
+
 			if prefix == "" || strings.HasPrefix(key, prefix) {
 				ch <- ObjectInfo{
 					Key:  key,
@@ -217,6 +213,31 @@ func (r *RcloneStorer) ListStream(
 	return ch
 }
 
+// DeletePartialUploads removes every object under prefix whose name ends
+// in tempSuffix.
+func (r *RcloneStorer) DeletePartialUploads(ctx context.Context, prefix string) error {
+	var partial []fs.Object
+
+	err := operations.ListFn(ctx, r.fsys, func(obj fs.Object) {
+		key := obj.Remote()
+		if strings.HasPrefix(key, prefix) && strings.HasSuffix(key, tempSuffix) {
+			partial = append(partial, obj)
+		}
+	})
+	if err != nil {
+		return fmt.Errorf("listing objects: %w", err)
+	}
+
+	for _, obj := range partial {
+		err = obj.Remove(ctx)
+		if err != nil {
+			return fmt.Errorf("removing object: %w", err)
+		}
+	}
+
+	return nil
+}
+
 // Info returns human-readable storage location information.
 func (r *RcloneStorer) Info() Info {
 	location := r.remote
@@ -230,6 +251,59 @@ func (r *RcloneStorer) Info() Info {
 	}
 }
 
+// upload writes data to key. Where the remote has a server-side move, it
+// writes under a temporary name ending in tempSuffix and moves the object
+// onto key once it is complete, so a killed upload cannot leave a truncated
+// object at key; a remote without one is written in place. List and
+// ListStream skip a temporary object left behind.
+//
+// rclone's own copy does this only where the remote also sets
+// PartialUploads. That flag is not checked here: hdfs, for one, shows a
+// file while it is written without setting it.
+func (r *RcloneStorer) upload(ctx context.Context, key string, data io.Reader) error {
+	if r.fsys.Features().Move == nil {
+		_, err := operations.Rcat(ctx, r.fsys, key, io.NopCloser(data), time.Now(), nil)
+		if err != nil {
+			return fmt.Errorf("uploading object: %w", err)
+		}
+
+		return nil
+	}
+
+	tempKey := key + "-" + rand.Text() + tempSuffix
+
+	obj, err := operations.Rcat(ctx, r.fsys, tempKey, io.NopCloser(data), time.Now(), nil)
+	if err != nil {
+		// Rcat returns the object it wrote when the written data fails its check.
+		if obj != nil {
+			_ = obj.Remove(ctx)
+		}
+
+		return fmt.Errorf("uploading object: %w", err)
+	}
+
+	// On drive, dropbox, onedrive and others the remote's own move does not
+	// replace an object already at key. operations.Move removes the object
+	// it is given first, and copies where the remote refuses the move.
+	existing, err := r.fsys.NewObject(ctx, key)
+	if errors.Is(err, fs.ErrorObjectNotFound) {
+		existing = nil
+	} else if err != nil {
+		_ = obj.Remove(ctx)
+
+		return fmt.Errorf("looking up existing object: %w", err)
+	}
+
+	_, err = operations.Move(ctx, r.fsys, existing, key, obj)
+	if err != nil {
+		_ = obj.Remove(ctx)
+
+		return fmt.Errorf("moving object into place: %w", err)
+	}
+
+	return nil
+}
+
 // progressReader wraps an io.Reader to track read progress.
 type progressReader struct {
 	reader   io.Reader

internal/storage/rclone_test.go

@@ -1,28 +1,47 @@
 package storage_test
 
 import (
+	"bytes"
 	"context"
 	"errors"
+	"io"
+	"os"
+	"path/filepath"
+	"strings"
 	"testing"
 
+	"github.com/rclone/rclone/fs"
+	"github.com/rclone/rclone/fs/config/configmap"
 	"sneak.berlin/go/vaultik/internal/storage"
 )
 
-// The rclone backend is a thin adapter over the rclone library: it turns a
-// (remote, path) pair into rclone's "remote:path" string, hands it to
-// rclone, and maps rclone's own results back to the Storer interface. What
-// can be tested in-process, without a configured remote or network, is that
-// adapter layer — how the arguments are shaped and how construction errors
-// are reported. The data-plane operations (Put/Get/List/Delete) are rclone's
-// own, exercised against a real provider (drive, s3-via-rclone, ...), which
-// needs a configured remote with credentials and network access and so is
-// out of reach of a unit test. The shared Storer conformance suite therefore
-// runs against the in-process file and s3 backends; the rclone backend
-// inherits that contract once a remote is configured.
-//
 // These tests use rclone's ":local:" on-the-fly backend, which addresses the
-// local filesystem directly without any configured remote, so construction
-// runs entirely in-process.
+// local filesystem directly without any configured remote, so they run
+// entirely in-process. A remote that needs credentials and network access
+// (drive, s3 via rclone, ...) is out of reach of a unit test.
+
+// newRcloneStorer builds an rclone backend on rclone's local backend,
+// rooted at a fresh temp directory.
+//
+//nolint:ireturn // conformance runs against the Storer interface by design
+func newRcloneStorer(t *testing.T) storage.Storer {
+	t.Helper()
+
+	s, err := storage.NewRcloneStorer(context.Background(), ":local", t.TempDir())
+	if err != nil {
+		t.Fatalf("NewRcloneStorer: %v", err)
+	}
+
+	return s
+}
+
+// TestRcloneStorer runs the shared Storer contract against the rclone
+// backend.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorer(t *testing.T) {
+	runStorerConformance(t, newRcloneStorer)
+}
 
 // TestNewRcloneStorerConstruction checks that a valid remote constructs a
 // backend and that Info() reports the shaped "remote:path" location.
@@ -44,6 +63,321 @@ func TestNewRcloneStorerConstruction(t *testing.T) {
 	}
 }
 
+// unbufferedUploadContext returns a context in which rclone neither reads
+// ahead of the write nor holds a small upload in memory. Without it, a
+// progress callback runs before anything is written to the remote.
+func unbufferedUploadContext() context.Context {
+	ctx, ci := fs.AddConfig(context.Background())
+	ci.BufferSize = 0
+	ci.StreamingUploadCutoff = 0
+
+	return ctx
+}
+
+// objectAtKeyDuringUpload uploads data to testBlobKey and reports whether
+// an object was at the key before the upload finished. It fails the test
+// unless the key then reads back as the uploaded data.
+func objectAtKeyDuringUpload(
+	ctx context.Context, t *testing.T, s *storage.RcloneStorer,
+) bool {
+	t.Helper()
+
+	data := bytes.Repeat([]byte("blob-bytes"), 1000)
+	seen := false
+
+	err := s.PutWithProgress(ctx, testBlobKey, bytes.NewReader(data),
+		int64(len(data)), func(int64) error {
+			_, statErr := s.Stat(ctx, testBlobKey)
+			if statErr == nil {
+				seen = true
+			}
+
+			return nil
+		})
+	if err != nil {
+		t.Fatalf("PutWithProgress: %v", err)
+	}
+
+	got := readObject(ctx, t, s, testBlobKey)
+	if !bytes.Equal(got, data) {
+		t.Errorf("object read back as %d bytes, want the %d uploaded",
+			len(got), len(data))
+	}
+
+	return seen
+}
+
+// readObject returns the contents of the object at key.
+func readObject(
+	ctx context.Context, t *testing.T, s *storage.RcloneStorer, key string,
+) []byte {
+	t.Helper()
+
+	rc, err := s.Get(ctx, key)
+	if err != nil {
+		t.Fatalf("Get: %v", err)
+	}
+
+	defer func() { _ = rc.Close() }()
+
+	got, err := io.ReadAll(rc)
+	if err != nil {
+		t.Fatalf("reading object: %v", err)
+	}
+
+	return got
+}
+
+// TestRcloneStorerObjectAppearsOnlyWhenComplete checks that on a remote
+// with a server-side move, such as local, nothing is at the key until the
+// upload has finished, so a killed upload cannot leave a truncated object
+// there.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorerObjectAppearsOnlyWhenComplete(t *testing.T) {
+	ctx := unbufferedUploadContext()
+
+	s, err := storage.NewRcloneStorer(ctx, ":local", t.TempDir())
+	if err != nil {
+		t.Fatalf("NewRcloneStorer: %v", err)
+	}
+
+	if objectAtKeyDuringUpload(ctx, t, s) {
+		t.Error("object was at its key before the upload finished")
+	}
+}
+
+// TestRcloneStorerListSkipsPartialFiles checks that a temporary file left
+// by a killed upload is never listed as a key.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorerListSkipsPartialFiles(t *testing.T) {
+	dir := t.TempDir()
+	ctx := context.Background()
+
+	s, err := storage.NewRcloneStorer(ctx, ":local", dir)
+	if err != nil {
+		t.Fatalf("NewRcloneStorer: %v", err)
+	}
+
+	realKey := testBlobKey
+
+	err = s.Put(ctx, realKey, strings.NewReader("blob-bytes"))
+	if err != nil {
+		t.Fatalf("Put: %v", err)
+	}
+
+	leftover := filepath.Join(dir, realKey+"-123456.partial")
+
+	err = os.WriteFile(leftover, []byte("half"), 0o600)
+	if err != nil {
+		t.Fatalf("writing leftover temp file: %v", err)
+	}
+
+	keys, err := s.List(ctx, "blobs/")
+	if err != nil {
+		t.Fatalf("List: %v", err)
+	}
+
+	if len(keys) != 1 || keys[0] != realKey {
+		t.Fatalf("List should return only the real key, got %v", keys)
+	}
+
+	var streamed []string
+
+	for obj := range s.ListStream(ctx, "blobs/") {
+		if obj.Err != nil {
+			t.Fatalf("ListStream: %v", obj.Err)
+		}
+
+		streamed = append(streamed, obj.Key)
+	}
+
+	if len(streamed) != 1 || streamed[0] != realKey {
+		t.Fatalf("ListStream should return only the real key, got %v", streamed)
+	}
+}
+
+// TestRcloneStorerDeletePartialUploads checks that a temporary file left
+// by a killed upload is removed and the object at the real key is kept.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorerDeletePartialUploads(t *testing.T) {
+	dir := t.TempDir()
+	ctx := context.Background()
+
+	s, err := storage.NewRcloneStorer(ctx, ":local", dir)
+	if err != nil {
+		t.Fatalf("NewRcloneStorer: %v", err)
+	}
+
+	err = s.Put(ctx, testBlobKey, strings.NewReader("blob-bytes"))
+	if err != nil {
+		t.Fatalf("Put: %v", err)
+	}
+
+	leftover := filepath.Join(dir, testBlobKey+"-123456.partial")
+
+	err = os.WriteFile(leftover, []byte("half"), 0o600)
+	if err != nil {
+		t.Fatalf("writing leftover temp file: %v", err)
+	}
+
+	err = s.DeletePartialUploads(ctx, "blobs/")
+	if err != nil {
+		t.Fatalf("DeletePartialUploads: %v", err)
+	}
+
+	_, err = os.Stat(leftover)
+	if !os.IsNotExist(err) {
+		t.Errorf("leftover temp file was not removed: %v", err)
+	}
+
+	_, err = s.Stat(ctx, testBlobKey)
+	if err != nil {
+		t.Errorf("Stat of the real key: %v", err)
+	}
+}
+
+// newRcloneStorerOnWrappedLocal registers name as rclone's local backend
+// wrapped by wrap, and builds an rclone backend on it rooted at a fresh
+// temp directory. wrap changes the features the local backend reports, so
+// that it behaves like a remote a unit test cannot reach.
+func newRcloneStorerOnWrappedLocal(
+	ctx context.Context, t *testing.T, name string, wrap func(fs.Fs) fs.Fs,
+) *storage.RcloneStorer {
+	t.Helper()
+
+	fs.Register(&fs.RegInfo{
+		Name: name,
+		NewFs: func(
+			ctx context.Context, _, root string, _ configmap.Mapper,
+		) (fs.Fs, error) {
+			local, err := fs.NewFs(ctx, ":local:"+root)
+			if err != nil {
+				return nil, err
+			}
+
+			return wrap(local), nil
+		},
+	})
+
+	s, err := storage.NewRcloneStorer(ctx, ":"+name, t.TempDir())
+	if err != nil {
+		t.Fatalf("NewRcloneStorer: %v", err)
+	}
+
+	return s
+}
+
+// withoutPartialUploads is rclone's local backend with the PartialUploads
+// flag cleared. Like hdfs, it then has a server-side move and shows a file
+// while it is written, without setting that flag.
+type withoutPartialUploads struct {
+	fs.Fs
+}
+
+func (f *withoutPartialUploads) Features() *fs.Features {
+	features := *f.Fs.Features()
+	features.PartialUploads = false
+
+	return &features
+}
+
+// TestRcloneStorerMovesIntoPlaceWithoutPartialUploads checks that on a
+// remote with a server-side move nothing is at the key until the upload has
+// finished, even when rclone does not mark the remote as showing partial
+// uploads.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorerMovesIntoPlaceWithoutPartialUploads(t *testing.T) {
+	ctx := unbufferedUploadContext()
+	s := newRcloneStorerOnWrappedLocal(ctx, t, "withoutpartialuploads",
+		func(local fs.Fs) fs.Fs { return &withoutPartialUploads{Fs: local} })
+
+	if objectAtKeyDuringUpload(ctx, t, s) {
+		t.Error("object was at its key before the upload finished")
+	}
+}
+
+// withoutMove is rclone's local backend reporting no server-side move.
+type withoutMove struct {
+	fs.Fs
+}
+
+func (f *withoutMove) Features() *fs.Features {
+	features := *f.Fs.Features()
+	features.Move = nil
+
+	return &features
+}
+
+// TestRcloneStorerWritesInPlaceWithoutMove checks that on a remote with no
+// server-side move an object is written straight to its key and reads back
+// from there.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorerWritesInPlaceWithoutMove(t *testing.T) {
+	ctx := unbufferedUploadContext()
+	s := newRcloneStorerOnWrappedLocal(ctx, t, "withoutmove",
+		func(local fs.Fs) fs.Fs { return &withoutMove{Fs: local} })
+
+	if !objectAtKeyDuringUpload(ctx, t, s) {
+		t.Error("object was not at its key while it was uploaded")
+	}
+}
+
+var errNameConflict = errors.New("an object with this name already exists")
+
+// moveRefusesExisting is rclone's local backend with a server-side move
+// that, like dropbox's or onedrive's, refuses to move onto an existing
+// object.
+type moveRefusesExisting struct {
+	fs.Fs
+}
+
+func (f *moveRefusesExisting) Features() *fs.Features {
+	features := *f.Fs.Features()
+	features.Move = f.move
+
+	return &features
+}
+
+//nolint:ireturn // the signature is rclone's
+func (f *moveRefusesExisting) move(
+	ctx context.Context, src fs.Object, remote string,
+) (fs.Object, error) {
+	_, err := f.NewObject(ctx, remote)
+	if err == nil {
+		return nil, errNameConflict
+	}
+
+	return f.Fs.Features().Move(ctx, src, remote)
+}
+
+// TestRcloneStorerOverwritesWhereMoveRefusesExisting checks that writing a
+// key twice replaces the object on a remote whose server-side move will not
+// replace an existing object.
+//
+//nolint:paralleltest // NewRcloneStorer installs the process-global rclone config
+func TestRcloneStorerOverwritesWhereMoveRefusesExisting(t *testing.T) {
+	ctx := context.Background()
+	s := newRcloneStorerOnWrappedLocal(ctx, t, "moverefusesexisting",
+		func(local fs.Fs) fs.Fs { return &moveRefusesExisting{Fs: local} })
+
+	for _, content := range []string{"first", "second"} {
+		err := s.Put(ctx, testBlobKey, strings.NewReader(content))
+		if err != nil {
+			t.Fatalf("Put %q: %v", content, err)
+		}
+	}
+
+	got := readObject(ctx, t, s, testBlobKey)
+	if string(got) != "second" {
+		t.Errorf("object = %q, want %q", got, "second")
+	}
+}
+
 // TestNewRcloneStorerUnknownRemote checks that a remote that is not in the
 // rclone config fails construction with the ErrRemoteNotFound sentinel,
 // rather than silently returning a backend pointed nowhere.

internal/storage/s3.go

@@ -99,6 +99,12 @@ func (s *S3Storer) ListStream(ctx context.Context, prefix string) <-chan ObjectI
 	return ch
 }
 
+// DeletePartialUploads has nothing to remove: S3 shows an object only once
+// its upload has completed, so an upload cut off part-way leaves none.
+func (s *S3Storer) DeletePartialUploads(_ context.Context, _ string) error {
+	return nil
+}
+
 // Info returns human-readable storage location information.
 func (s *S3Storer) Info() Info {
 	return Info{

internal/storage/s3_test.go

@@ -1,14 +1,20 @@
 package storage_test
 
 import (
+	"bytes"
 	"context"
 	"errors"
+	"net/http"
 	"net/http/httptest"
+	"slices"
+	"strings"
+	"sync/atomic"
 	"testing"
 
 	"github.com/johannesboyne/gofakes3"
 	"github.com/johannesboyne/gofakes3/backend/s3mem"
 
+	"sneak.berlin/go/vaultik/internal/config"
 	"sneak.berlin/go/vaultik/internal/s3"
 	"sneak.berlin/go/vaultik/internal/storage"
 )
@@ -16,6 +22,13 @@ import (
 // s3TestBucket is the bucket created for each in-process S3 server.
 const s3TestBucket = "test-bucket"
 
+// Credentials for the tests that build a storer from a config.Config. The
+// in-process S3 server accepts any.
+const (
+	s3TestAccessKeyID     = "key"
+	s3TestSecretAccessKey = "secret"
+)
+
 // newS3Storer builds an s3:// backend backed by a fresh in-process
 // S3 server. It reuses the same in-memory S3 harness (gofakes3 + s3mem
 // over httptest) that internal/s3 and the not-found regression test use,
@@ -79,3 +92,193 @@ func TestS3StorerMissingKeyMapsToErrNotFound(t *testing.T) {
 		t.Errorf("Stat on missing key: got %v, want ErrNotFound", err)
 	}
 }
+
+// TestS3URLPrefixKeyLayout pins the bucket keys an s3:// URL reads and
+// writes: the README's remote storage layout, with the prefix joined to
+// each key by one "/". s3://b/p and s3://b/p/ must be the same
+// destination, or a host that writes the URL the other way finds no
+// snapshots. The listed object is put straight into the bucket, as
+// another host would have written it. Both List and ListStream are
+// checked: ListStream is what every snapshot listing goes through.
+func TestS3URLPrefixKeyLayout(t *testing.T) {
+	t.Parallel()
+
+	const (
+		blobKey      = "blobs/aa/bb/aabbccdd"
+		listPrefix   = "metadata/"
+		manifestKey  = listPrefix + "snap/manifest.json.zst"
+		manifestBody = "manifest"
+	)
+
+	cases := []struct {
+		urlPath   string // URL path after the bucket name
+		keyPrefix string // what every key in the bucket must start with
+	}{
+		{urlPath: "/p", keyPrefix: "p/"},
+		{urlPath: "/p/", keyPrefix: "p/"},
+		{urlPath: "", keyPrefix: ""},
+	}
+
+	for _, tc := range cases {
+		storageURL := "s3://" + s3TestBucket + tc.urlPath
+
+		t.Run(storageURL, func(t *testing.T) {
+			t.Parallel()
+
+			backend := s3mem.New()
+
+			err := backend.CreateBucket(s3TestBucket)
+			if err != nil {
+				t.Fatalf("create bucket: %v", err)
+			}
+
+			srv := httptest.NewServer(gofakes3.New(backend).Server())
+			t.Cleanup(srv.Close)
+
+			storer, err := storage.NewStorer(&config.Config{
+				StorageURL: storageURL + "?endpoint=" + srv.URL,
+				S3: config.S3Config{
+					AccessKeyID:     s3TestAccessKeyID,
+					SecretAccessKey: s3TestSecretAccessKey,
+				},
+			})
+			if err != nil {
+				t.Fatalf("NewStorer: %v", err)
+			}
+
+			ctx := context.Background()
+
+			err = storer.Put(ctx, blobKey, strings.NewReader("blob"))
+			if err != nil {
+				t.Fatalf("Put: %v", err)
+			}
+
+			_, err = backend.HeadObject(s3TestBucket, tc.keyPrefix+blobKey)
+			if err != nil {
+				t.Errorf("blob not stored at %q: %v", tc.keyPrefix+blobKey, err)
+			}
+
+			_, err = backend.PutObject(s3TestBucket, tc.keyPrefix+manifestKey,
+				nil, strings.NewReader(manifestBody), int64(len(manifestBody)))
+			if err != nil {
+				t.Fatalf("seed manifest: %v", err)
+			}
+
+			keys, err := storer.List(ctx, listPrefix)
+			if err != nil {
+				t.Fatalf("List: %v", err)
+			}
+
+			if !slices.Equal(keys, []string{manifestKey}) {
+				t.Errorf("List(%q) = %q, want [%q]", listPrefix, keys, manifestKey)
+			}
+
+			streamed := listStreamKeys(t, storer, listPrefix)
+			if !slices.Equal(streamed, []string{manifestKey}) {
+				t.Errorf("ListStream(%q) = %q, want [%q]", listPrefix, streamed, manifestKey)
+			}
+		})
+	}
+}
+
+// TestS3UploadUsesConfiguredPartSize checks that s3.part_size reaches the
+// multipart uploader, through storage_url and through the s3.* fields. An
+// object three parts long must arrive as three parts; at the SDK's default
+// of 5 MiB it would arrive as four.
+func TestS3UploadUsesConfiguredPartSize(t *testing.T) {
+	t.Parallel()
+
+	const (
+		partSize  = 6 * 1024 * 1024
+		wantParts = 3
+	)
+
+	backend := s3mem.New()
+
+	err := backend.CreateBucket(s3TestBucket)
+	if err != nil {
+		t.Fatalf("create bucket: %v", err)
+	}
+
+	// Every part of a multipart upload is one request with a partNumber.
+	var parts atomic.Int32
+
+	fake := gofakes3.New(backend).Server()
+	srv := httptest.NewServer(http.HandlerFunc(
+		func(w http.ResponseWriter, r *http.Request) {
+			if r.URL.Query().Has("partNumber") {
+				parts.Add(1)
+			}
+
+			fake.ServeHTTP(w, r)
+		}))
+	t.Cleanup(srv.Close)
+
+	cases := []struct {
+		name string
+		cfg  *config.Config
+	}{
+		{
+			name: "storage_url",
+			cfg: &config.Config{
+				StorageURL: "s3://" + s3TestBucket + "?endpoint=" + srv.URL,
+				S3: config.S3Config{
+					AccessKeyID:     s3TestAccessKeyID,
+					SecretAccessKey: s3TestSecretAccessKey,
+					PartSize:        partSize,
+				},
+			},
+		},
+		{
+			name: "s3.endpoint",
+			cfg: &config.Config{
+				S3: config.S3Config{
+					Endpoint:        srv.URL,
+					Bucket:          s3TestBucket,
+					AccessKeyID:     s3TestAccessKeyID,
+					SecretAccessKey: s3TestSecretAccessKey,
+					PartSize:        partSize,
+				},
+			},
+		},
+	}
+
+	for _, tc := range cases {
+		parts.Store(0)
+
+		storer, err := storage.NewStorer(tc.cfg)
+		if err != nil {
+			t.Fatalf("%s: NewStorer: %v", tc.name, err)
+		}
+
+		data := bytes.NewReader(make([]byte, wantParts*partSize))
+
+		err = storer.PutWithProgress(
+			context.Background(), "blob", data, data.Size(), nil)
+		if err != nil {
+			t.Fatalf("%s: PutWithProgress: %v", tc.name, err)
+		}
+
+		if got := parts.Load(); got != wantParts {
+			t.Errorf("%s: uploaded in %d parts, want %d", tc.name, got, wantParts)
+		}
+	}
+}
+
+// listStreamKeys returns the keys ListStream yields under a prefix, and
+// fails the test on a listing error.
+func listStreamKeys(t *testing.T, s storage.Storer, prefix string) []string {
+	t.Helper()
+
+	var keys []string
+
+	for obj := range s.ListStream(context.Background(), prefix) {
+		if obj.Err != nil {
+			t.Fatalf("ListStream %q: %v", prefix, obj.Err)
+		}
+
+		keys = append(keys, obj.Key)
+	}
+
+	return keys
+}

internal/storage/storer.go

@@ -41,7 +41,8 @@ type Info struct {
 // directory for filesystem).
 type Storer interface {
 	// Put stores data at the specified key.
-	// Parent directories are created automatically for filesystem backends.
+	// The filesystem backend fails when its destination directory does
+	// not exist, and creates the directories below it as needed.
 	Put(ctx context.Context, key string, data io.Reader) error
 
 	// PutWithProgress stores data with progress reporting.
@@ -71,6 +72,12 @@ type Storer interface {
 	// If an error occurs during listing, the final item will have Err set.
 	ListStream(ctx context.Context, prefix string) <-chan ObjectInfo
 
+	// DeletePartialUploads removes every object under prefix that an
+	// upload cut off part-way left under a temporary name ending in
+	// `.partial`. The file and rclone backends' List and ListStream skip
+	// such an object.
+	DeletePartialUploads(ctx context.Context, prefix string) error
+
 	// Info returns human-readable storage location information.
 	Info() Info
 }

internal/storage/url.go

@@ -17,8 +17,10 @@ const (
 
 // Sentinel errors for storage URL parsing.
 var (
-	ErrEmptyStorageURL   = errors.New("storage URL is empty")
-	ErrEmptyFilePath     = errors.New("file URL path is empty")
+	ErrEmptyStorageURL  = errors.New("storage URL is empty")
+	ErrEmptyFilePath    = errors.New("file URL path is empty")
+	ErrRelativeFilePath = errors.New(
+		"file URL needs an absolute path, as in file:///path/to/backup")
 	ErrMissingBucket     = errors.New("s3 URL missing bucket name")
 	ErrMissingRemote     = errors.New("rclone URL missing remote name")
 	ErrUnsupportedScheme = errors.New(
@@ -51,17 +53,8 @@ func ParseStorageURL(rawURL string) (*URL, error) {
 		return nil, ErrEmptyStorageURL
 	}
 
-	// Handle file:// URLs
 	if after, ok := strings.CutPrefix(rawURL, "file://"); ok {
-		path := after
-		if path == "" {
-			return nil, ErrEmptyFilePath
-		}
-
-		return &URL{
-			Scheme: schemeFile,
-			Prefix: path,
-		}, nil
+		return parseFileURL(after)
 	}
 
 	if strings.HasPrefix(rawURL, "s3://") {
@@ -75,6 +68,27 @@ func ParseStorageURL(rawURL string) (*URL, error) {
 	return nil, ErrUnsupportedScheme
 }
 
+// parseFileURL parses the path that follows file://. The path must be
+// absolute: a relative one would resolve against the working directory,
+// so the destination would move with it. Percent-escapes are decoded, so
+// my%20stick names the directory "my stick"; a literal space is kept.
+func parseFileURL(rawPath string) (*URL, error) {
+	if rawPath == "" {
+		return nil, ErrEmptyFilePath
+	}
+
+	if !strings.HasPrefix(rawPath, "/") {
+		return nil, ErrRelativeFilePath
+	}
+
+	path, err := url.PathUnescape(rawPath)
+	if err != nil {
+		return nil, fmt.Errorf("invalid file URL path: %w", err)
+	}
+
+	return &URL{Scheme: schemeFile, Prefix: path}, nil
+}
+
 // parseS3URL parses an s3://bucket/prefix URL. It rejects credentials in
 // the userinfo and any query parameter other than endpoint, region and
 // ssl, so a credential-bearing URL is never stored or echoed.
@@ -161,8 +175,7 @@ func rejectUnknownParams(query url.Values, allowed ...string) error {
 // *url.Error that url.Parse returns embeds the raw URL in its message, so
 // wrapping it directly would echo a credential-bearing URL into logs.
 func wrapParseError(err error) error {
-	var uerr *url.Error
-	if errors.As(err, &uerr) {
+	if uerr, ok := errors.AsType[*url.Error](err); ok {
 		return fmt.Errorf("invalid URL: %w", uerr.Err)
 	}
 

internal/storage/url_parse_test.go

@@ -14,7 +14,10 @@ import (
 func TestParseStorageURLValid(t *testing.T) {
 	t.Parallel()
 
-	const bucket = "mybucket"
+	const (
+		bucket     = "mybucket"
+		fileScheme = "file"
+	)
 
 	cases := []struct {
 		name string
@@ -24,7 +27,17 @@ func TestParseStorageURLValid(t *testing.T) {
 		{
 			name: "file absolute path",
 			raw:  "file:///var/backups/vaultik",
-			want: &storage.URL{Scheme: "file", Prefix: "/var/backups/vaultik"},
+			want: &storage.URL{Scheme: fileScheme, Prefix: "/var/backups/vaultik"},
+		},
+		{
+			name: "file percent-escaped path is decoded",
+			raw:  "file:///Volumes/my%20stick/backup",
+			want: &storage.URL{Scheme: fileScheme, Prefix: "/Volumes/my stick/backup"},
+		},
+		{
+			name: "file path with a literal space",
+			raw:  "file:///Volumes/my stick/backup",
+			want: &storage.URL{Scheme: fileScheme, Prefix: "/Volumes/my stick/backup"},
 		},
 		{
 			name: "s3 bucket and prefix, ssl defaults on",
@@ -90,6 +103,7 @@ func TestParseStorageURLErrors(t *testing.T) {
 	}{
 		{"empty url", "", storage.ErrEmptyStorageURL},
 		{"file empty path", "file://", storage.ErrEmptyFilePath},
+		{"file relative path", "file://dest", storage.ErrRelativeFilePath},
 		{"s3 missing bucket", "s3://", storage.ErrMissingBucket},
 		{"s3 missing bucket with path", "s3:///justprefix", storage.ErrMissingBucket},
 		{"rclone missing remote", "rclone://", storage.ErrMissingRemote},

internal/types/types.go

@@ -155,8 +155,8 @@ type BlobHash string
 // FilePath represents an absolute path to a file or directory.
 type FilePath string
 
-// SourcePath represents the root directory from which files are backed up.
-// Used during restore to strip the source prefix from paths.
+// SourcePath is the source directory a scan found a file under, made
+// absolute and with symlinks resolved.
 type SourcePath string
 
 // Hostname identifies a host machine.

internal/vaultik/changed_file_restore_test.go

@@ -130,15 +130,14 @@ func assertThirdSnapshotRestores(
 // up, and that snapshot is removed. The first snapshot keeps the file row,
 // which now lists the appended content's chunks, while removal drops the
 // blob that held them.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestBackupAfterRemovingNewestSnapshotRestoresChangedFile(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 	changedPath := filepath.Join(dataDir, "appended.bin")
@@ -178,15 +177,14 @@ func TestBackupAfterRemovingNewestSnapshotRestoresChangedFile(t *testing.T) {
 // The next run's prune drops that incomplete snapshot and its blob, while
 // the first snapshot keeps the file row, which now lists the appended
 // content's chunks.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestBackupAfterInterruptedRunRestoresChangedFile(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 	changedPath := filepath.Join(dataDir, "appended.bin")

internal/vaultik/deep_verify_test.go

@@ -30,7 +30,7 @@ func TestDeepVerifyAcceptsHealthyAndRejectsCorruptBlob(t *testing.T) {
 	tempDir := t.TempDir()
 
 	dataDir := filepath.Join(tempDir, "source")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
 	chunkSize := int64(64 * 1024)

internal/vaultik/destination_marker.go

@@ -0,0 +1,74 @@
+package vaultik
+
+import (
+	"errors"
+	"fmt"
+	"strings"
+
+	"sneak.berlin/go/vaultik/internal/storage"
+)
+
+// destinationMarkerKey is the object every backup writes at the root of
+// the backup destination store. While the local index holds a snapshot,
+// a destination without it is treated as not present: an unplugged
+// volume leaves an empty directory at its mount point, which would
+// otherwise read as a store whose snapshots are all gone.
+const destinationMarkerKey = "vaultik-destination.txt"
+
+// destinationMarkerText is the whole content of the marker. It names no
+// host, path or time.
+const destinationMarkerText = "This is a vaultik backup destination store.\n"
+
+// errDestinationNotPresent is returned when the local index holds a
+// snapshot and the backup destination store has no marker.
+var errDestinationNotPresent = errors.New("backup destination store is not present")
+
+// checkDestinationMarker returns errDestinationNotPresent when the local
+// index holds a snapshot and the backup destination store has no marker.
+// With no snapshot in the local index, as on a first backup or on
+// another machine, there is nothing to check.
+func (v *Vaultik) checkDestinationMarker() error {
+	ids, err := v.localSnapshotIDs()
+	if err != nil {
+		return fmt.Errorf("listing local snapshots: %w", err)
+	}
+
+	if len(ids) == 0 {
+		return nil
+	}
+
+	_, err = v.Storage.Stat(v.ctx, destinationMarkerKey)
+	if errors.Is(err, storage.ErrNotFound) {
+		return fmt.Errorf("%w: %s has no %s, but the local index holds "+
+			"snapshots stored there; mount the volume if it is removable, "+
+			"or if the destination was emptied on purpose, run "+
+			"'vaultik database delete' and back up again",
+			errDestinationNotPresent, v.Storage.Info().Location,
+			destinationMarkerKey)
+	}
+
+	if err != nil {
+		return fmt.Errorf("checking for %s: %w", destinationMarkerKey, err)
+	}
+
+	return nil
+}
+
+// markDestination checks the backup destination store with
+// checkDestinationMarker and then writes the marker, so a first backup
+// marks its destination and a later one writes the same text again.
+func (v *Vaultik) markDestination() error {
+	err := v.checkDestinationMarker()
+	if err != nil {
+		return err
+	}
+
+	err = v.Storage.Put(v.ctx, destinationMarkerKey,
+		strings.NewReader(destinationMarkerText))
+	if err != nil {
+		return fmt.Errorf("writing %s to the backup destination store: %w",
+			destinationMarkerKey, err)
+	}
+
+	return nil
+}

internal/vaultik/destination_marker_test.go

@@ -0,0 +1,184 @@
+package vaultik_test
+
+import (
+	"bytes"
+	"context"
+	"os"
+	"path/filepath"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+	"sneak.berlin/go/vaultik/internal/database"
+	"sneak.berlin/go/vaultik/internal/log"
+	"sneak.berlin/go/vaultik/internal/vaultik"
+)
+
+// These tests cover https://git.eeqj.de/sneak/vaultik/issues/239: a
+// file:// destination at a volume's mount point leaves an empty directory
+// behind when the volume is unplugged. While the local index holds
+// snapshots, a destination without vaultik-destination.txt is not present,
+// so no command may write to it or conclude from it that the local
+// snapshots are gone.
+
+// markerFile is the name of the file a backup writes at the root of the
+// destination.
+const markerFile = "vaultik-destination.txt"
+
+// backUpThenUnplugMountPoint backs up to a file:// destination, then
+// moves the destination directory away and leaves an empty directory in
+// its place, as unplugging a volume mounted there would. It returns the
+// path of that empty directory.
+func backUpThenUnplugMountPoint(
+	ctx context.Context, t *testing.T,
+) (*vaultik.Vaultik, *database.Repositories, *bytes.Buffer, string) {
+	t.Helper()
+
+	storeDir := filepath.Join(t.TempDir(), "mnt")
+	v, repos, out := backUpToFileDestination(ctx, t, storeDir)
+
+	require.NoError(t, os.Rename(storeDir, storeDir+"-unplugged"))
+	require.NoError(t, os.Mkdir(storeDir, 0o750))
+
+	return v, repos, out, storeDir
+}
+
+// assertUntouched checks that the local index still holds its one
+// snapshot and that nothing was written to the empty mount point.
+func assertUntouched(
+	ctx context.Context, t *testing.T,
+	repos *database.Repositories, storeDir string,
+) {
+	t.Helper()
+
+	snapshots, err := repos.Snapshots.ListRecent(ctx, listRecentTestLimit)
+	require.NoError(t, err)
+	assert.Len(t, snapshots, 1, "no local snapshot record may be deleted")
+
+	entries, err := os.ReadDir(storeDir)
+	require.NoError(t, err)
+	assert.Empty(t, entries, "nothing may be written to the empty mount point")
+}
+
+// TestFirstBackupWritesMarker checks that a backup writes the marker
+// file at the root of the destination.
+func TestFirstBackupWritesMarker(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	storeDir := t.TempDir()
+	backUpToFileDestination(context.Background(), t, storeDir)
+
+	assert.FileExists(t, filepath.Join(storeDir, markerFile))
+}
+
+// TestBackupRefusesDestinationWithoutMarker checks that snapshot create
+// --prune writes nothing and drops no local snapshot record when the
+// destination has no marker.
+func TestBackupRefusesDestinationWithoutMarker(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	v, repos, _, storeDir := backUpThenUnplugMountPoint(ctx, t)
+
+	err := v.CreateSnapshot(&vaultik.SnapshotCreateOptions{
+		Cron:  true,
+		Prune: true,
+	})
+	require.ErrorContains(t, err, markerFile)
+
+	assertUntouched(ctx, t, repos, storeDir)
+}
+
+// TestPruneRefusesDestinationWithoutMarker checks that prune fails and
+// deletes no local snapshot record when the destination has no marker.
+func TestPruneRefusesDestinationWithoutMarker(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	v, repos, _, storeDir := backUpThenUnplugMountPoint(ctx, t)
+
+	err := v.Prune(&vaultik.PruneOptions{Force: true})
+	require.ErrorContains(t, err, markerFile)
+
+	assertUntouched(ctx, t, repos, storeDir)
+}
+
+// TestPurgeRefusesDestinationWithoutMarker checks that snapshot purge
+// fails and deletes no local snapshot record when the destination has no
+// marker.
+func TestPurgeRefusesDestinationWithoutMarker(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	v, repos, _, storeDir := backUpThenUnplugMountPoint(ctx, t)
+
+	err := v.PurgeSnapshotsWithOptions(&vaultik.SnapshotPurgeOptions{
+		KeepLatest: true,
+		Force:      true,
+	})
+	require.ErrorContains(t, err, markerFile)
+
+	assertUntouched(ctx, t, repos, storeDir)
+}
+
+// TestRemoveSnapshotWarnsWhenDestinationHasNoMarker checks that snapshot
+// remove warns that the metadata could not be removed from a destination
+// without a marker, instead of reporting that it was.
+func TestRemoveSnapshotWarnsWhenDestinationHasNoMarker(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	v, repos, out, _ := backUpThenUnplugMountPoint(ctx, t)
+
+	result, err := v.RemoveSnapshot(localSnapshotID(ctx, t, repos, "first"),
+		&vaultik.RemoveOptions{Force: true})
+	require.NoError(t, err)
+
+	assert.False(t, result.RemoteRemoved)
+	assert.Contains(t, out.String(),
+		"Could not remove snapshot metadata from remote")
+	assert.Contains(t, out.String(), markerFile)
+	assert.NotContains(t, out.String(),
+		"Removed snapshot metadata from remote storage")
+}
+
+// TestListSnapshotsWarnsWhenDestinationHasNoMarker checks that snapshot
+// list warns and shows the local index alone when the destination has no
+// marker, without reporting the local snapshot as missing from it.
+func TestListSnapshotsWarnsWhenDestinationHasNoMarker(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	v, repos, out, _ := backUpThenUnplugMountPoint(ctx, t)
+	id := localSnapshotID(ctx, t, repos, "first")
+
+	require.NoError(t, v.ListSnapshots(false))
+
+	assert.Contains(t, out.String(), "Could not list backup destination store")
+	assert.Contains(t, out.String(), markerFile)
+	assert.Contains(t, out.String(), id)
+	assert.NotContains(t, out.String(), "not found in backup destination store")
+}
+
+// TestBackupAfterNukeRemoteSucceeds checks that remote nuke leaves the
+// destination ready for a new first backup, which writes the marker
+// again.
+func TestBackupAfterNukeRemoteSucceeds(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	storeDir := t.TempDir()
+	v, _, _ := backUpToFileDestination(context.Background(), t, storeDir)
+
+	require.NoError(t, v.NukeRemote(true))
+	assert.NoFileExists(t, filepath.Join(storeDir, markerFile))
+
+	require.NoError(t, backUp(v, "second"))
+	assert.FileExists(t, filepath.Join(storeDir, markerFile))
+}

internal/vaultik/destination_validation_test.go

@@ -257,6 +257,10 @@ func (s *stubLister) List(_ context.Context, _ string) ([]string, error) {
 	return nil, errStubUnused
 }
 
+func (s *stubLister) DeletePartialUploads(_ context.Context, _ string) error {
+	return errStubUnused
+}
+
 func (s *stubLister) Info() storage.Info {
 	return storage.Info{}
 }

internal/vaultik/fault_injection_test.go

@@ -38,11 +38,9 @@ import (
 // (https://git.eeqj.de/sneak/vaultik/issues/130) and is not re-tested
 // here; these tests target the layers above the backend.
 //
-// The tests run serially, not with t.Parallel: each calls
-// log.Initialize, which replaces the package-global logger, and a
-// backup or restore running concurrently reads that same logger. Under
-// -race the two collide. Running one at a time is the same choice
-// prune_count_test.go already makes for the same reason.
+// log.Initialize replaces the package-global logger that a running
+// backup or restore reads, so each test calls it before t.Parallel,
+// while no parallel test is running yet.
 
 const (
 	faultChunkSize   = int64(64 * 1024)
@@ -165,17 +163,19 @@ func newReaderVaultik(
 // Scenario 3: a stored blob's bytes are flipped before restore reads
 // them. Restore must fail loudly, and no file must be left on the
 // restore target holding corrupt content.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestRestoreRejectsCorruptBlob(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
 	assertRestoreRejectsDamagedBlob(t, faultstore.GetCorrupt, "corrupt")
 }
 
 // Scenario 4: a stored blob is truncated before restore reads it. Same
 // contract as the corrupt case.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestRestoreRejectsTruncatedBlob(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
 	assertRestoreRejectsDamagedBlob(t, faultstore.GetTruncate, "truncated")
 }
 
@@ -188,12 +188,11 @@ func assertRestoreRejectsDamagedBlob(
 	t *testing.T, fault faultstore.GetFault, name string,
 ) {
 	t.Helper()
-	log.Initialize(log.Config{})
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
@@ -232,15 +231,14 @@ func assertRestoreRejectsDamagedBlob(
 
 // Scenario 6: the backend accepts blob uploads and reports success but
 // stores nothing. verify --deep must catch it.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestDeepVerifyCatchesLyingBackend(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
 	ctx := context.Background()
@@ -285,15 +283,14 @@ func TestDeepVerifyCatchesLyingBackend(t *testing.T) {
 // Scenario 1a: a blob upload fails partway through. The interrupted run
 // must not record the blob as uploaded, must not reference it from the
 // snapshot, and must leave no blob object at the destination.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestInterruptedBlobUploadRecordsNoUploadedBlob(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
 	ctx := context.Background()
@@ -301,10 +298,6 @@ func TestInterruptedBlobUploadRecordsNoUploadedBlob(t *testing.T) {
 
 	writeFaultSourceTree(t, fs, dataDir)
 
-	// No upload succeeds, so nothing creates the destination directory.
-	// It must exist for the listing below to show that no blob survived.
-	require.NoError(t, os.Mkdir(storeDir, 0o750))
-
 	inner, err := storage.NewFileStorer(storeDir)
 	require.NoError(t, err)
 
@@ -361,15 +354,14 @@ func TestInterruptedBlobUploadRecordsNoUploadedBlob(t *testing.T) {
 // chunks in a blob that was actually uploaded, so the retry re-chunks and
 // re-uploads the affected data instead of silently referencing data that
 // never reached storage.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestBackupRetryAfterInterruptedUploadIsRestorable(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
@@ -426,15 +418,14 @@ func TestBackupRetryAfterInterruptedUploadIsRestorable(t *testing.T) {
 // covered by TestBackupCompletesOnlyAfterMetadataExport
 // (https://git.eeqj.de/sneak/vaultik/issues/177); this test exercises the
 // lower-level export path in isolation.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestBackupSurvivesMetadataExportInterruption(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
 	ctx := context.Background()
@@ -509,15 +500,14 @@ func TestBackupSurvivesMetadataExportInterruption(t *testing.T) {
 // destination. Rerunning the backup must then prune the incomplete
 // snapshot, produce a snapshot whose destination metadata and local index
 // agree, and restore. See https://git.eeqj.de/sneak/vaultik/issues/177.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestBackupCompletesOnlyAfterMetadataExport(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	fs := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
@@ -685,15 +675,14 @@ func faultScannerFactory(
 // Scenario 5: the restore target runs out of space mid-file. Restore
 // must fail with an out-of-space error, and must not leave a truncated
 // file at the target path presenting as a complete restore.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestRestoreReportsDiskFull(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	osFS := afero.NewOsFs()
 	tempDir := t.TempDir()
 	dataDir := filepath.Join(tempDir, "src")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 

internal/vaultik/helpers.go

@@ -3,12 +3,14 @@ package vaultik
 import (
 	"errors"
 	"fmt"
+	"math"
 	"regexp"
 	"strconv"
 	"strings"
 	"time"
 
 	"github.com/dustin/go-humanize"
+	"sneak.berlin/go/vaultik/internal/snapshot"
 	"sneak.berlin/go/vaultik/internal/types"
 )
 
@@ -46,12 +48,13 @@ const (
 	year  = 365 * day
 )
 
-// Snapshot IDs split on "_" into hostname, optional name parts, and a
-// trailing timestamp.
-const (
-	minSnapshotIDParts     = 2
-	minSnapshotIDNameParts = 3
-)
+// maxDuration is the largest value a time.Duration can hold, about 292
+// years.
+const maxDuration = time.Duration(math.MaxInt64)
+
+// A snapshot ID split on "_" has at least a hostname and a trailing
+// timestamp.
+const minSnapshotIDParts = 2
 
 // SnapshotInfo contains information about a snapshot.
 //
@@ -121,29 +124,36 @@ func parseSnapshotTimestamp(snapshotID string) (time.Time, error) {
 	return timestamp.UTC(), nil
 }
 
-// parseSnapshotName extracts the snapshot name from a snapshot ID.
-// Format: hostname_snapshotname_timestamp — the middle part(s) between hostname
-// and the RFC3339 timestamp are the snapshot name (may contain underscores).
-// Returns the snapshot name, or empty string if the ID is malformed.
-func parseSnapshotName(snapshotID string) string {
-	parts := strings.Split(snapshotID, "_")
-	if len(parts) < minSnapshotIDNameParts {
-		// Format: hostname_timestamp — no snapshot name
+// parseSnapshotName extracts the snapshot name from a snapshot ID of the
+// form hostname_name_timestamp, given the hostname stored with that
+// snapshot. The hostname and the name may both contain underscores, so the
+// name is what is left after removing the short hostname and its "_" from
+// the front and the last "_" and the timestamp from the end. Returns "" for
+// an ID with no name (hostname_timestamp), and for an ID that does not start
+// with that hostname, which CreateSnapshotWithName never writes.
+func parseSnapshotName(snapshotID, hostname string) string {
+	prefix := snapshot.ShortHostname(hostname) + "_"
+
+	rest, ok := strings.CutPrefix(snapshotID, prefix)
+	if !ok {
 		return ""
 	}
-	// Format: hostname_name_timestamp — middle parts are the name.
-	// The last part is the RFC3339 timestamp, the first part is the hostname,
-	// everything in between is the snapshot name (which may itself contain underscores).
-	return strings.Join(parts[1:len(parts)-1], "_")
+
+	end := strings.LastIndex(rest, "_")
+	if end < 0 {
+		return ""
+	}
+
+	return rest[:end]
 }
 
 // parseDuration parses a duration string with support for human-friendly units:
 // d/day/days, w/week/weeks, mo/month/months, y/year/years, plus standard Go
 // duration units. Following Go, m is minutes and mo is months. A bare number,
-// an unknown unit, and a negative value are all rejected. Outside the Go
-// units the input must be whole numbers each followed directly by a unit
-// (2w3d), so 1.0y and 30 days are errors; decimals work only in Go units
-// (1.5h).
+// an unknown unit, a negative value, and a total longer than maxDuration are
+// all rejected. Outside the Go units the input must be whole numbers each
+// followed directly by a unit (2w3d), so 1.0y and 30 days are errors;
+// decimals work only in Go units (1.5h).
 func parseDuration(s string) (time.Duration, error) {
 	if strings.HasPrefix(strings.TrimSpace(s), "-") {
 		return 0, errNegativeDuration
@@ -176,19 +186,30 @@ func parseDuration(s string) (time.Duration, error) {
 			return 0, fmt.Errorf("invalid number %q: %w", match[1], err)
 		}
 
+		var unitLength time.Duration
+
 		unit := strings.ToLower(match[2])
 		switch unit {
 		case "d", "day", "days":
-			total += time.Duration(n) * day
+			unitLength = day
 		case "w", "week", "weeks":
-			total += time.Duration(n) * week
+			unitLength = week
 		case "mo", "month", "months":
-			total += time.Duration(n) * month
+			unitLength = month
 		case "y", "year", "years":
-			total += time.Duration(n) * year
+			unitLength = year
 		default:
 			return 0, fmt.Errorf("%w %q", errUnknownTimeUnit, unit)
 		}
+
+		// Past maxDuration the sum wraps to a negative value, which would
+		// put the purge cutoff in the future.
+		if time.Duration(n) > (maxDuration-total)/unitLength {
+			return 0, fmt.Errorf("%w: %q is longer than about 292 years",
+				errInvalidDuration, s)
+		}
+
+		total += time.Duration(n) * unitLength
 	}
 
 	return total, nil

internal/vaultik/helpers_test.go

@@ -11,33 +11,55 @@ func TestParseSnapshotName(t *testing.T) {
 	tests := []struct {
 		name       string
 		snapshotID string
+		hostname   string
 		want       string
 	}{
 		{
 			name:       "standard format with name",
 			snapshotID: "myhost_home_2026-01-12T14:41:15Z",
+			hostname:   "myhost",
 			want:       "home",
 		},
 		{
 			name:       "standard format with different name",
 			snapshotID: "server1_system_2026-02-15T09:30:00Z",
+			hostname:   "server1",
 			want:       "system",
 		},
 		{
 			name:       "name with underscores",
 			snapshotID: "myhost_my_special_backup_2026-03-01T00:00:00Z",
+			hostname:   "myhost",
 			want:       "my_special_backup",
 		},
+		{
+			name:       "hostname with underscores",
+			snapshotID: "my_host_docs_2026-03-01T00:00:00Z",
+			hostname:   "my_host",
+			want:       "docs",
+		},
+		{
+			name:       "stored hostname with domain",
+			snapshotID: "my_host_mail_2026-03-01T00:00:00Z",
+			hostname:   "my_host.example.com",
+			want:       "mail",
+		},
+		{
+			name:       "no name",
+			snapshotID: "my_host_2026-03-01T00:00:00Z",
+			hostname:   "my_host",
+			want:       "",
+		},
 	}
 
 	for _, tt := range tests {
 		t.Run(tt.name, func(t *testing.T) {
 			t.Parallel()
 
-			got := parseSnapshotName(tt.snapshotID)
+			got := parseSnapshotName(tt.snapshotID, tt.hostname)
 			if got != tt.want {
-				t.Errorf("parseSnapshotName(%q) = %q, want %q",
-					tt.snapshotID, got, tt.want)
+				t.Errorf("parseSnapshotName(%q, %q) = %q, want %q",
+					tt.snapshotID, tt.hostname, got, tt.want)
 			}
 		})
 	}
@@ -89,6 +111,17 @@ func TestParseDuration(t *testing.T) {
 		{"30 days", 0, true},
 		{"30 days ago", 0, true},
 		{"x7d", 0, true},
+		// The largest time.Duration is about 292 years. A larger value
+		// must be rejected, not wrapped to a negative one, which would
+		// put the cutoff in the future and select every snapshot.
+		{"292y", 292 * 365 * 24 * time.Hour, false},
+		{"293y", 0, true},
+		{"3559mo", 0, true},
+		{"15251w", 0, true},
+		{"106752d", 0, true},
+		{"2562048h", 0, true},
+		{"200y200y", 0, true},
+		{"292y6mo", 0, true},
 	}
 
 	for _, tt := range tests {

internal/vaultik/info.go

@@ -167,10 +167,6 @@ const (
 	// metadataKeyParts is the minimum "/"-separated segment count of a
 	// metadata object key (metadata/<snapshot-id>/<filename>).
 	metadataKeyParts = 3
-
-	// blobKeyParts is the minimum "/"-separated segment count of a blob
-	// object key (blobs/<aa>/<bb>/<hash>).
-	blobKeyParts = 4
 )
 
 // SnapshotMetadataInfo contains information about a single snapshot's metadata
@@ -181,8 +177,16 @@ type SnapshotMetadataInfo struct {
 	ManifestSize int64  `json:"manifest_size"`
 	DatabaseSize int64  `json:"database_size"`
 	TotalSize    int64  `json:"total_size"`
-	BlobCount    int    `json:"blob_count"`
-	BlobsSize    int64  `json:"blobs_size"`
+
+	// Both stay nil (null in the JSON) when the snapshot's manifest was
+	// listed but could not be read.
+	BlobCount *int   `json:"blob_count"`
+	BlobsSize *int64 `json:"blobs_size"`
+
+	// Set when the listing holds this snapshot's manifest.json.zst. A
+	// backup interrupted before its manifest upload leaves a directory
+	// without one, which prune does not treat as a snapshot.
+	hasManifest bool
 }
 
 // RemoteInfoResult contains all remote storage information
@@ -206,9 +210,20 @@ type RemoteInfoResult struct {
 	ReferencedBlobCount int   `json:"referenced_blob_count"`
 	ReferencedBlobSize  int64 `json:"referenced_blob_size"`
 
-	// Orphaned blobs
-	OrphanedBlobCount int   `json:"orphaned_blob_count"`
-	OrphanedBlobSize  int64 `json:"orphaned_blob_size"`
+	// Orphaned blobs. Both stay nil (null in the JSON) when a manifest
+	// was listed but not read, since that snapshot's blobs would be
+	// counted as orphaned.
+	OrphanedBlobCount *int   `json:"orphaned_blob_count"`
+	OrphanedBlobSize  *int64 `json:"orphaned_blob_size"`
+
+	// Remote key of each snapshot whose manifest could not be read
+	UnreadableManifests []string `json:"unreadable_manifests,omitempty"`
+
+	// Number of manifests not read because the name above them under
+	// metadata/ is not a remote key. The names themselves are not
+	// reported: they come from the destination store and may hold
+	// control characters.
+	SkippedManifestCount int `json:"skipped_manifest_count,omitempty"`
 }
 
 // RemoteInfo displays information about remote storage
@@ -234,16 +249,28 @@ func (v *Vaultik) RemoteInfo(jsonOutput bool) error {
 		v.stdoutf("Scanning snapshot metadata...\n")
 	}
 
-	snapshotMetadata, snapshotIDs, err := v.collectSnapshotMetadata()
+	snapshotMetadata, snapshotIDs, skippedManifestCount, err := v.collectSnapshotMetadata()
 	if err != nil {
 		return err
 	}
 
+	result.SkippedManifestCount = skippedManifestCount
+
 	if showText {
-		v.stdoutf("Downloading %d manifest(s)...\n", len(snapshotIDs))
+		manifestCount := 0
+
+		for _, info := range snapshotMetadata {
+			if info.hasManifest {
+				manifestCount++
+			}
+		}
+
+		v.stdoutf("Downloading %d manifest(s)...\n", manifestCount)
 	}
 
-	referencedBlobs := v.collectReferencedBlobsFromManifests(snapshotIDs, snapshotMetadata)
+	referencedBlobs, unreadableManifests := v.collectReferencedBlobsFromManifests(
+		snapshotIDs, snapshotMetadata)
+	result.UnreadableManifests = unreadableManifests
 
 	v.populateRemoteInfoResult(result, snapshotMetadata, snapshotIDs, referencedBlobs)
 
@@ -256,7 +283,7 @@ func (v *Vaultik) RemoteInfo(jsonOutput bool) error {
 		"snapshots", result.TotalMetadataCount,
 		"total_blobs", result.TotalBlobCount,
 		"referenced_blobs", result.ReferencedBlobCount,
-		"orphaned_blobs", result.OrphanedBlobCount)
+		"unreadable_manifests", len(result.UnreadableManifests))
 
 	if jsonOutput {
 		enc := json.NewEncoder(v.Stdout)
@@ -273,16 +300,18 @@ func (v *Vaultik) RemoteInfo(jsonOutput bool) error {
 }
 
 // collectSnapshotMetadata scans remote metadata and returns
-// per-snapshot info and sorted IDs.
+// per-snapshot info, sorted IDs and the number of manifests it skipped
+// because the name above them is not a remote key.
 func (v *Vaultik) collectSnapshotMetadata() (
-	map[string]*SnapshotMetadataInfo, []string, error,
+	map[string]*SnapshotMetadataInfo, []string, int, error,
 ) {
 	snapshotMetadata := make(map[string]*SnapshotMetadataInfo)
+	skippedManifestCount := 0
 
 	metadataCh := v.Storage.ListStream(v.ctx, "metadata/")
 	for obj := range metadataCh {
 		if obj.Err != nil {
-			return nil, nil, fmt.Errorf("listing metadata: %w", obj.Err)
+			return nil, nil, 0, fmt.Errorf("listing metadata: %w", obj.Err)
 		}
 
 		parts := strings.Split(obj.Key, "/")
@@ -291,6 +320,22 @@ func (v *Vaultik) collectSnapshotMetadata() (
 		}
 
 		snapshotID := parts[1]
+		filename := parts[2]
+		isManifest := filename == "manifest.json.zst"
+
+		// The name comes from the destination store, which is not
+		// trusted, and is printed in the report. Accept it only in the
+		// form of a remote key.
+		if !isBlobHash(snapshotID) {
+			log.Warn("Skipping non-conforming key under metadata/",
+				"key", obj.Key)
+
+			if isManifest {
+				skippedManifestCount++
+			}
+
+			continue
+		}
 
 		if _, exists := snapshotMetadata[snapshotID]; !exists {
 			snapshotMetadata[snapshotID] = &SnapshotMetadataInfo{SnapshotID: snapshotID}
@@ -298,7 +343,10 @@ func (v *Vaultik) collectSnapshotMetadata() (
 
 		info := snapshotMetadata[snapshotID]
 
-		filename := parts[2]
+		if isManifest {
+			info.hasManifest = true
+		}
+
 		if strings.HasPrefix(filename, "manifest") {
 			info.ManifestSize = obj.Size
 		} else if strings.HasPrefix(filename, "db") {
@@ -315,17 +363,29 @@ func (v *Vaultik) collectSnapshotMetadata() (
 
 	sort.Strings(snapshotIDs)
 
-	return snapshotMetadata, snapshotIDs, nil
+	return snapshotMetadata, snapshotIDs, skippedManifestCount, nil
 }
 
-// collectReferencedBlobsFromManifests downloads manifests and returns
-// referenced blob hashes with sizes.
+// collectReferencedBlobsFromManifests downloads the listed manifests
+// and returns referenced blob hashes with sizes, and the remote keys
+// of the manifests it could not read.
 func (v *Vaultik) collectReferencedBlobsFromManifests(
 	snapshotIDs []string, snapshotMetadata map[string]*SnapshotMetadataInfo,
-) map[string]int64 {
+) (map[string]int64, []string) {
 	referencedBlobs := make(map[string]int64)
 
+	var unreadable []string
+
 	for _, snapshotID := range snapshotIDs {
+		info := snapshotMetadata[snapshotID]
+		if !info.hasManifest {
+			// The orphan figures count this directory's blobs as
+			// orphaned, so it references none.
+			info.BlobCount, info.BlobsSize = new(int), new(int64)
+
+			continue
+		}
+
 		// snapshotIDs here are remote keys, taken straight from the
 		// metadata/ listing. downloadManifestByKey is the single reader
 		// for remote manifests; see its doc comment.
@@ -333,11 +393,12 @@ func (v *Vaultik) collectReferencedBlobsFromManifests(
 		if err != nil {
 			log.Warn("Failed to read manifest", "snapshot", snapshotID, "error", err)
 
+			unreadable = append(unreadable, snapshotID)
+
 			continue
 		}
 
-		info := snapshotMetadata[snapshotID]
-		info.BlobCount = manifest.BlobCount
+		blobCount := manifest.BlobCount
 
 		var blobsSize int64
 
@@ -346,10 +407,11 @@ func (v *Vaultik) collectReferencedBlobsFromManifests(
 			blobsSize += blob.CompressedSize
 		}
 
-		info.BlobsSize = blobsSize
+		info.BlobCount = &blobCount
+		info.BlobsSize = &blobsSize
 	}
 
-	return referencedBlobs
+	return referencedBlobs, unreadable
 }
 
 // populateRemoteInfoResult fills in the result's snapshot and
@@ -378,8 +440,9 @@ func (v *Vaultik) populateRemoteInfoResult(
 }
 
 // scanRemoteBlobStorage lists all blobs on remote and computes orphan
-// stats. showText is true only when the human report is being printed
-// (not --json, not --quiet), gating the progress line.
+// stats when every listed manifest was read. showText is true only
+// when the human report is being printed (not --json, not --quiet),
+// gating the progress line.
 func (v *Vaultik) scanRemoteBlobStorage(
 	result *RemoteInfoResult, referencedBlobs map[string]int64, showText bool,
 ) error {
@@ -387,32 +450,40 @@ func (v *Vaultik) scanRemoteBlobStorage(
 		v.stdoutf("Scanning blobs...\n")
 	}
 
-	blobCh := v.Storage.ListStream(v.ctx, "blobs/")
-	allBlobs := make(map[string]int64)
-
-	for obj := range blobCh {
-		if obj.Err != nil {
-			return fmt.Errorf("listing blobs: %w", obj.Err)
-		}
-
-		parts := strings.Split(obj.Key, "/")
-		if len(parts) < blobKeyParts {
-			continue
-		}
-
-		hash := parts[3]
-		allBlobs[hash] = obj.Size
-		result.TotalBlobCount++
-		result.TotalBlobSize += obj.Size
+	// Use prune's listing, so a file under blobs/ that prune would never
+	// delete is not counted as a blob, and so not as an orphaned one.
+	allBlobs, err := v.listAllRemoteBlobs()
+	if err != nil {
+		return err
 	}
 
+	for _, size := range allBlobs {
+		result.TotalBlobCount++
+		result.TotalBlobSize += size
+	}
+
+	// A blob named only by a manifest that could not be read, or by one
+	// under a skipped name, would be counted as orphaned, so the orphan
+	// figures stay unknown.
+	if len(result.UnreadableManifests) > 0 || result.SkippedManifestCount > 0 {
+		return nil
+	}
+
+	var (
+		orphanedCount int
+		orphanedSize  int64
+	)
+
 	for hash, size := range allBlobs {
 		if _, referenced := referencedBlobs[hash]; !referenced {
-			result.OrphanedBlobCount++
-			result.OrphanedBlobSize += size
+			orphanedCount++
+			orphanedSize += size
 		}
 	}
 
+	result.OrphanedBlobCount = &orphanedCount
+	result.OrphanedBlobSize = &orphanedSize
+
 	return nil
 }
 
@@ -442,13 +513,23 @@ func (v *Vaultik) printRemoteInfoTable(result *RemoteInfoResult) {
 		v.stdoutf("%s", separator)
 
 		for _, info := range result.Snapshots {
+			blobCount := unknownText
+			if info.BlobCount != nil {
+				blobCount = humanize.Comma(int64(*info.BlobCount))
+			}
+
+			blobsSize := unknownText
+			if info.BlobsSize != nil {
+				blobsSize = ubytes(*info.BlobsSize)
+			}
+
 			v.stdoutf(rowFormat,
 				truncateString(info.SnapshotID, snapshotIDColWidth),
 				ubytes(info.ManifestSize),
 				ubytes(info.DatabaseSize),
 				ubytes(info.TotalSize),
-				humanize.Comma(int64(info.BlobCount)),
-				ubytes(info.BlobsSize),
+				blobCount,
+				blobsSize,
 			)
 		}
 
@@ -465,11 +546,21 @@ func (v *Vaultik) printRemoteInfoTable(result *RemoteInfoResult) {
 	v.stdoutf("Referenced by snapshots:    %s (%s)\n",
 		humanize.Comma(int64(result.ReferencedBlobCount)),
 		ubytes(result.ReferencedBlobSize))
-	v.stdoutf("Orphaned (unreferenced):    %s (%s)\n",
-		humanize.Comma(int64(result.OrphanedBlobCount)),
-		ubytes(result.OrphanedBlobSize))
 
-	if result.OrphanedBlobCount > 0 {
+	if result.OrphanedBlobCount == nil {
+		v.stdoutf("Orphaned (unreferenced):    unknown "+
+			"(%d manifest(s) could not be read, "+
+			"%d manifest(s) under a non-conforming name skipped)\n",
+			len(result.UnreadableManifests), result.SkippedManifestCount)
+
+		return
+	}
+
+	v.stdoutf("Orphaned (unreferenced):    %s (%s)\n",
+		humanize.Comma(int64(*result.OrphanedBlobCount)),
+		ubytes(*result.OrphanedBlobSize))
+
+	if *result.OrphanedBlobCount > 0 {
 		v.stdoutf("\nRun 'vaultik prune' to remove orphaned blobs.\n")
 	}
 }

internal/vaultik/integration_test.go

@@ -155,6 +155,12 @@ func (m *MockStorer) ListStream(
 	return ch
 }
 
+// DeletePartialUploads has nothing to remove: Put stores each object
+// under its key at once.
+func (m *MockStorer) DeletePartialUploads(_ context.Context, _ string) error {
+	return nil
+}
+
 func (m *MockStorer) Info() storage.Info {
 	return storage.Info{
 		Type:     "mock",
@@ -249,7 +255,7 @@ func verifyEndToEndBackupState(
 	assert.Positive(t, blobUploads, "Should upload at least one blob")
 
 	// Verify files in database
-	files, err := repos.Files.ListByPrefix(ctx, "/home/user")
+	files, err := repos.Files.ListUnderPath(ctx, "/home/user")
 	require.NoError(t, err)
 	// Count only regular files (not directories)
 	regularFiles := 0
@@ -765,7 +771,7 @@ func TestEndToEndFileStorage(t *testing.T) {
 	tempDir := t.TempDir()
 
 	dataDir := filepath.Join(tempDir, "source")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
@@ -928,17 +934,17 @@ func setupDedupBackupEnv(
 	}
 }
 
-// runDedupSnapshot creates a "dedup" snapshot, scans dataDir into it,
-// completes it, and exports its metadata, returning the snapshot ID and
-// scan result.
+// runDedupSnapshot creates a snapshot with the given name, scans dataDir
+// into it, completes it, and exports its metadata, returning the snapshot
+// ID and scan result.
 func runDedupSnapshot(
 	ctx context.Context, t *testing.T,
 	sm *snapshot.SnapshotManager, scanner *snapshot.Scanner,
-	hostname, dataDir, dbPath string,
+	hostname, name, dataDir, dbPath string,
 ) (string, *snapshot.ScanResult) {
 	t.Helper()
 
-	id, err := sm.CreateSnapshotWithName(ctx, hostname, "dedup", "v", "g")
+	id, err := sm.CreateSnapshotWithName(ctx, hostname, name, "v", "g")
 	require.NoError(t, err)
 
 	result, err := scanner.Scan(ctx, dataDir, id)
@@ -958,7 +964,7 @@ func TestDedupOnlySnapshotRestores(t *testing.T) {
 	tempDir := t.TempDir()
 
 	dataDir := filepath.Join(tempDir, "source")
-	storeDir := filepath.Join(tempDir, "remote")
+	storeDir := t.TempDir()
 	restoreDir := filepath.Join(tempDir, "restored")
 	dbPath := filepath.Join(tempDir, "index.sqlite")
 
@@ -980,16 +986,15 @@ func TestDedupOnlySnapshotRestores(t *testing.T) {
 
 	// First snapshot — uploads all blobs.
 	_, r1 := runDedupSnapshot(ctx, t, sm, makeScanner(),
-		cfg.Hostname, dataDir, dbPath)
+		cfg.Hostname, "first", dataDir, dbPath)
 	require.Positive(t, r1.BlobsCreated,
 		"first snapshot should upload at least one blob")
 
-	// Second snapshot — same data, every chunk dedups. Sleep past the
-	// second-precision timestamp so the snapshot IDs differ.
-	time.Sleep(1100 * time.Millisecond)
-
+	// Second snapshot — same data, every chunk dedups. Its own name gives
+	// it a different snapshot ID without waiting for the one-second
+	// timestamp in the ID to tick over.
 	id2, r2 := runDedupSnapshot(ctx, t, sm, makeScanner(),
-		cfg.Hostname, dataDir, dbPath)
+		cfg.Hostname, "second", dataDir, dbPath)
 	require.Equal(t, 0, r2.BlobsCreated,
 		"second snapshot should upload zero new blobs (fully dedup'd)")
 

internal/vaultik/missing_destination_test.go

@@ -6,6 +6,7 @@ import (
 	"io/fs"
 	"os"
 	"path/filepath"
+	"strings"
 	"testing"
 
 	"github.com/spf13/afero"
@@ -23,13 +24,11 @@ import (
 // that is not plugged in, cannot be listed. It is not an empty store, so
 // no command may conclude from it that the local snapshots are gone.
 
-// backUpToFileDestination backs up the snapshot named "first" to a
-// file:// destination at storeDir, which need not exist yet. Everything
-// the returned Vaultik prints after the backup goes to the returned
-// buffer.
-func backUpToFileDestination(
+// newFileDestinationVaultik returns a Vaultik that backs up the
+// snapshot named "first" to a file:// destination at storeDir.
+func newFileDestinationVaultik(
 	ctx context.Context, t *testing.T, storeDir string,
-) (*vaultik.Vaultik, *database.Repositories, *bytes.Buffer) {
+) (*vaultik.Vaultik, *database.Repositories) {
 	t.Helper()
 
 	osFs := afero.NewOsFs()
@@ -48,8 +47,22 @@ func backUpToFileDestination(
 
 	repos := database.NewRepositories(db)
 	cfg := changedFileConfig(dataDir, dbPath)
-	v := newBackupVaultik(ctx, cfg, store, repos, db, osFs)
 
+	return newBackupVaultik(ctx, cfg, store, repos, db, osFs), repos
+}
+
+// backUpToFileDestination creates the directory storeDir, as a user must
+// before the first backup, and backs up the snapshot named "first" to a
+// file:// destination there. Everything the returned Vaultik prints
+// after the backup goes to the returned buffer.
+func backUpToFileDestination(
+	ctx context.Context, t *testing.T, storeDir string,
+) (*vaultik.Vaultik, *database.Repositories, *bytes.Buffer) {
+	t.Helper()
+
+	require.NoError(t, os.MkdirAll(storeDir, 0o750))
+
+	v, repos := newFileDestinationVaultik(ctx, t, storeDir)
 	require.NoError(t, backUp(v, "first"))
 
 	out := &bytes.Buffer{}
@@ -74,31 +87,36 @@ func backUpThenUnplug(
 	return v, repos, out
 }
 
-// TestFirstBackupCreatesDestinationDirectory checks that a first backup
-// to a destination directory that does not exist yet creates it, and
-// that the destination can be listed afterwards.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
-func TestFirstBackupCreatesDestinationDirectory(t *testing.T) {
+// TestBackupFailsWhenDestinationDirectoryMissing checks that a backup to
+// a file:// destination whose directory does not exist fails before it
+// records a snapshot, and does not create the directory.
+func TestBackupFailsWhenDestinationDirectoryMissing(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	ctx := context.Background()
-	storeDir := filepath.Join(t.TempDir(), "volume", "backup")
-	v, _, out := backUpToFileDestination(ctx, t, storeDir)
+	volume := filepath.Join(t.TempDir(), "volume")
+	v, repos := newFileDestinationVaultik(ctx, t, filepath.Join(volume, "backup"))
 
-	require.NoError(t, v.ListSnapshots(false))
+	err := backUp(v, "first")
+	require.ErrorIs(t, err, fs.ErrNotExist)
+	require.ErrorContains(t, err, "create it, or mount the volume it is on")
 
-	assert.NotContains(t, out.String(), "Could not list backup destination store")
-	assert.NotContains(t, out.String(), "not found in backup destination store")
+	_, err = os.Stat(volume)
+	require.ErrorIs(t, err, fs.ErrNotExist,
+		"the backup must not create the destination directory")
+
+	snapshots, err := repos.Snapshots.ListRecent(ctx, listRecentTestLimit)
+	require.NoError(t, err)
+	assert.Empty(t, snapshots)
 }
 
 // TestListSnapshotsWarnsWhenDestinationMissing checks that snapshot list
 // warns and shows the local index alone, without reporting the local
 // snapshot as missing from the destination.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestListSnapshotsWarnsWhenDestinationMissing(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	ctx := context.Background()
 	v, repos, out := backUpThenUnplug(ctx, t)
@@ -115,10 +133,9 @@ func TestListSnapshotsWarnsWhenDestinationMissing(t *testing.T) {
 // TestRemoveSnapshotWarnsWhenDestinationMissing checks that snapshot
 // remove warns that the metadata could not be removed from the
 // destination, instead of reporting that it was.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestRemoveSnapshotWarnsWhenDestinationMissing(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	ctx := context.Background()
 	v, repos, out := backUpThenUnplug(ctx, t)
@@ -137,10 +154,9 @@ func TestRemoveSnapshotWarnsWhenDestinationMissing(t *testing.T) {
 // TestPruneKeepsLocalRecordsWhenDestinationMissing checks that prune
 // fails on a destination it cannot list and deletes no local snapshot
 // record.
-//
-//nolint:paralleltest // installs the global logger via log.Initialize
 func TestPruneKeepsLocalRecordsWhenDestinationMissing(t *testing.T) {
 	log.Initialize(log.Config{})
+	t.Parallel()
 
 	ctx := context.Background()
 	v, repos, _ := backUpThenUnplug(ctx, t)
@@ -153,3 +169,22 @@ func TestPruneKeepsLocalRecordsWhenDestinationMissing(t *testing.T) {
 	require.NoError(t, err)
 	assert.Len(t, snapshots, 1, "prune must delete no local snapshot record")
 }
+
+// TestPurgeSaysListingFailedOnceWhenDestinationMissing checks that
+// snapshot purge fails on a destination it cannot list, with an error
+// that says "listing remote snapshots" once.
+func TestPurgeSaysListingFailedOnceWhenDestinationMissing(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	v, _, _ := backUpThenUnplug(ctx, t)
+
+	err := v.PurgeSnapshotsWithOptions(&vaultik.SnapshotPurgeOptions{
+		KeepLatest: true,
+		Force:      true,
+	})
+	require.ErrorIs(t, err, fs.ErrNotExist)
+	assert.Equal(t, 1, strings.Count(err.Error(), "listing remote snapshots"),
+		err.Error())
+}

internal/vaultik/nuke_remote_test.go

@@ -0,0 +1,64 @@
+package vaultik_test
+
+import (
+	"context"
+	"io/fs"
+	"os"
+	"path/filepath"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+	"sneak.berlin/go/vaultik/internal/log"
+	"sneak.berlin/go/vaultik/internal/snapshot"
+)
+
+// TestNukeRemoteLeavesNoFiles checks that remote nuke leaves no file
+// under a file:// destination, including the `.partial` files uploads
+// killed part-way leave next to a snapshot's metadata and next to where a
+// blob would have been.
+func TestNukeRemoteLeavesNoFiles(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	storeDir := filepath.Join(t.TempDir(), "store")
+	v, repos, _ := backUpToFileDestination(ctx, t, storeDir)
+
+	snapshots, err := repos.Snapshots.ListRecent(ctx, listRecentTestLimit)
+	require.NoError(t, err)
+	require.Len(t, snapshots, 1)
+
+	snapshotKey := snapshot.RemoteSnapshotKey(snapshots[0].ID.String())
+	hash := testBlobHashA
+	leftovers := []string{
+		filepath.Join(storeDir, "metadata", snapshotKey,
+			"db.zst.age-123456.partial"),
+		filepath.Join(storeDir, "blobs", hash[:2], hash[2:4],
+			hash+"-123456.partial"),
+	}
+
+	for _, leftover := range leftovers {
+		require.NoError(t, os.MkdirAll(filepath.Dir(leftover), 0o750))
+		require.NoError(t, os.WriteFile(leftover, []byte("half an upload"), 0o600))
+	}
+
+	require.NoError(t, v.NukeRemote(true))
+
+	var files []string
+
+	err = filepath.WalkDir(storeDir,
+		func(path string, entry fs.DirEntry, err error) error {
+			if err != nil {
+				return err
+			}
+
+			if !entry.IsDir() {
+				files = append(files, path)
+			}
+
+			return nil
+		})
+	require.NoError(t, err)
+	assert.Empty(t, files)
+}

internal/vaultik/prune.go

@@ -23,9 +23,15 @@ var errNukeRequiresForce = errors.New(
 // metadata.
 const metadataDirName = "metadata"
 
+// blobKeyParts is the "/"-separated segment count of a blob object key
+// (blobs/<aa>/<bb>/<hash>).
+const blobKeyParts = 4
+
 // NukeRemote deletes every snapshot's metadata and every blob from remote
-// storage. After this returns successfully the bucket prefix is empty and
-// the next backup starts from scratch.
+// storage, along with any object an upload cut off part-way left under a
+// temporary `.partial` name, and the destination marker. After this
+// returns successfully the bucket prefix is empty and the next backup
+// starts from scratch.
 //
 // Refuses to run unless force is true. The caller is responsible for
 // confirming with the user.
@@ -48,6 +54,22 @@ func (v *Vaultik) NukeRemote(force bool) error {
 		return fmt.Errorf("pruning blobs: %w", err)
 	}
 
+	// The file and rclone listings skip `.partial` objects, so the two
+	// steps above never delete them.
+	for _, prefix := range []string{"metadata/", "blobs/"} {
+		err = v.Storage.DeletePartialUploads(v.ctx, prefix)
+		if err != nil {
+			return fmt.Errorf("deleting partial uploads: %w", err)
+		}
+	}
+
+	// Last, once the local snapshot records are gone: the next backup
+	// then has none and writes the marker again.
+	err = v.Storage.Delete(v.ctx, destinationMarkerKey)
+	if err != nil {
+		return fmt.Errorf("deleting %s: %w", destinationMarkerKey, err)
+	}
+
 	v.UI.Completef("Backup destination store is now empty.")
 
 	return nil