Stop vault safety checks from reading unreadable state as empty (closes #51)

Adding a PGP unlocker checked unlockers.d for a duplicate and, when the
directory could not be read, reported no duplicate and went on. It now
stops with an error naming the directory and cause.

The same flaw guarded removing the last unlocker and removing a vault
(an unreadable secrets directory counted as no secrets) and vault
import (an unreadable pub.age counted as no long-term key). Those now
stop with an error too. `unlocker list` keeps skipping entries it
cannot read.

`vault rm` and `unlocker rm` now take the state directory lock and call
an unexported function that does the work, as `vault import` does, so
the tests can reach their checks.

Model: opus-5-5

TODO.md

@@ -25,6 +25,13 @@ Bring the repo into policy compliance in one commit:
 
 # Completed Steps
 
+- 2026-10-04: The `internal/cli` tests are back to about their time
+  before the state directory lock
+  (https://git.eeqj.de/sneak/secret/issues/80). The test that each
+  changing command waits for the lock releases it as soon as it sees the
+  command waiting there, instead of after a fixed 100 ms. The two vaults
+  with passphrase unlockers that the path and move tests start from are
+  made once and copied for each test.
 - 2026-10-04: `secret mv` rejects a move whose destination is the source
   under another name, such as `foo` for `Foo` on a case-insensitive
   filesystem (the macOS default) or a name reached through a symbolic
@@ -82,6 +89,13 @@ Bring the repo into policy compliance in one commit:
       being removed, encrypted keys included. Nothing deletes it; it
       must be deleted by hand
       (https://git.eeqj.de/sneak/secret/issues/75).
+- 2026-10-03: The checks run before changing a vault now stop with an
+  error naming the path and cause when they cannot read what they
+  inspect, instead of reading the failure as "nothing there": the
+  duplicate check before `unlocker add pgp` (an unreadable
+  `unlockers.d`), the secret count that guards removing the last
+  unlocker and removing a vault, and the existing long-term key check
+  before `vault import`.
 - 2026-10-03: `version rm`, `version promote` and `get --version`
   accept a version only if it is one of the versions `version list`
   lists for that secret, compared as typed before any path is built

internal/cli/lock_test.go

@@ -2,9 +2,11 @@
 package cli
 
 import (
+	"bytes"
 	"io"
 	"os"
 	"path/filepath"
+	"runtime"
 	"strconv"
 	"strings"
 	"sync"
@@ -25,11 +27,6 @@ const (
 	// once the lock is free.
 	lockWait = 10 * time.Second
 
-	// heldWait is how long a test watches a command that must wait for the
-	// lock. A command that takes no lock changes the state directory well
-	// within it.
-	heldWait = 100 * time.Millisecond
-
 	// testPassphrase protects the passphrase unlockers the tests create.
 	testPassphrase = "test-passphrase"
 
@@ -323,10 +320,28 @@ func setupEveryCommand(
 	return versions[1], unlockerID
 }
 
+// waitingForLock reports whether a goroutine is stopped in
+// vault.LockStateDir, waiting for the in-memory filesystem's lock. The
+// stack trace of such a goroutine starts with the reason it waits,
+// "[sync.Mutex.Lock]", and names LockStateDir.
+func waitingForLock() bool {
+	stacks := make([]byte, 1<<20)
+	stacks = stacks[:runtime.Stack(stacks, true)]
+
+	for goroutine := range bytes.SplitSeq(stacks, []byte("\n\n")) {
+		if bytes.Contains(goroutine, []byte("[sync.Mutex.Lock")) &&
+			bytes.Contains(goroutine, []byte("vault.LockStateDir(")) {
+			return true
+		}
+	}
+
+	return false
+}
+
 // requireWaitsForLock runs a command, given what setupEveryCommand made,
 // while holding the state directory lock. The command must neither finish
-// nor change anything while the lock is held, and must succeed once it is
+// nor change anything before it waits for the lock, and must succeed once
-// released.
+// the lock is released.
 func requireWaitsForLock(
 	t *testing.T,
 	withUnlocker bool,
@@ -355,14 +370,20 @@ func requireWaitsForLock(
 
 	go func() { done <- run(cli, olderVersion, unlockerID) }()
 
-	select {
+	timeout := time.After(lockWait)
-	case err := <-done:
+
-		t.Fatalf("finished while the lock was held, with error %v", err)
+	for !waitingForLock() {
-	case <-time.After(heldWait):
+		select {
+		case err := <-done:
+			t.Fatalf("finished while the lock was held, with error %v", err)
+		case <-timeout:
+			t.Fatal("never waited for the lock")
+		case <-time.After(time.Millisecond):
+		}
 	}
 
 	assert.Equal(t, before, stateDirModTimes(t, fs),
-		"changed the state directory while the lock was held")
+		"changed the state directory before waiting for the lock")
 
 	release()
 

internal/cli/path_traversal_test.go

@@ -6,6 +6,7 @@ import (
 	"os"
 	"slices"
 	"strings"
+	"sync"
 	"testing"
 
 	"git.eeqj.de/sneak/secret/internal/cli"
@@ -32,9 +33,20 @@ const (
 	missingFile = "/no/such/file"
 )
 
+// The state directory newTwoVaultFs copies, recorded by snapshotStateDir.
+// Creating a passphrase unlocker is slow by design, so the vaults are made
+// once, by the first test that needs them.
+//
+//nolint:gochecknoglobals // shared by the tests that use newTwoVaultFs
+var (
+	twoVaultsOnce sync.Once
+	twoVaults     map[string]string
+)
+
 // newTwoVaultFs returns an in-memory filesystem holding the vaults "work"
 // and "default", the current one. Each holds the secret "x" and a
 // passphrase unlocker, so both secrets.d and unlockers.d have contents.
+// Every call returns a new copy of the same vaults.
 //
 //nolint:ireturn // afero.Fs is the filesystem abstraction used throughout
 func newTwoVaultFs(t *testing.T) afero.Fs {
@@ -42,21 +54,27 @@ func newTwoVaultFs(t *testing.T) afero.Fs {
 
 	t.Setenv(secret.EnvMnemonic, testMnemonic)
 
-	fs := afero.NewMemMapFs()
+	twoVaultsOnce.Do(func() {
+		fs := afero.NewMemMapFs()
 
-	for _, name := range []string{"work", "default"} {
+		for _, name := range []string{"work", "default"} {
-		vlt, err := vault.CreateVault(fs, testStateDir, name)
+			vlt, err := vault.CreateVault(fs, testStateDir, name)
-		require.NoError(t, err)
+			require.NoError(t, err)
 
-		err = vlt.AddSecret("x", memguard.NewBufferFromBytes([]byte("value")), false)
+			err = vlt.AddSecret("x", memguard.NewBufferFromBytes([]byte("value")), false)
-		require.NoError(t, err)
+			require.NoError(t, err)
 
-		_, err = vlt.CreatePassphraseUnlocker(
+			_, err = vlt.CreatePassphraseUnlocker(
-			memguard.NewBufferFromBytes([]byte(testPassphrase)))
+				memguard.NewBufferFromBytes([]byte(testPassphrase)))
-		require.NoError(t, err)
+			require.NoError(t, err)
-	}
+		}
 
-	return fs
+		twoVaults = snapshotStateDir(t, fs)
+	})
+
+	require.NotNil(t, twoVaults, "making the vaults failed in an earlier test")
+
+	return newFsFromSnapshot(t, twoVaults)
 }
 
 // snapshotStateDir maps every file under the state directory to its

internal/cli/unlockers.go

@@ -49,7 +49,6 @@ var (
 		"is already added as an unlocker")
 	errUnsupportedUnlockerType = errors.New("unsupported unlocker type")
 	errLastUnlocker            = errors.New("refusing to remove last unlocker")
-	errUnlockerExists          = errors.New("unlocker already exists")
 )
 
 // UnlockerInfo represents unlocker information for display
@@ -346,9 +345,10 @@ func unlockerIDFromDir(
 // stored metadata matches the given type and creation time and returns
 // the matching unlocker's ID. It returns ("", nil) when the directory is
 // readable but holds no match, and a non-nil error when the directory
-// itself cannot be read. Callers must distinguish the two: an unreadable
+// itself cannot be read, which means the unlocker's ID cannot be known.
-// directory means the unlocker's real ID is unknowable, so the entry has
+// `unlocker list` then skips the entry rather than show a made-up ID; the
-// to be skipped rather than reported under a synthesized ID.
+// duplicate check before adding an unlocker must stop instead, because
+// the skipped entry may be the duplicate.
 //
 // A metadata file that cannot be read or parsed is skipped without a
 // warning: every caller gets metadata from vault.ListUnlockers first,
@@ -695,8 +695,15 @@ func (cli *Instance) addPGPUnlocker(cmd *cobra.Command) error {
 	// Check if this GPG key is already added
 	expectedID := "pgp-" + fingerprint
 
-	err = cli.checkUnlockerExists(vlt, expectedID)
+	exists, err := cli.checkUnlockerExists(vlt, expectedID)
 	if err != nil {
+		return fmt.Errorf(
+			"could not check whether GPG key %s is already an unlocker: %w",
+			gpgKeyID, err,
+		)
+	}
+
+	if exists {
 		return fmt.Errorf("GPG key %s %w", gpgKeyID, errGPGKeyAlreadyUnlocker)
 	}
 
@@ -714,7 +721,8 @@ func (cli *Instance) addPGPUnlocker(cmd *cobra.Command) error {
 	return nil
 }
 
-// UnlockersRemove removes an unlocker with safety checks
+// UnlockersRemove removes an unlocker, holding the state directory lock
+// while removeUnlocker runs
 func (cli *Instance) UnlockersRemove(
 	unlockerID string, force bool, cmd *cobra.Command,
 ) error {
@@ -724,6 +732,13 @@ func (cli *Instance) UnlockersRemove(
 	}
 	defer release()
 
+	return cli.removeUnlocker(unlockerID, force, cmd)
+}
+
+// removeUnlocker removes an unlocker with safety checks
+func (cli *Instance) removeUnlocker(
+	unlockerID string, force bool, cmd *cobra.Command,
+) error {
 	// Get current vault
 	vlt, err := vault.GetCurrentVault(cli.fs, cli.stateDir)
 	if err != nil {
@@ -788,44 +803,38 @@ func (cli *Instance) UnlockerSelect(unlockerID string) error {
 	return vlt.SelectUnlocker(unlockerID)
 }
 
-// checkUnlockerExists checks if an unlocker with the given ID exists
+// checkUnlockerExists reports whether the vault already has an unlocker
-func (cli *Instance) checkUnlockerExists(vlt *vault.Vault, unlockerID string) error {
+// with the given ID. It returns an error, and no answer, when unlockers.d
-	// Get the list of unlockers and check if any match the ID
+// cannot be read; the caller must then not create the unlocker.
-	unlockers, err := vlt.ListUnlockers()
+func (cli *Instance) checkUnlockerExists(
-	if err != nil {
+	vlt *vault.Vault, unlockerID string,
-		secret.Warn("Could not list unlockers during duplicate check", "error", err)
+) (bool, error) {
-
-		return nil // If we can't list unlockers, assume it doesn't exist
-	}
-
-	// Get vault directory to construct unlocker instances
 	vaultDir, err := vlt.GetDirectory()
 	if err != nil {
-		secret.Warn("Could not get vault directory during duplicate check",
+		return false, fmt.Errorf("failed to get vault directory: %w", err)
-			"error", err)
-
-		return nil
 	}
 
-	// Check each unlocker's ID
 	unlockersDir := filepath.Join(vaultDir, "unlockers.d")
 
+	unlockers, err := vlt.ListUnlockers()
+	if err != nil {
+		return false, fmt.Errorf(
+			"failed to list unlockers in %s: %w", unlockersDir, err,
+		)
+	}
+
 	for _, metadata := range unlockers {
 		// Construct the unlocker matching this metadata to get its ID
 		id, err := findUnlockerIDByMetadata(cli.fs, unlockersDir, metadata, true)
 		if err != nil {
-			secret.Warn(
+			// Unlike `unlocker list`, never skip here: a skipped entry may be the duplicate.
-				"Could not read unlockers directory during duplicate check, "+
+			return false, err
-					"skipping unlocker",
-				"unlockers_dir", unlockersDir, "error", err)
-
-			continue
 		}
 
 		if id != "" && id == unlockerID {
-			return errUnlockerExists
+			return true, nil
 		}
 	}
 
-	return nil
+	return false, nil
 }

internal/cli/unreadable_dir_test.go

@@ -0,0 +1,322 @@
+// Unreadable Directory Tests
+//
+// The checks that guard adding a PGP unlocker (is this key already an
+// unlocker?), removing the last unlocker and removing a vault (does the
+// vault hold secrets?), and importing a mnemonic (does the vault already
+// have a long-term key?) each look at the vault on disk before acting.
+// When that look fails they must refuse to act, not read the failure as
+// "nothing there" and go ahead.
+//
+// The tests make the look fail with a wrapper around the in-memory
+// filesystem, which the state directory lock refuses. So they call the
+// function each command runs once it holds the lock, such as removeVault
+// for RemoveVault.
+
+//nolint:testpackage // white-box test of unexported internals
+package cli
+
+import (
+	"context"
+	"errors"
+	"io"
+	"os"
+	"os/exec"
+	"path/filepath"
+	"testing"
+	"time"
+
+	"git.eeqj.de/sneak/secret/internal/secret"
+	"github.com/spf13/afero"
+	"github.com/spf13/cobra"
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+const (
+	// unreadableTestGPGUserID is the user ID of the throwaway GPG key the
+	// PGP unlocker tests generate, and the --keyid they pass.
+	unreadableTestGPGUserID = "unlocker-test@example.com"
+
+	// unreadableTestSecretName is the secret stored in the vaults the
+	// removal tests remove from.
+	unreadableTestSecretName = "api-key"
+
+	// unreadableTestOtherVault is a second vault for the vault removal
+	// test, since the last vault can never be removed.
+	unreadableTestOtherVault = "work"
+
+	// unreadableTestSecretsDirName is the directory holding a vault's
+	// secrets, and unreadableTestCurrentFileName the per-secret file
+	// naming its current version.
+	unreadableTestSecretsDirName  = "secrets.d"
+	unreadableTestCurrentFileName = "current"
+)
+
+// errStatFailed is returned by statFailFs in place of a successful stat.
+var errStatFailed = errors.New("input/output error")
+
+// statFailFs fails every Stat of one path, as an I/O or permission error
+// on that path would.
+type statFailFs struct {
+	afero.Fs
+
+	path string
+}
+
+func (f *statFailFs) Stat(name string) (os.FileInfo, error) {
+	if name == f.path {
+		return nil, errStatFailed
+	}
+
+	return f.Fs.Stat(name)
+}
+
+// errOpenFailed is returned by openFailFs in place of a successful open.
+var errOpenFailed = errors.New("permission denied")
+
+// openFailFs fails every Open of one path, as a directory without read
+// permission does: checking that it exists succeeds, listing it fails.
+type openFailFs struct {
+	afero.Fs
+
+	path string
+}
+
+//nolint:ireturn // afero.File is the interface required by afero.Fs
+func (f *openFailFs) Open(name string) (afero.File, error) {
+	if name == f.path {
+		return nil, errOpenFailed
+	}
+
+	return f.Fs.Open(name)
+}
+
+// testVaultDir returns the directory of the named vault in the synthetic
+// state directory built by newListTestVault.
+func testVaultDir(vaultName string) string {
+	return filepath.Join(listTestStateDir, "vaults.d", vaultName)
+}
+
+// newTestInstance returns a CLI instance on fs whose output is discarded.
+func newTestInstance(fs afero.Fs) (*Instance, *cobra.Command) {
+	cmd := &cobra.Command{}
+	cmd.SetOut(io.Discard)
+	cmd.SetErr(io.Discard)
+
+	return &Instance{fs: fs, stateDir: listTestStateDir, cmd: cmd}, cmd
+}
+
+// assertDirEntries asserts that dir holds exactly the named entries.
+func assertDirEntries(t *testing.T, fs afero.Fs, dir string, want ...string) {
+	t.Helper()
+
+	entries, err := afero.ReadDir(fs, dir)
+	require.NoError(t, err)
+
+	names := make([]string, 0, len(entries))
+	for _, entry := range entries {
+		names = append(names, entry.Name())
+	}
+
+	assert.ElementsMatch(t, want, names)
+}
+
+// newTestGPGKey points GNUPGHOME at a fresh directory, generates a GPG key
+// without a passphrase there, and returns the key's fingerprint.
+func newTestGPGKey(t *testing.T) string {
+	t.Helper()
+
+	// Not t.TempDir(): on macOS its path is too long for the gpg-agent
+	// socket, which is created inside GNUPGHOME there.
+	gnupgHome, err := os.MkdirTemp("", "gpg") //nolint:usetesting // short path
+	require.NoError(t, err)
+
+	t.Cleanup(func() { _ = os.RemoveAll(gnupgHome) })
+	t.Setenv("GNUPGHOME", gnupgHome)
+
+	t.Cleanup(func() {
+		// Stop the gpg-agent that key generation starts; cleanups run in
+		// reverse order, so this happens before its directory is removed.
+		// t.Context is already canceled when cleanup runs.
+		ctx := context.WithoutCancel(t.Context())
+		_ = exec.CommandContext(ctx, "gpgconf", "--kill", "gpg-agent").Run()
+	})
+
+	output, err := exec.CommandContext(t.Context(), "gpg", "--batch",
+		"--pinentry-mode", "loopback", "--passphrase", "",
+		"--quick-gen-key", unreadableTestGPGUserID, "ed25519", "sign", "never",
+	).CombinedOutput()
+	require.NoError(t, err, "generating the test GPG key: %s", output)
+
+	fingerprint, err := secret.ResolveGPGKeyFingerprint(unreadableTestGPGUserID)
+	require.NoError(t, err)
+
+	return fingerprint
+}
+
+// addTestPGPUnlocker runs `secret unlocker add pgp` for the test key
+// against fs.
+func addTestPGPUnlocker(fs afero.Fs) error {
+	instance, cmd := newTestInstance(fs)
+	cmd.Flags().String("keyid", unreadableTestGPGUserID, "")
+
+	return instance.addPGPUnlocker(cmd)
+}
+
+// TestAddPGPUnlockerDuplicateCheck asserts that adding a PGP unlocker
+// fails, and creates no unlocker directory, when unlockers.d cannot be
+// read for the duplicate check; and, as the control case, that a readable
+// unlockers.d holding the same key is still refused as a duplicate.
+//
+//nolint:paralleltest // t.Setenv (GNUPGHOME) forbids parallel tests
+func TestAddPGPUnlockerDuplicateCheck(t *testing.T) {
+	fingerprint := newTestGPGKey(t)
+	unlockersDir := filepath.Join(
+		testVaultDir(listTestVaultName), listTestUnlockersDirName)
+
+	tests := []struct {
+		name       string
+		openBudget int
+	}{
+		// The vault's own enumeration of unlockers.d fails.
+		{name: "listing fails", openBudget: 0},
+		// The enumeration succeeds; the rescan that resolves IDs fails.
+		{name: "rescan fails", openBudget: 1},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			base := newListTestVault(t, 1)
+			fs := &unlockersDirFailFs{Fs: base, openBudget: tt.openBudget}
+
+			err := addTestPGPUnlocker(fs)
+
+			require.ErrorIs(t, err, errUnlockersDirUnreadable)
+			require.NotErrorIs(t, err, errGPGKeyAlreadyUnlocker)
+			assert.Contains(t, err.Error(), unlockersDir,
+				"the error must name the directory it could not read")
+			assertDirEntries(t, base, unlockersDir, listTestUnlockerDirOne)
+		})
+	}
+
+	t.Run("duplicate refused", func(t *testing.T) {
+		base := newListTestVault(t, 1)
+		writePGPUnlocker(t, base, unlockersDir, listTestUnlockerDirTwo,
+			time.Date(2026, time.August, 10, 12, 30, 0, 0, time.UTC),
+			fingerprint)
+
+		err := addTestPGPUnlocker(base)
+
+		require.ErrorIs(t, err, errGPGKeyAlreadyUnlocker)
+		assertDirEntries(t, base, unlockersDir,
+			listTestUnlockerDirOne, listTestUnlockerDirTwo)
+	})
+}
+
+// writeTestSecret stores a secret with a current-version pointer, which is
+// what makes it count as a secret, in the given vault directory.
+func writeTestSecret(t *testing.T, fs afero.Fs, vaultDir string) {
+	t.Helper()
+
+	secretDir := filepath.Join(
+		vaultDir, unreadableTestSecretsDirName, unreadableTestSecretName)
+	require.NoError(t, fs.MkdirAll(secretDir, listTestDirPerm))
+	require.NoError(t, afero.WriteFile(fs,
+		filepath.Join(secretDir, unreadableTestCurrentFileName),
+		[]byte("20260809.001"), listTestFilePerm))
+}
+
+// TestRemoveLastUnlockerAbortsWhenSecretsUnreadable asserts that the last
+// unlocker is kept when the secrets it protects cannot be counted.
+func TestRemoveLastUnlockerAbortsWhenSecretsUnreadable(t *testing.T) {
+	t.Parallel()
+
+	vaultDir := testVaultDir(listTestVaultName)
+	unlockersDir := filepath.Join(vaultDir, listTestUnlockersDirName)
+	secretsDir := filepath.Join(vaultDir, unreadableTestSecretsDirName)
+
+	for _, path := range []string{
+		secretsDir,
+		filepath.Join(secretsDir, unreadableTestSecretName,
+			unreadableTestCurrentFileName),
+	} {
+		t.Run(filepath.Base(path), func(t *testing.T) {
+			t.Parallel()
+
+			base := newListTestVault(t, 1)
+			writeTestSecret(t, base, vaultDir)
+			instance, cmd := newTestInstance(&statFailFs{Fs: base, path: path})
+
+			err := instance.removeUnlocker(
+				"pgp-"+listTestGPGKeyID+"A", false, cmd)
+
+			require.ErrorIs(t, err, errStatFailed)
+			assertDirEntries(t, base, unlockersDir, listTestUnlockerDirOne)
+		})
+	}
+}
+
+// TestRemoveVaultAbortsWhenSecretsDirUnreadable asserts that a vault is
+// kept when whether it holds secrets cannot be determined: when checking
+// that secrets.d exists fails, and when it exists but cannot be listed.
+func TestRemoveVaultAbortsWhenSecretsDirUnreadable(t *testing.T) {
+	t.Parallel()
+
+	vaultDir := testVaultDir(unreadableTestOtherVault)
+	secretsDir := filepath.Join(vaultDir, unreadableTestSecretsDirName)
+
+	tests := []struct {
+		name    string
+		failFs  func(base afero.Fs) afero.Fs
+		wantErr error
+	}{
+		{
+			name: "check fails",
+			failFs: func(base afero.Fs) afero.Fs {
+				return &statFailFs{Fs: base, path: secretsDir}
+			},
+			wantErr: errStatFailed,
+		},
+		{
+			name: "listing fails",
+			failFs: func(base afero.Fs) afero.Fs {
+				return &openFailFs{Fs: base, path: secretsDir}
+			},
+			wantErr: errOpenFailed,
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			t.Parallel()
+
+			base := newListTestVault(t, 1)
+			writeTestSecret(t, base, vaultDir)
+			instance, cmd := newTestInstance(tt.failFs(base))
+
+			err := instance.removeVault(cmd, unreadableTestOtherVault, false)
+
+			require.ErrorIs(t, err, tt.wantErr)
+
+			exists, err := afero.DirExists(base, vaultDir)
+			require.NoError(t, err)
+			assert.True(t, exists, "the vault must not be removed")
+		})
+	}
+}
+
+// TestVaultImportAbortsWhenPubKeyUnreadable asserts that a mnemonic import
+// stops when whether the vault already has a long-term key cannot be
+// determined.
+func TestVaultImportAbortsWhenPubKeyUnreadable(t *testing.T) {
+	t.Parallel()
+
+	base := newListTestVault(t, 1)
+	instance, cmd := newTestInstance(&statFailFs{
+		Fs: base, path: filepath.Join(testVaultDir(listTestVaultName), "pub.age"),
+	})
+
+	err := instance.importMnemonic(cmd, listTestVaultName)
+
+	require.ErrorIs(t, err, errStatFailed)
+}

internal/cli/vault.go

@@ -400,8 +400,12 @@ func (cli *Instance) vaultImportPreflight(
 	// Check if vault already has a public key
 	pubKeyPath := vaultDir + "/pub.age"
 
-	_, err = cli.fs.Stat(pubKeyPath)
+	exists, err = afero.Exists(cli.fs, pubKeyPath)
-	if err == nil {
+	if err != nil {
+		return "", "", "", fmt.Errorf("failed to check %s: %w", pubKeyPath, err)
+	}
+
+	if exists {
 		return "", "", "", fmt.Errorf("vault '%s' %w",
 			vaultName, errVaultHasLongTermKey)
 	}
@@ -561,17 +565,26 @@ func (cli *Instance) importMnemonic(cmd *cobra.Command, vaultName string) error
 }
 
 // vaultHasSecrets reports whether the vault directory contains any secrets
-func (cli *Instance) vaultHasSecrets(vaultDir string) bool {
+func (cli *Instance) vaultHasSecrets(vaultDir string) (bool, error) {
 	secretsDir := filepath.Join(vaultDir, "secrets.d")
 
-	exists, _ := afero.DirExists(cli.fs, secretsDir)
+	exists, err := afero.DirExists(cli.fs, secretsDir)
+	if err != nil {
+		return false, fmt.Errorf("failed to check secrets directory %s: %w",
+			secretsDir, err)
+	}
+
 	if !exists {
-		return false
+		return false, nil
 	}
 
 	entries, err := afero.ReadDir(cli.fs, secretsDir)
+	if err != nil {
+		return false, fmt.Errorf("failed to read secrets directory %s: %w",
+			secretsDir, err)
+	}
 
-	return err == nil && len(entries) > 0
+	return len(entries) > 0, nil
 }
 
 // switchAwayFromVault selects another vault as current before removal
@@ -600,7 +613,8 @@ func (cli *Instance) switchAwayFromVault(
 	return nil
 }
 
-// RemoveVault removes a vault with safety checks
+// RemoveVault removes a vault, holding the state directory lock while
+// removeVault runs
 func (cli *Instance) RemoveVault(cmd *cobra.Command, name string, force bool) error {
 	release, err := vault.LockStateDir(cli.fs, cli.stateDir)
 	if err != nil {
@@ -608,6 +622,11 @@ func (cli *Instance) RemoveVault(cmd *cobra.Command, name string, force bool) er
 	}
 	defer release()
 
+	return cli.removeVault(cmd, name, force)
+}
+
+// removeVault removes a vault with safety checks
+func (cli *Instance) removeVault(cmd *cobra.Command, name string, force bool) error {
 	// Get list of all vaults
 	vaults, err := vault.ListVaults(cli.fs, cli.stateDir)
 	if err != nil {
@@ -641,7 +660,10 @@ func (cli *Instance) RemoveVault(cmd *cobra.Command, name string, force bool) er
 	}
 
 	// Check if vault has secrets
-	hasSecrets := cli.vaultHasSecrets(vaultDir)
+	hasSecrets, err := cli.vaultHasSecrets(vaultDir)
+	if err != nil {
+		return err
+	}
 
 	// Require --force if vault has secrets
 	if hasSecrets && !force {

internal/vault/vault.go

@@ -138,7 +138,12 @@ func (v *Vault) NumSecrets() (int, error) {
 
 	secretsDir := filepath.Join(vaultDir, "secrets.d")
 
-	exists, _ := afero.DirExists(v.fs, secretsDir)
+	exists, err := afero.DirExists(v.fs, secretsDir)
+	if err != nil {
+		return 0, fmt.Errorf("failed to check secrets directory %s: %w",
+			secretsDir, err)
+	}
+
 	if !exists {
 		return 0, nil
 	}
@@ -162,7 +167,7 @@ func (v *Vault) NumSecrets() (int, error) {
 
 		exists, err := afero.Exists(v.fs, currentFile)
 		if err != nil {
-			continue // Skip directories we can't read
+			return 0, fmt.Errorf("failed to check %s: %w", currentFile, err)
 		}
 
 		if exists {