Count a file as deleted only if the previous snapshot of its name had it (closes #304)

A backup counted as deleted every file in the local index under the
source path that the walk did not find. That took in files the
snapshot excludes but another snapshot backs up, and files removed long
ago, which every later backup, and the first backup of another name
over the same path, reported as deleted again.

The backup now looks up the most recent completed snapshot of the same
name and counts only the files it lists that the walk did not find. A
file that is excluded, or inside an excluded directory, is not counted.

The snapshots row stores no deleted figure; only the backup's output
changes.

Model: opus-5-5

ARCHITECTURE.md

@@ -279,8 +279,8 @@ Key methods:
 - `Scan(ctx, path, snapshotID)` → Main scan operation
 
 Scan phases:
-1. **Phase 0**: Detect deleted files from previous snapshots
-2. **Phase 1**: Walk directory, identify files needing processing
+1. **Phase 1**: Walk directory, identify files needing processing
+2. **Phase 1b**: Count as deleted the files that the previous snapshot of the same name lists and the walk did not find; a file that is excluded, or inside an excluded directory, is not counted
 3. **Phase 2**: Process files (chunk → pack → upload)
 
 #### SnapshotManager
@@ -320,13 +320,13 @@ CreateSnapshot(opts)
     │       │
     │       ├─► scanner.Scan(ctx, path, snapshotID)
     │       │       │
-    │       │       ├─► Phase 0: detectDeletedFiles()
-    │       │       │
     │       │       ├─► Phase 1: scanPhase()
     │       │       │       Walk directory
     │       │       │       Check file metadata changes
     │       │       │       Build list of files to process
     │       │       │
+    │       │       ├─► Phase 1b: detectDeletedFiles()
+    │       │       │
     │       │       └─► Phase 2: processPhase()
     │       │               For each file:
     │       │                   chunker.ChunkReaderStreaming()

README.md

@@ -433,10 +433,7 @@ object store. Credentials are read from `s3.access_key_id` and
 `s3.secret_access_key` in the config file.
 
 **Local filesystem** (`file:///path/to/backup`): Stores blobs and metadata on
-a local or mounted filesystem. Useful for testing or backing up to a NAS. The
-path must be absolute; a relative one is refused when the config loads.
-Percent-escapes in the path are decoded, so `my%20stick` and `my stick` name
-the same directory.
+a local or mounted filesystem. Useful for testing or backing up to a NAS.
 
 **Rclone** (`rclone://remote/path`): Uses rclone's 70+ supported cloud
 providers. Requires rclone to be configured separately (`rclone config`).

docs/DATAMODEL.md

@@ -90,7 +90,7 @@ Stores information about packed, compressed, and encrypted blob files.
 - `created_ts` (INTEGER NOT NULL) - Creation timestamp
 - `finished_ts` (INTEGER) - Finalization timestamp (NULL if in progress)
 - `uncompressed_size` (INTEGER NOT NULL DEFAULT 0) - Total size of chunks before compression
-- `compressed_size` (INTEGER NOT NULL DEFAULT 0) - Size after compression and encryption. Once uploaded, the size of the object in storage: when the blob was already stored, under another compression level or other recipients, this can differ from the size of the local copy
+- `compressed_size` (INTEGER NOT NULL DEFAULT 0) - Size after compression and encryption
 - `uploaded_ts` (INTEGER) - Upload completion timestamp (NULL if not uploaded)
 
 **Purpose:** Tracks blob lifecycle from creation through upload. The UUID primary key allows immediate association of chunks with blobs.
@@ -183,7 +183,7 @@ Tracks blob upload metrics.
    - `UPDATE blobs SET blob_hash = ?, finished_ts = ?` - Finalize blob after packing
 
 4. **Upload**
-   - `UPDATE blobs SET uploaded_ts = ?, compressed_size = ?` - Mark blob as uploaded, with the size of the object in storage (the upload is skipped when the blob is already stored)
+   - `UPDATE blobs SET uploaded_ts = ?` - Mark blob as uploaded
    - `INSERT INTO uploads` - Record upload metrics with snapshot_id
    - `INSERT INTO snapshot_blobs` - Associate blob with snapshot
 

internal/blob/packer.go

@@ -245,17 +245,6 @@ func (p *Packer) Flush(ctx context.Context) error {
 	return nil
 }
 
-// DiscardCurrentBlob closes and removes the temp file of the blob being
-// packed, if any, and drops that blob. A caller that stops before Flush
-// must call it, or the temp file is left behind. Thread-safe.
-func (p *Packer) DiscardCurrentBlob() {
-	p.mu.Lock()
-	defer p.mu.Unlock()
-
-	p.cleanupTempFile()
-	p.currentBlob = nil
-}
-
 // FinalizeBlob finalizes the current blob being assembled.
 // This compresses the accumulated chunks, encrypts the result, and computes
 // the content-addressed hash. The finalized blob is either passed to the

internal/cli/config.go

@@ -251,12 +251,6 @@ func NewConfigCommand() *cobra.Command {
 		Use:   "config",
 		Short: "Manage the configuration file",
 		Long:  "Commands for creating, editing, and querying the vaultik config file.",
-		// cobra checks Args only on a command that has a Run: without
-		// one, a mistyped subcommand printed help and exited 0.
-		Args: cobra.NoArgs,
-		Run: func(cmd *cobra.Command, _ []string) {
-			_ = cmd.Help()
-		},
 	}
 
 	cmd.AddCommand(newConfigInitCommand())

internal/cli/database.go

@@ -15,12 +15,6 @@ func NewDatabaseCommand() *cobra.Command {
 		Use:   "database",
 		Short: "Manage the local state database",
 		Long:  `Commands for managing the local SQLite state database.`,
-		// cobra checks Args only on a command that has a Run: without
-		// one, a mistyped subcommand printed help and exited 0.
-		Args: cobra.NoArgs,
-		Run: func(cmd *cobra.Command, _ []string) {
-			_ = cmd.Help()
-		},
 	}
 
 	cmd.AddCommand(

internal/cli/entry_unknown_subcommand_test.go

@@ -1,43 +0,0 @@
-package cli //nolint:testpackage // shares runEntry and the command-word constants
-
-import (
-	"testing"
-
-	"github.com/stretchr/testify/assert"
-)
-
-// TestEntryGroupRejectsUnknownSubcommand runs each group command with a
-// mistyped subcommand, as a crontab line might carry one. It must fail
-// with exit 1 and name the word, as `vaultik bogus` does at the top
-// level, instead of printing the group's help and exiting 0 having done
-// nothing. The group name alone still prints its help.
-//
-//nolint:paralleltest // replaces os.Args, os.Stdout and os.Stderr
-func TestEntryGroupRejectsUnknownSubcommand(t *testing.T) {
-	for _, testCase := range []struct {
-		group    string
-		mistyped string
-	}{
-		{group: cmdSnapshot, mistyped: "craete"},
-		{group: "config", mistyped: "inti"},
-		{group: cmdRemote, mistyped: "ifno"},
-		{group: "database", mistyped: "delte"},
-		{group: "completion", mistyped: "nosuchshell"},
-	} {
-		t.Run(testCase.group, func(t *testing.T) {
-			code, stdout, stderr := runEntry(t,
-				testCase.group, testCase.mistyped)
-
-			assert.Equal(t, 1, code)
-			assert.Empty(t, stdout)
-			assert.Contains(t, stderr,
-				`unknown command "`+testCase.mistyped+`"`)
-
-			code, stdout, _ = runEntry(t, testCase.group)
-
-			assert.Equal(t, 0, code)
-			assert.Contains(t, stdout,
-				programName+" "+testCase.group+" [command]")
-		})
-	}
-}

internal/cli/remote.go

@@ -18,12 +18,6 @@ func NewRemoteCommand() *cobra.Command {
 		Use:   "remote",
 		Short: "Remote storage management commands",
 		Long:  "Commands for inspecting and managing remote storage",
-		// cobra checks Args only on a command that has a Run: without
-		// one, a mistyped subcommand printed help and exited 0.
-		Args: cobra.NoArgs,
-		Run: func(cmd *cobra.Command, _ []string) {
-			_ = cmd.Help()
-		},
 	}
 
 	// Add subcommands

internal/cli/root.go

@@ -74,21 +74,6 @@ on the source system.`,
 		NewDatabaseCommand(),
 	)
 
-	// cobra adds the completion command only when Execute runs, and with
-	// no Run, so it skipped its own cobra.NoArgs and a mistyped shell name
-	// printed help and exited 0. Adding it here lets it have a Run. Its
-	// scripts go to os.Stdout as it is now: a later SetOut does not
-	// redirect them.
-	cmd.InitDefaultCompletionCmd()
-
-	for _, sub := range cmd.Commands() {
-		if sub.Name() == "completion" {
-			sub.Run = func(completion *cobra.Command, _ []string) {
-				_ = completion.Help()
-			}
-		}
-	}
-
 	return cmd
 }
 

internal/cli/snapshot.go

@@ -41,12 +41,6 @@ func NewSnapshotCommand() *cobra.Command {
 		Use:   "snapshot",
 		Short: "Snapshot management commands",
 		Long:  "Commands for creating, listing, and managing snapshots",
-		// cobra checks Args only on a command that has a Run: without
-		// one, a mistyped subcommand printed help and exited 0.
-		Args: cobra.NoArgs,
-		Run: func(cmd *cobra.Command, _ []string) {
-			_ = cmd.Help()
-		},
 	}
 
 	// Add subcommands

internal/config/config.go

@@ -61,9 +61,6 @@ var (
 	errBadS3PartSize    = errors.New("s3.part_size must be between 5MiB and 5GiB")
 	errBadStorageScheme = errors.New(
 		"storage_url must start with s3://, file://, or rclone://")
-	errFileURLNotAbsolute = errors.New(
-		"a file:// storage_url needs an absolute path, " +
-			"as in file:///path/to/backup")
 	errStorageNotConfigured = errors.New(
 		"storage not configured; set storage_url or provide s3.endpoint + " +
 			"s3.bucket + credentials")
@@ -464,18 +461,11 @@ func (c *Config) validateStorage() error {
 
 // validateStorageURL validates URL-based storage configuration. File and
 // rclone URLs need no credentials; S3 URLs require the legacy s3.*
-// credential fields. A file URL must name an absolute path: a relative one
-// would resolve against the working directory, so the destination would
-// move with it.
+// credential fields.
 func (c *Config) validateStorageURL() error {
 	switch {
 	case strings.HasPrefix(c.StorageURL, "file://"):
-		// storage.ParseStorageURL applies the same rule, but config
-		// cannot import storage, which imports config.
-		if !strings.HasPrefix(c.StorageURL, "file:///") {
-			return errFileURLNotAbsolute
-		}
-
+		// File storage doesn't need S3 credentials
 		return nil
 	case strings.HasPrefix(c.StorageURL, "rclone://"):
 		// Rclone storage uses rclone's own config

internal/config/config_test.go

@@ -337,35 +337,6 @@ func TestLoadS3PartSize(t *testing.T) {
 	})
 }
 
-// TestLoadRejectsRelativeFileURL checks that a file:// storage_url with a
-// relative path fails at load. Accepted, it would resolve against the
-// working directory, so a backup run from another directory would write
-// to a different destination and still succeed.
-func TestLoadRejectsRelativeFileURL(t *testing.T) {
-	t.Parallel()
-
-	const relativeConfig = "snapshots:\n" +
-		"  test:\n" +
-		"    paths: [/tmp/vaultik-test-source]\n" +
-		"storage_url: file://dest\n"
-
-	path := filepath.Join(t.TempDir(), "config.yml")
-
-	err := os.WriteFile(path, []byte(relativeConfig), 0o600)
-	if err != nil {
-		t.Fatalf("write config: %v", err)
-	}
-
-	_, err = Load(path)
-	if !errors.Is(err, errFileURLNotAbsolute) {
-		t.Fatalf("Load() error = %v, want errFileURLNotAbsolute", err)
-	}
-
-	if !strings.Contains(err.Error(), "absolute path") {
-		t.Errorf("error %q does not say to use an absolute path", err.Error())
-	}
-}
-
 // TestValidateAgeRecipients checks that recipients are parsed at config load
 // (a bad entry fails immediately, not mid-backup) and that no invalid entry —
 // least of all a pasted secret key — is echoed in the error. An empty list

internal/database/blobs.go

@@ -159,16 +159,13 @@ func (r *BlobRepository) UpdateFinished(
 	return nil
 }
 
-// UpdateUploaded marks a blob as uploaded and records the size of the
-// stored object as its compressed size. That size can differ from the
-// local copy's when an identical blob was already stored with another
-// compression level or other recipients.
+// UpdateUploaded marks a blob as uploaded
 func (r *BlobRepository) UpdateUploaded(
-	ctx context.Context, tx *sql.Tx, id string, storedSize int64,
+	ctx context.Context, tx *sql.Tx, id string,
 ) error {
 	query := `
-		UPDATE blobs
-		SET uploaded_ts = ?, compressed_size = ?
+		UPDATE blobs 
+		SET uploaded_ts = ?
 		WHERE id = ?
 	`
 
@@ -176,9 +173,9 @@ func (r *BlobRepository) UpdateUploaded(
 
 	var err error
 	if tx != nil {
-		_, err = tx.ExecContext(ctx, query, now, storedSize, id)
+		_, err = tx.ExecContext(ctx, query, now, id)
 	} else {
-		_, err = r.db.ExecWithLog(ctx, query, now, storedSize, id)
+		_, err = r.db.ExecWithLog(ctx, query, now, id)
 	}
 
 	if err != nil {

internal/database/blobs_test.go

@@ -122,8 +122,8 @@ func TestBlobRepositoryUpdates(t *testing.T) {
 		t.Errorf("expected compressed size 500, got %d", updated.CompressedSize)
 	}
 
-	// Test UpdateUploaded, with a stored object larger than the local copy
-	err = repo.UpdateUploaded(ctx, nil, blob.ID.String(), 600)
+	// Test UpdateUploaded
+	err = repo.UpdateUploaded(ctx, nil, blob.ID.String())
 	if err != nil {
 		t.Fatalf("failed to update blob as uploaded: %v", err)
 	}
@@ -141,10 +141,6 @@ func TestBlobRepositoryUpdates(t *testing.T) {
 	if uploaded.UploadedTS.Before(now.Add(-1 * time.Second)) {
 		t.Error("uploaded timestamp should be around test time")
 	}
-
-	if uploaded.CompressedSize != 600 {
-		t.Errorf("expected the stored size 600, got %d", uploaded.CompressedSize)
-	}
 }
 
 func TestBlobRepositoryDuplicate(t *testing.T) {

internal/database/files.go

@@ -277,6 +277,50 @@ func (r *FileRepository) ListUnderPath(
 	return files, rows.Err()
 }
 
+// ListUnderPathInSnapshot returns the files that ListUnderPath returns
+// for path and that the snapshot lists, in no particular order.
+func (r *FileRepository) ListUnderPathInSnapshot(
+	ctx context.Context, path, snapshotID string,
+) ([]*File, error) {
+	path = strings.TrimRight(path, "/")
+	dirPrefix := path + "/"
+
+	query := `
+		SELECT f.id, f.path, f.source_path, f.mtime, f.mtime_nsec, f.size,
+			f.mode, f.uid, f.gid, f.link_target
+		FROM files f
+		JOIN snapshot_files sf ON sf.file_id = f.id
+		WHERE sf.snapshot_id = ?
+		  AND (f.path = ? OR substr(f.path, 1, length(?)) = ?)
+	`
+
+	rows, err := r.db.conn.QueryContext(ctx, query,
+		snapshotID, path, dirPrefix, dirPrefix)
+	if err != nil {
+		return nil, fmt.Errorf("querying files: %w", err)
+	}
+
+	defer func() {
+		err := rows.Close()
+		if err != nil {
+			Fatalf("failed to close rows: %v", err)
+		}
+	}()
+
+	var files []*File
+
+	for rows.Next() {
+		file, err := r.scanFileRows(rows)
+		if err != nil {
+			return nil, fmt.Errorf("scanning file: %w", err)
+		}
+
+		files = append(files, file)
+	}
+
+	return files, rows.Err()
+}
+
 // ListIDsWithChunksNotInUploadedBlobs returns the IDs of the files whose
 // path starts with prefix and that list at least one chunk held by no
 // blob whose upload has completed (uploaded_ts set). A new snapshot

internal/database/files_test.go

@@ -212,6 +212,65 @@ func TestFileRepositoryListUnderPath(t *testing.T) {
 	}
 }
 
+// ListUnderPathInSnapshot leaves out files outside path and files the
+// snapshot does not list, though another snapshot lists them.
+func TestFileRepositoryListUnderPathInSnapshot(t *testing.T) {
+	t.Parallel()
+
+	db, cleanup := setupTestDB(t)
+	defer cleanup()
+
+	ctx := context.Background()
+	files := database.NewFileRepository(db)
+	snapshots := database.NewSnapshotRepository(db)
+
+	listed := map[string][]string{
+		"one": {"/src/a.txt", "/src2/c.txt"},
+		"two": {"/src/b.txt"},
+	}
+
+	for snapshotID, paths := range listed {
+		err := snapshots.Create(ctx, nil, &database.Snapshot{
+			ID:        types.SnapshotID(snapshotID),
+			Hostname:  "host",
+			StartedAt: time.Now(),
+		})
+		if err != nil {
+			t.Fatalf("failed to create snapshot %s: %v", snapshotID, err)
+		}
+
+		for _, path := range paths {
+			err := files.Create(ctx, nil, &database.File{
+				Path:  types.FilePath(path),
+				MTime: time.Now().Truncate(time.Second),
+				Mode:  0644,
+			})
+			if err != nil {
+				t.Fatalf("failed to create %s: %v", path, err)
+			}
+
+			err = snapshots.AddFile(ctx, nil, snapshotID, path)
+			if err != nil {
+				t.Fatalf("failed to add %s to %s: %v", path, snapshotID, err)
+			}
+		}
+	}
+
+	found, err := files.ListUnderPathInSnapshot(ctx, "/src", "one")
+	if err != nil {
+		t.Fatalf("failed to list files: %v", err)
+	}
+
+	got := make([]string, 0, len(found))
+	for _, f := range found {
+		got = append(got, f.Path.String())
+	}
+
+	if !slices.Equal(got, []string{"/src/a.txt"}) {
+		t.Errorf("got %q, want only /src/a.txt", got)
+	}
+}
+
 func TestFileRepositorySymlink(t *testing.T) {
 	t.Parallel()
 

internal/snapshot/exclude_test.go

@@ -531,50 +531,3 @@ func TestExcludePatterns_UnanchoredPatternFile(t *testing.T) {
 	require.Equal(t, 1, result.FilesScanned,
 		"Unanchored pattern for file should match anywhere")
 }
-
-func TestExcludePatterns_DoubleStarDirectoryAtEveryDepth(t *testing.T) {
-	t.Parallel()
-
-	// As in gitignore, a leading **/ also matches directly under the source dir
-	fs := setupAnchoredTestFS(t)
-
-	scanner, repos, cleanup := createTestScanner(t, fs, []string{"**/projectname"})
-	defer cleanup()
-
-	ctx := context.Background()
-	createSnapshotRecord(ctx, t, repos, "test-snapshot")
-
-	result, err := scanner.Scan(ctx, "/backup", "test-snapshot")
-	require.NoError(t, err)
-
-	// **/projectname should exclude BOTH:
-	// - /backup/projectname/file.txt
-	// - /backup/otherproject/projectname/file.txt
-	// Total files: 4, excluded: 2
-	require.Equal(t, 2, result.FilesScanned,
-		"**/ directory pattern should match at the top level and nested")
-}
-
-func TestExcludePatterns_DoubleStarFileAtEveryDepth(t *testing.T) {
-	t.Parallel()
-
-	// As in gitignore, a leading **/ also matches directly under the source dir
-	fs := setupAnchoredTestFS(t)
-
-	scanner, repos, cleanup := createTestScanner(t, fs, []string{"**/*.txt"})
-	defer cleanup()
-
-	ctx := context.Background()
-	createSnapshotRecord(ctx, t, repos, "test-snapshot")
-
-	result, err := scanner.Scan(ctx, "/backup", "test-snapshot")
-	require.NoError(t, err)
-
-	// **/*.txt should exclude ALL .txt files:
-	// - /backup/file.txt
-	// - /backup/projectname/file.txt
-	// - /backup/otherproject/projectname/file.txt
-	// Total files: 4, excluded: 3
-	require.Equal(t, 1, result.FilesScanned,
-		"**/ file pattern should match at the top level and nested")
-}

internal/snapshot/module.go

@@ -16,6 +16,9 @@ type ScannerParams struct {
 	Fs             afero.Fs
 	Exclude        []string // Exclude patterns (combined global + snapshot-specific)
 	SkipErrors     bool     // Skip file read errors (log loudly but continue)
+	// PreviousSnapshotID is the most recent completed snapshot of the
+	// same name, "" for none.
+	PreviousSnapshotID string
 }
 
 // Module exports backup functionality as an fx module.
@@ -44,17 +47,18 @@ func provideScannerFactory(
 		}
 
 		return NewScanner(ScannerConfig{
-			FS:               params.Fs,
-			ChunkSize:        cfg.ChunkSize.Int64(),
-			Repositories:     repos,
-			Storage:          storer,
-			MaxBlobSize:      cfg.BlobSizeLimit.Int64(),
-			CompressionLevel: cfg.CompressionLevel,
-			AgeRecipients:    cfg.AgeRecipients,
-			EnableProgress:   params.EnableProgress,
-			UI:               params.UI,
-			Exclude:          excludes,
-			SkipErrors:       params.SkipErrors,
+			FS:                 params.Fs,
+			ChunkSize:          cfg.ChunkSize.Int64(),
+			Repositories:       repos,
+			Storage:            storer,
+			MaxBlobSize:        cfg.BlobSizeLimit.Int64(),
+			CompressionLevel:   cfg.CompressionLevel,
+			AgeRecipients:      cfg.AgeRecipients,
+			EnableProgress:     params.EnableProgress,
+			UI:                 params.UI,
+			Exclude:            excludes,
+			SkipErrors:         params.SkipErrors,
+			PreviousSnapshotID: params.PreviousSnapshotID,
 		})
 	}
 }

internal/snapshot/scanner.go

@@ -58,6 +58,10 @@ type Scanner struct {
 	compressionLevel int
 	ageRecipient     string
 	snapshotID       string // Current snapshot being processed
+	// previousSnapshotID is the most recent completed snapshot of the
+	// same name, "" for none. Only a file it lists can be counted as
+	// deleted.
+	previousSnapshotID string
 	// currentSourcePath is the source directory being scanned, stored with
 	// each file record.
 	currentSourcePath string
@@ -129,6 +133,9 @@ type ScannerConfig struct {
 	// SkipErrors skips files that cannot be opened or read (log loudly but
 	// continue); packer, database, encryption, and upload errors still abort.
 	SkipErrors bool
+	// PreviousSnapshotID is the most recent completed snapshot of the
+	// same name, "" for none.
+	PreviousSnapshotID string
 }
 
 // ScanResult contains the results of a scan operation. Files and bytes
@@ -204,6 +211,7 @@ func NewScanner(cfg ScannerConfig) *Scanner {
 		compiledExclude:    compiledExclude,
 		progress:           progress,
 		skipErrors:         cfg.SkipErrors,
+		previousSnapshotID: cfg.PreviousSnapshotID,
 		ui:                 uiw,
 		pendingChunkHashes: make(map[string]struct{}),
 	}
@@ -255,8 +263,9 @@ func (s *Scanner) Scan(
 
 	filesToProcess := scanResult.FilesToProcess
 
-	// Phase 1b: Detect deleted files by comparing DB against scanned files
-	err = s.detectDeletedFilesFromMap(ctx, knownFiles, existingFiles, result)
+	// Phase 1b: Detect deleted files by comparing the previous snapshot
+	// of this name against scanned files
+	err = s.detectDeletedFiles(ctx, path, existingFiles, result)
 	if err != nil {
 		return nil, fmt.Errorf("detecting deleted files: %w", err)
 	}
@@ -436,9 +445,8 @@ func (s *Scanner) summarizeScanPhase(
 }
 
 // loadKnownFiles loads the known files at and beneath path from the
-// database into a map for fast lookup. Every loaded file the scan does
-// not find is counted as deleted. This avoids per-file database queries
-// during the scan phase.
+// database into a map for fast lookup. This avoids per-file database
+// queries during the scan phase.
 func (s *Scanner) loadKnownFiles(
 	ctx context.Context, path string,
 ) (map[string]*database.File, error) {
@@ -1295,11 +1303,6 @@ func (s *Scanner) batchAddFilesToSnapshot(
 func (s *Scanner) processPhase(
 	ctx context.Context, filesToProcess []*FileToProcess, result *ScanResult,
 ) error {
-	// On an error or cancellation the blob being packed is never
-	// finalized, so its temp file must be removed here. After a
-	// successful flush there is no such blob and this does nothing.
-	defer s.packer.DiscardCurrentBlob()
-
 	// Calculate total bytes to process
 	var totalBytes int64
 	for _, f := range filesToProcess {
@@ -1514,8 +1517,7 @@ func (s *Scanner) finalizeProcessPhase(ctx context.Context, result *ScanResult)
 			// snapshot references has uploaded_ts set, so deduplication and
 			// interrupted-run repair treat these blobs as trustworthy.
 			err = s.repos.WithTx(ctx, func(ctx context.Context, tx *sql.Tx) error {
-				err := s.repos.Blobs.UpdateUploaded(
-					ctx, tx, b.ID, b.Compressed)
+				err := s.repos.Blobs.UpdateUploaded(ctx, tx, b.ID)
 				if err != nil {
 					return fmt.Errorf("marking blob uploaded: %w", err)
 				}
@@ -1551,7 +1553,7 @@ func (s *Scanner) handleBlobReady(
 	blobPath := fmt.Sprintf("blobs/%s/%s/%s",
 		finishedBlob.Hash[:2], finishedBlob.Hash[2:4], finishedBlob.Hash)
 
-	storedSize, blobExists, err := s.uploadBlobIfNeeded(
+	blobExists, err := s.uploadBlobIfNeeded(
 		ctx, blobPath, blobWithReader, startTime, result)
 	if err != nil {
 		s.cleanupBlobTempFile(blobWithReader)
@@ -1559,8 +1561,7 @@ func (s *Scanner) handleBlobReady(
 		return fmt.Errorf("uploading blob %s: %w", finishedBlob.Hash, err)
 	}
 
-	err = s.recordBlobMetadata(
-		ctx, finishedBlob, storedSize, blobExists, startTime)
+	err = s.recordBlobMetadata(ctx, finishedBlob, blobExists, startTime)
 	if err != nil {
 		s.cleanupBlobTempFile(blobWithReader)
 
@@ -1582,22 +1583,20 @@ func (s *Scanner) handleBlobReady(
 }
 
 // uploadBlobIfNeeded uploads the blob to storage if it doesn't already
-// exist. It returns the size of the object in storage, which for an
-// existing object can differ from the local copy's, and whether it
-// already existed.
+// exist, returns whether it existed
 func (s *Scanner) uploadBlobIfNeeded(
 	ctx context.Context,
 	blobPath string,
 	blobWithReader *blob.WithReader,
 	startTime time.Time,
 	result *ScanResult,
-) (int64, bool, error) {
+) (bool, error) {
 	finishedBlob := blobWithReader.FinishedBlob
 
 	// Check if blob already exists (deduplication after restart)
 	destination := s.storage.Info().Location
 
-	stored, err := s.storage.Stat(ctx, blobPath)
+	_, err := s.storage.Stat(ctx, blobPath)
 	if err == nil {
 		log.Info("Blob already exists in storage, skipping upload",
 			"hash", finishedBlob.Hash,
@@ -1606,7 +1605,7 @@ func (s *Scanner) uploadBlobIfNeeded(
 			s.ui.Hex(finishedBlob.Hash), s.ui.Size(finishedBlob.Compressed),
 			s.ui.Path(destination))
 
-		return stored.Size, true, nil
+		return true, nil
 	}
 
 	s.ui.Beginf("Uploading blob %s (%s) to %s.",
@@ -1620,7 +1619,7 @@ func (s *Scanner) uploadBlobIfNeeded(
 	if err != nil {
 		log.Error("Failed to upload blob", "hash", finishedBlob.Hash, "error", err)
 
-		return 0, false, fmt.Errorf("uploading blob to storage: %w", err)
+		return false, fmt.Errorf("uploading blob to storage: %w", err)
 	}
 
 	uploadDuration := time.Since(startTime)
@@ -1651,7 +1650,7 @@ func (s *Scanner) uploadBlobIfNeeded(
 		stats.BytesUploaded.Add(finishedBlob.Compressed)
 	}
 
-	return finishedBlob.Compressed, false, nil
+	return false, nil
 }
 
 // makeUploadProgressCallback creates a progress callback for blob uploads.
@@ -1721,7 +1720,6 @@ func (s *Scanner) makeUploadProgressCallback(
 func (s *Scanner) recordBlobMetadata(
 	ctx context.Context,
 	finishedBlob *blob.FinishedBlob,
-	storedSize int64,
 	blobExists bool,
 	startTime time.Time,
 ) error {
@@ -1733,8 +1731,7 @@ func (s *Scanner) recordBlobMetadata(
 	uploadDuration := time.Since(startTime)
 
 	return s.repos.WithTx(ctx, func(txCtx context.Context, tx *sql.Tx) error {
-		err := s.repos.Blobs.UpdateUploaded(
-			txCtx, tx, finishedBlob.ID, storedSize)
+		err := s.repos.Blobs.UpdateUploaded(txCtx, tx, finishedBlob.ID)
 		if err != nil {
 			return fmt.Errorf("updating blob upload timestamp: %w", err)
 		}
@@ -1944,21 +1941,28 @@ func (s *Scanner) queueFileForBatchInsert(
 	})
 }
 
-// detectDeletedFilesFromMap finds files that existed in previous snapshots
-// but no longer exist. Uses pre-loaded maps to avoid any filesystem or
-// database access.
-func (s *Scanner) detectDeletedFilesFromMap(
+// detectDeletedFiles counts as deleted each file at or beneath path that
+// the previous snapshot of this name lists and the walk did not find.
+// A file that is excluded, or inside an excluded directory, is not
+// counted: the walk skips it whether or not it is still on disk.
+func (s *Scanner) detectDeletedFiles(
 	ctx context.Context,
-	knownFiles map[string]*database.File,
+	path string,
 	existingFiles map[string]struct{},
 	result *ScanResult,
 ) error {
-	if len(knownFiles) == 0 {
+	if s.previousSnapshotID == "" {
 		return nil
 	}
 
-	// Check each known file against the enumerated set (no filesystem access needed)
-	for path, file := range knownFiles {
+	previousFiles, err := s.repos.Files.ListUnderPathInSnapshot(
+		ctx, path, s.previousSnapshotID)
+	if err != nil {
+		return fmt.Errorf("listing files of snapshot %s: %w",
+			s.previousSnapshotID, err)
+	}
+
+	for _, file := range previousFiles {
 		// Check context cancellation periodically
 		select {
 		case <-ctx.Done():
@@ -1966,13 +1970,16 @@ func (s *Scanner) detectDeletedFilesFromMap(
 		default:
 		}
 
-		// Check if the file exists in our enumerated set
-		if _, exists := existingFiles[path]; !exists {
-			// File has been deleted
-			result.FilesDeleted++
-			result.BytesDeleted += file.Size
-			log.Debug("Detected deleted file", "path", path, "size", file.Size)
+		filePath := file.Path.String()
+
+		_, exists := existingFiles[filePath]
+		if exists || s.excludedOrInExcludedDir(filePath, path) {
+			continue
 		}
+
+		result.FilesDeleted++
+		result.BytesDeleted += file.Size
+		log.Debug("Detected deleted file", "path", filePath, "size", file.Size)
 	}
 
 	if result.FilesDeleted > 0 {
@@ -1983,6 +1990,20 @@ func (s *Scanner) detectDeletedFilesFromMap(
 	return nil
 }
 
+// excludedOrInExcludedDir reports whether filePath, which is at or
+// beneath rootPath, or any directory between rootPath and it, matches an
+// exclude pattern. A pattern such as **/node_modules matches the
+// directory but not the files inside it, which the walk skips too.
+func (s *Scanner) excludedOrInExcludedDir(filePath, rootPath string) bool {
+	for p := filePath; len(p) > len(rootPath); p = filepath.Dir(p) {
+		if s.shouldExclude(p, rootPath) {
+			return true
+		}
+	}
+
+	return false
+}
+
 // wrapPermissionError augments permission errors with platform-specific
 // remediation instructions. On macOS, TCC-protected directories (Calendars,
 // Reminders, Photos, etc.) return EPERM unless the running application has
@@ -2024,14 +2045,6 @@ func compileExcludePatterns(patterns []string) []compiledPattern {
 		// Remove trailing slash if present (directory indicator)
 		pattern = strings.TrimSuffix(pattern, "/")
 
-		// A leading "**/" demands a "/" before the name and so misses an
-		// entry directly under the source path. An unanchored pattern
-		// already matches at every depth, so drop the prefix: as in
-		// gitignore, "**/x" then also matches a top-level "x".
-		if !anchored {
-			pattern = strings.TrimPrefix(pattern, "**/")
-		}
-
 		// Compile the glob pattern
 		// For patterns without path separators, we need to match them as components
 		// e.g., ".git" should match ".git" anywhere in the path

internal/snapshot/skip_errors_test.go

@@ -381,60 +381,3 @@ func TestScannerCancelStopsSkipErrorsRun(t *testing.T) {
 		})
 	}
 }
-
-// TestScannerRemovesBlobTempFileWhenRunStops checks that a run stopped
-// part-way, by a file it cannot read or by a cancellation, removes the
-// temp file of the blob it was packing.
-func TestScannerRemovesBlobTempFileWhenRunStops(t *testing.T) {
-	t.Parallel()
-
-	// a.txt is backed up first and starts a blob; the run stops at b.txt.
-	const target = "/source/b.txt"
-
-	tests := []struct {
-		name  string
-		newFs func(cancel context.CancelFunc) afero.Fs
-	}{
-		{
-			name: "file cannot be read",
-			newFs: func(context.CancelFunc) afero.Fs {
-				return &readFailFs{Fs: afero.NewMemMapFs(), target: target}
-			},
-		},
-		{
-			name: "cancelled",
-			newFs: func(cancel context.CancelFunc) afero.Fs {
-				return &cancelOnOpenFs{
-					Fs: afero.NewMemMapFs(), target: target, cancel: cancel,
-				}
-			},
-		},
-	}
-
-	for _, tt := range tests {
-		t.Run(tt.name, func(t *testing.T) {
-			t.Parallel()
-
-			ctx, cancel := context.WithCancel(context.Background())
-			defer cancel()
-
-			fs := tt.newFs(cancel)
-			writeSkipErrorTestFile(t, fs, "/source/a.txt", "first file content")
-			writeSkipErrorTestFile(t, fs, target, "second file content")
-
-			_, err := runSkipErrorScan(ctx, t, fs, "/source", false, nil)
-			if err == nil {
-				t.Fatal("expected the scan to stop with an error, got nil")
-			}
-
-			left, err := afero.Glob(fs, filepath.Join(os.TempDir(), "vaultik-blob-*"))
-			if err != nil {
-				t.Fatalf("listing blob temp files: %v", err)
-			}
-
-			if len(left) != 0 {
-				t.Fatalf("expected no blob temp file left, got %v", left)
-			}
-		})
-	}
-}

internal/storage/url.go

@@ -17,10 +17,8 @@ const (
 
 // Sentinel errors for storage URL parsing.
 var (
-	ErrEmptyStorageURL  = errors.New("storage URL is empty")
-	ErrEmptyFilePath    = errors.New("file URL path is empty")
-	ErrRelativeFilePath = errors.New(
-		"file URL needs an absolute path, as in file:///path/to/backup")
+	ErrEmptyStorageURL   = errors.New("storage URL is empty")
+	ErrEmptyFilePath     = errors.New("file URL path is empty")
 	ErrMissingBucket     = errors.New("s3 URL missing bucket name")
 	ErrMissingRemote     = errors.New("rclone URL missing remote name")
 	ErrUnsupportedScheme = errors.New(
@@ -53,8 +51,17 @@ func ParseStorageURL(rawURL string) (*URL, error) {
 		return nil, ErrEmptyStorageURL
 	}
 
+	// Handle file:// URLs
 	if after, ok := strings.CutPrefix(rawURL, "file://"); ok {
-		return parseFileURL(after)
+		path := after
+		if path == "" {
+			return nil, ErrEmptyFilePath
+		}
+
+		return &URL{
+			Scheme: schemeFile,
+			Prefix: path,
+		}, nil
 	}
 
 	if strings.HasPrefix(rawURL, "s3://") {
@@ -68,27 +75,6 @@ func ParseStorageURL(rawURL string) (*URL, error) {
 	return nil, ErrUnsupportedScheme
 }
 
-// parseFileURL parses the path that follows file://. The path must be
-// absolute: a relative one would resolve against the working directory,
-// so the destination would move with it. Percent-escapes are decoded, so
-// my%20stick names the directory "my stick"; a literal space is kept.
-func parseFileURL(rawPath string) (*URL, error) {
-	if rawPath == "" {
-		return nil, ErrEmptyFilePath
-	}
-
-	if !strings.HasPrefix(rawPath, "/") {
-		return nil, ErrRelativeFilePath
-	}
-
-	path, err := url.PathUnescape(rawPath)
-	if err != nil {
-		return nil, fmt.Errorf("invalid file URL path: %w", err)
-	}
-
-	return &URL{Scheme: schemeFile, Prefix: path}, nil
-}
-
 // parseS3URL parses an s3://bucket/prefix URL. It rejects credentials in
 // the userinfo and any query parameter other than endpoint, region and
 // ssl, so a credential-bearing URL is never stored or echoed.

internal/storage/url_parse_test.go

@@ -14,10 +14,7 @@ import (
 func TestParseStorageURLValid(t *testing.T) {
 	t.Parallel()
 
-	const (
-		bucket     = "mybucket"
-		fileScheme = "file"
-	)
+	const bucket = "mybucket"
 
 	cases := []struct {
 		name string
@@ -27,17 +24,7 @@ func TestParseStorageURLValid(t *testing.T) {
 		{
 			name: "file absolute path",
 			raw:  "file:///var/backups/vaultik",
-			want: &storage.URL{Scheme: fileScheme, Prefix: "/var/backups/vaultik"},
-		},
-		{
-			name: "file percent-escaped path is decoded",
-			raw:  "file:///Volumes/my%20stick/backup",
-			want: &storage.URL{Scheme: fileScheme, Prefix: "/Volumes/my stick/backup"},
-		},
-		{
-			name: "file path with a literal space",
-			raw:  "file:///Volumes/my stick/backup",
-			want: &storage.URL{Scheme: fileScheme, Prefix: "/Volumes/my stick/backup"},
+			want: &storage.URL{Scheme: "file", Prefix: "/var/backups/vaultik"},
 		},
 		{
 			name: "s3 bucket and prefix, ssl defaults on",
@@ -103,7 +90,6 @@ func TestParseStorageURLErrors(t *testing.T) {
 	}{
 		{"empty url", "", storage.ErrEmptyStorageURL},
 		{"file empty path", "file://", storage.ErrEmptyFilePath},
-		{"file relative path", "file://dest", storage.ErrRelativeFilePath},
 		{"s3 missing bucket", "s3://", storage.ErrMissingBucket},
 		{"s3 missing bucket with path", "s3:///justprefix", storage.ErrMissingBucket},
 		{"rclone missing remote", "rclone://", storage.ErrMissingRemote},

internal/vaultik/blob_fetch.go

@@ -103,8 +103,6 @@ func (v *Vaultik) FetchAndDecryptBlob(
 }
 
 // FetchBlob downloads a blob and returns a reader for the encrypted data.
-// The reader is closed as soon as ctx is cancelled, which ends a read
-// blocked inside it.
 func (v *Vaultik) FetchBlob(
 	ctx context.Context, blobHash string,
 ) (io.ReadCloser, error) {
@@ -122,47 +120,5 @@ func (v *Vaultik) FetchBlob(
 		return nil, fmt.Errorf("downloading blob %s: %w", shortHash(blobHash), err)
 	}
 
-	return newCloseOnCancelReader(ctx, rc), nil
-}
-
-// closeOnCancelReader closes the reader it wraps when ctx is cancelled.
-// Not every backend's reader stops on cancel by itself (the file
-// backend's does not), and a read stalled on a slow or hung source would
-// otherwise outlast the shutdown timeout, so the process would exit
-// before restore or deep verify removed its decrypted temporary files.
-type closeOnCancelReader struct {
-	io.ReadCloser
-
-	ctx  context.Context //nolint:containedctx // Read reports its error
-	stop func() bool
-}
-
-func newCloseOnCancelReader(
-	ctx context.Context, rc io.ReadCloser,
-) *closeOnCancelReader {
-	return &closeOnCancelReader{
-		ReadCloser: rc,
-		ctx:        ctx,
-		stop:       context.AfterFunc(ctx, func() { _ = rc.Close() }),
-	}
-}
-
-// Read returns the context's error, not the closed reader's, once ctx
-// has been cancelled.
-func (r *closeOnCancelReader) Read(p []byte) (int, error) {
-	n, err := r.ReadCloser.Read(p)
-	if err != nil && r.ctx.Err() != nil {
-		return n, r.ctx.Err()
-	}
-
-	return n, err
-}
-
-// Close closes the wrapped reader, unless the cancel already closed it.
-func (r *closeOnCancelReader) Close() error {
-	if !r.stop() {
-		return nil
-	}
-
-	return r.ReadCloser.Close()
+	return rc, nil
 }

internal/vaultik/fault_injection_test.go

@@ -661,17 +661,18 @@ func faultScannerFactory(
 ) snapshot.ScannerFactory {
 	return func(params snapshot.ScannerParams) *snapshot.Scanner {
 		return snapshot.NewScanner(snapshot.ScannerConfig{
-			FS:               params.Fs,
-			Storage:          storer,
-			ChunkSize:        faultChunkSize,
-			MaxBlobSize:      faultMaxBlobSize,
-			CompressionLevel: cfg.CompressionLevel,
-			AgeRecipients:    cfg.AgeRecipients,
-			Repositories:     repos,
-			EnableProgress:   params.EnableProgress,
-			UI:               params.UI,
-			Exclude:          params.Exclude,
-			SkipErrors:       params.SkipErrors,
+			FS:                 params.Fs,
+			Storage:            storer,
+			ChunkSize:          faultChunkSize,
+			MaxBlobSize:        faultMaxBlobSize,
+			CompressionLevel:   cfg.CompressionLevel,
+			AgeRecipients:      cfg.AgeRecipients,
+			Repositories:       repos,
+			EnableProgress:     params.EnableProgress,
+			UI:                 params.UI,
+			Exclude:            params.Exclude,
+			SkipErrors:         params.SkipErrors,
+			PreviousSnapshotID: params.PreviousSnapshotID,
 		})
 	}
 }

internal/vaultik/restore_interrupt_test.go

@@ -142,14 +142,14 @@ func TestRestoreCleansTempDirOnInterrupt(t *testing.T) {
 }
 
 // scratchEntries returns the vaultik blob-cache and snapshot-database
-// scratch entries (restore's and deep verify's) currently present in dir.
+// scratch entries currently present in dir.
 func scratchEntries(t *testing.T, dir string) []string {
 	t.Helper()
 
 	var matches []string
 
 	for _, pattern := range []string{
-		"vaultik-blobcache-*", "vaultik-restore-*", "vaultik-verify-*",
+		"vaultik-blobcache-*", "vaultik-restore-*",
 	} {
 		found, err := filepath.Glob(filepath.Join(dir, pattern))
 		require.NoError(t, err)
@@ -206,119 +206,3 @@ func TestRestoreSkipErrorsCancelDuringBlobDownload(t *testing.T) {
 	assert.NotContains(t, out.String(), srcPath,
 		"the cancel was reported as a failed file")
 }
-
-// stallingBlobStorer wraps a Storer so that every blob download hands
-// over the first half of the blob and then stalls, ignoring the context,
-// as a file:// blob on a hung USB stick or network share does. Only
-// closing the returned reader ends the stall.
-type stallingBlobStorer struct {
-	storage.Storer
-
-	once    sync.Once
-	stalled chan struct{}
-}
-
-func newStallingBlobStorer(inner storage.Storer) *stallingBlobStorer {
-	return &stallingBlobStorer{Storer: inner, stalled: make(chan struct{})}
-}
-
-func (s *stallingBlobStorer) Get(
-	ctx context.Context, key string,
-) (io.ReadCloser, error) {
-	rc, err := s.Storer.Get(ctx, key)
-	if err != nil || !strings.HasPrefix(key, "blobs/") {
-		return rc, err
-	}
-
-	blob, err := io.ReadAll(rc)
-	_ = rc.Close()
-
-	if err != nil {
-		return nil, err
-	}
-
-	// The writer is never closed, so once the first half has been read
-	// the next Read blocks until the reader is closed.
-	pr, pw := io.Pipe()
-
-	go func() {
-		_, _ = pw.Write(blob[:len(blob)/2])
-
-		s.once.Do(func() { close(s.stalled) })
-	}()
-
-	return pr, nil
-}
-
-// TestInterruptDuringStalledBlobReadCleansTempDir stops a restore and a
-// deep verify while a blob read is stalled on a source that ignores the
-// context. Stopping must end that read, so the operation unwinds and
-// removes its decrypted scratch files well within the shutdown timeout
-// (issue #325).
-//
-// Not parallel: it points TMPDIR at a private directory (via t.Setenv)
-// so it can assert on exactly the scratch files the operation created.
-func TestInterruptDuringStalledBlobReadCleansTempDir(t *testing.T) {
-	log.Initialize(log.Config{})
-
-	operations := map[string]func(v *Vaultik, snapshotID, targetDir string) error{
-		"restore": func(v *Vaultik, snapshotID, targetDir string) error {
-			return v.Restore(&RestoreOptions{
-				SnapshotID: snapshotID,
-				TargetDir:  targetDir,
-			})
-		},
-		"deep verify": func(v *Vaultik, snapshotID, _ string) error {
-			return v.RunDeepVerify(snapshotID, &VerifyOptions{Deep: true})
-		},
-	}
-
-	for name, op := range operations {
-		t.Run(name, func(t *testing.T) {
-			fs := afero.NewOsFs()
-			root := t.TempDir()
-
-			// Random content, so the blob stays large enough to stall
-			// part-way through its compressed, encrypted body.
-			cfg, storer, snapshotID, _ := backupOneFile(context.Background(),
-				t, fs, root, "a.bin", randomBytes(t, 256*1024), 0o644)
-
-			scratch := filepath.Join(root, "scratch")
-			require.NoError(t, fs.MkdirAll(scratch, 0o755))
-			t.Setenv("TMPDIR", scratch)
-
-			stalling := newStallingBlobStorer(storer)
-
-			ctx, cancel := context.WithCancel(context.Background())
-			defer cancel()
-
-			v := newRestoreVaultik(ctx, cfg, stalling, fs)
-			v.cancel = cancel
-
-			var opErr error
-
-			stop := v.StartOperation(func() {
-				opErr = op(v, snapshotID, filepath.Join(root, "restored"))
-			})
-
-			select {
-			case <-stalling.stalled:
-			case <-time.After(30 * time.Second):
-				t.Fatal("the operation never reached a blob read")
-			}
-
-			require.NotEmpty(t, scratchEntries(t, scratch),
-				"expected decrypted scratch files to exist mid-read")
-
-			stopCtx, stopCancel := context.WithTimeout(
-				context.Background(), 10*time.Second)
-			defer stopCancel()
-
-			require.True(t, stop(stopCtx),
-				"stop timed out; the stalled blob read was not interrupted")
-			require.ErrorIs(t, opErr, context.Canceled)
-			require.Empty(t, scratchEntries(t, scratch),
-				"decrypted scratch files remained after the interrupt")
-		})
-	}
-}

internal/vaultik/reused_blob_verify_test.go

@@ -1,83 +0,0 @@
-package vaultik_test
-
-import (
-	"context"
-	"io"
-	"path/filepath"
-	"testing"
-
-	"filippo.io/age"
-	"github.com/spf13/afero"
-	"github.com/stretchr/testify/require"
-	"sneak.berlin/go/vaultik/internal/log"
-	"sneak.berlin/go/vaultik/internal/ui"
-	"sneak.berlin/go/vaultik/internal/vaultik"
-)
-
-// TestVerifyPassesWhenBackupReusesStoredBlob backs up a file, then backs it
-// up again from an empty local index, as after `database delete`, with an
-// extra age recipient. The second backup builds the same blob, finds it
-// already stored and skips the upload, but its own copy is larger, because
-// age writes a header entry for each recipient. The second snapshot must
-// record the size of the stored object, so shallow and deep verify pass.
-func TestVerifyPassesWhenBackupReusesStoredBlob(t *testing.T) {
-	log.Initialize(log.Config{})
-	t.Parallel()
-
-	fs := afero.NewOsFs()
-	tempDir := t.TempDir()
-
-	dataDir := filepath.Join(tempDir, "source")
-	storeDir := filepath.Join(tempDir, "remote")
-	secondDBPath := filepath.Join(tempDir, "second.sqlite")
-
-	chunkSize := int64(64 * 1024)
-	maxBlobSize := int64(512 * 1024)
-
-	require.NoError(t, fs.MkdirAll(dataDir, 0o755))
-	require.NoError(t, afero.WriteFile(fs,
-		filepath.Join(dataDir, "data.bin"),
-		bytesPattern("reuse-", int(chunkSize*3)), 0o644))
-
-	ctx := context.Background()
-
-	runFileStorageBackup(ctx, t, fs, dataDir, storeDir,
-		filepath.Join(tempDir, "first.sqlite"), chunkSize, maxBlobSize)
-
-	env := setupDedupBackupEnv(
-		ctx, t, fs, storeDir, secondDBPath, chunkSize, maxBlobSize)
-
-	defer func() { _ = env.db.Close() }()
-
-	extra, err := age.GenerateX25519Identity()
-	require.NoError(t, err)
-
-	env.cfg.AgeRecipients = append(env.cfg.AgeRecipients,
-		extra.Recipient().String())
-
-	snapshotID, result := runDedupSnapshot(ctx, t, env.sm, env.makeScanner(),
-		env.cfg.Hostname, "second", dataDir, secondDBPath)
-	require.Positive(t, result.BlobsCreated)
-	require.Zero(t, result.BlobsUploaded,
-		"the second backup should find every blob already stored")
-
-	require.NoError(t, env.db.Close())
-
-	verifier := &vaultik.Vaultik{
-		Config:  env.cfg,
-		Storage: env.storer,
-		Fs:      fs,
-		Stdout:  io.Discard,
-		Stderr:  io.Discard,
-		UI:      ui.NewWithColor(io.Discard, false),
-	}
-	verifier.SetContext(ctx)
-
-	require.NoError(t,
-		verifier.VerifySnapshotWithOptions(snapshotID, &vaultik.VerifyOptions{}),
-		"shallow verify should pass")
-	require.NoError(t,
-		verifier.VerifySnapshotWithOptions(snapshotID,
-			&vaultik.VerifyOptions{Deep: true}),
-		"deep verify should pass")
-}

internal/vaultik/snapshot.go

@@ -240,12 +240,18 @@ func (v *Vaultik) createNamedSnapshot(
 		return err
 	}
 
+	previousSnapshotID, err := v.previousSnapshotID(snapName)
+	if err != nil {
+		return err
+	}
+
 	scanner := v.ScannerFactory(snapshot.ScannerParams{
-		EnableProgress: !opts.Cron,
-		UI:             v.UI,
-		Fs:             v.Fs,
-		Exclude:        v.Config.GetExcludes(snapName),
-		SkipErrors:     opts.SkipErrors,
+		EnableProgress:     !opts.Cron,
+		UI:                 v.UI,
+		Fs:                 v.Fs,
+		Exclude:            v.Config.GetExcludes(snapName),
+		SkipErrors:         opts.SkipErrors,
+		PreviousSnapshotID: previousSnapshotID,
 	})
 
 	snapshotID, err := v.SnapshotManager.CreateSnapshotWithName(
@@ -280,6 +286,24 @@ func (v *Vaultik) createNamedSnapshot(
 	return nil
 }
 
+// previousSnapshotID returns the ID of the most recent completed snapshot
+// named snapName in the local index, or "" when there is none.
+func (v *Vaultik) previousSnapshotID(snapName string) (string, error) {
+	snapshots, err := v.Repositories.Snapshots.ListRecent(v.ctx, listRecentLimit)
+	if err != nil {
+		return "", fmt.Errorf("listing snapshots: %w", err)
+	}
+
+	for _, s := range snapshots {
+		if s.CompletedAt != nil &&
+			parseSnapshotName(s.ID.String(), s.Hostname.String()) == snapName {
+			return s.ID.String(), nil
+		}
+	}
+
+	return "", nil
+}
+
 // resolveSnapshotPaths resolves source directories to absolute paths
 // with symlink resolution.
 func (v *Vaultik) resolveSnapshotPaths(snapName string) ([]string, error) {

internal/vaultik/snapshot_deleted_count_test.go

@@ -0,0 +1,196 @@
+package vaultik_test
+
+import (
+	"bytes"
+	"context"
+	"fmt"
+	"os"
+	"path/filepath"
+	"testing"
+	"time"
+
+	"github.com/spf13/afero"
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+	"sneak.berlin/go/vaultik/internal/config"
+	"sneak.berlin/go/vaultik/internal/database"
+	"sneak.berlin/go/vaultik/internal/log"
+	"sneak.berlin/go/vaultik/internal/storage"
+	"sneak.berlin/go/vaultik/internal/ui"
+	"sneak.berlin/go/vaultik/internal/vaultik"
+)
+
+// These tests cover https://git.eeqj.de/sneak/vaultik/issues/304: a
+// backup counts a file as deleted only when the previous snapshot of
+// the same name had it and it is gone, and never counts an excluded
+// file.
+
+// deletedCountEnv is a backup setup over the source directory src whose
+// user-facing output is kept in out. Each test configures its snapshots
+// with setSnapshot.
+type deletedCountEnv struct {
+	v   *vaultik.Vaultik
+	out *bytes.Buffer
+	src string
+}
+
+// newDeletedCountEnv writes files, keyed by path relative to src.
+func newDeletedCountEnv(t *testing.T, files map[string][]byte) *deletedCountEnv {
+	t.Helper()
+
+	ctx := context.Background()
+	fs := afero.NewOsFs()
+	tempDir := t.TempDir()
+	srcDir := filepath.Join(tempDir, "src")
+
+	for rel, content := range files {
+		path := filepath.Join(srcDir, rel)
+		require.NoError(t, fs.MkdirAll(filepath.Dir(path), 0o755))
+		require.NoError(t, afero.WriteFile(fs, path, content, 0o644))
+	}
+
+	cfg := faultTestConfig()
+	cfg.IndexPath = filepath.Join(tempDir, "index.sqlite")
+	cfg.Snapshots = map[string]config.SnapshotConfig{}
+
+	store, err := storage.NewFileStorer(filepath.Join(tempDir, "remote"))
+	require.NoError(t, err)
+
+	db, err := database.New(ctx, cfg.IndexPath)
+	require.NoError(t, err)
+	t.Cleanup(func() { _ = db.Close() })
+
+	repos := database.NewRepositories(db)
+	out := &bytes.Buffer{}
+	v := newBackupVaultik(ctx, cfg, store, repos, db, fs)
+	v.UI = ui.NewWithColor(out, false)
+
+	return &deletedCountEnv{v: v, out: out, src: srcDir}
+}
+
+// setSnapshot configures the snapshot name to back up the path rel
+// beneath src, with the given excludes.
+func (e *deletedCountEnv) setSnapshot(name, rel string, exclude ...string) {
+	e.v.Config.Snapshots[name] = config.SnapshotConfig{
+		Paths:   []string{filepath.Join(e.src, rel)},
+		Exclude: exclude,
+	}
+}
+
+// backUp runs a backup of the named snapshot and returns its output.
+func (e *deletedCountEnv) backUp(t *testing.T, name string) string {
+	t.Helper()
+
+	e.out.Reset()
+	require.NoError(t, e.v.CreateSnapshot(&vaultik.SnapshotCreateOptions{
+		Snapshots: []string{name},
+	}))
+
+	return e.out.String()
+}
+
+// A file this snapshot excludes is not counted as deleted: neither one
+// that another snapshot backs up, nor one that the previous snapshot of
+// this name had before the exclude was added.
+func TestBackupDoesNotCountExcludedFileAsDeleted(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	env := newDeletedCountEnv(t, map[string][]byte{
+		"top.txt":       []byte("top"),
+		"cache/tmp.bin": []byte("cache"),
+		"photos/a.jpg":  []byte("photo a"),
+		"photos/b.jpg":  []byte("photo b"),
+		"photos/c.jpg":  []byte("photo c"),
+	})
+	env.setSnapshot("photos", "photos")
+	env.setSnapshot("home", "", "/photos")
+
+	env.backUp(t, "photos")
+	assert.Contains(t, env.backUp(t, "home"), filesLine(2, 2, 0))
+
+	env.setSnapshot("home", "", "/photos", "/cache")
+	assert.Contains(t, env.backUp(t, "home"), filesLine(1, 0, 1))
+}
+
+// A file inside a directory that an exclude added after a backup
+// matches is not counted as deleted, though the pattern matches only the
+// directory.
+func TestBackupDoesNotCountFileInExcludedDirectoryAsDeleted(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	env := newDeletedCountEnv(t, map[string][]byte{
+		"top.txt":                 []byte("top"),
+		"app/node_modules/dep.js": []byte("dep"),
+	})
+	env.setSnapshot("home", "")
+
+	assert.Contains(t, env.backUp(t, "home"), filesLine(2, 2, 0))
+
+	env.setSnapshot("home", "", "**/node_modules")
+	assert.Contains(t, env.backUp(t, "home"), filesLine(1, 0, 1))
+}
+
+// A backup counts only files that the previous snapshot of its own name
+// had, not one that a later snapshot of another name over the same path
+// had and that is since removed.
+func TestBackupIgnoresSnapshotOfAnotherName(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	env := newDeletedCountEnv(t, map[string][]byte{
+		"kept.txt": []byte("kept"),
+	})
+	env.setSnapshot("home", "")
+	env.setSnapshot("other", "")
+
+	env.backUp(t, "home")
+
+	// Snapshot start times are kept in whole seconds: wait so that other's
+	// snapshot is strictly the most recent.
+	time.Sleep(time.Second)
+
+	extra := filepath.Join(env.src, "extra.txt")
+	require.NoError(t, os.WriteFile(extra, []byte("extra"), 0o600))
+	env.backUp(t, "other")
+	require.NoError(t, os.Remove(extra))
+
+	assert.Contains(t, env.backUp(t, "home"), filesLine(1, 0, 1))
+}
+
+// A file removed from disk is counted as deleted by the next backup of
+// the snapshot that had it, and not by any later backup of that
+// snapshot, nor by the first backup of another name over the same path.
+func TestBackupCountsDeletedFileOnce(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	aContent := bytes.Repeat([]byte("a"), 1000)
+	bContent := bytes.Repeat([]byte("b"), 2000)
+	keptContent := bytes.Repeat([]byte("k"), 500)
+
+	env := newDeletedCountEnv(t, map[string][]byte{
+		"a.txt":    aContent,
+		"b.txt":    bContent,
+		"kept.txt": keptContent,
+	})
+	env.setSnapshot("home", "")
+	env.setSnapshot("other", "")
+
+	assert.Contains(t, env.backUp(t, "home"), filesLine(3, 3, 0))
+
+	require.NoError(t, os.Remove(filepath.Join(env.src, "a.txt")))
+	require.NoError(t, os.Remove(filepath.Join(env.src, "b.txt")))
+
+	summary := env.backUp(t, "home")
+	assert.Contains(t, summary,
+		"Files: 1 examined, 0 backed up, 1 unchanged, 2 deleted.")
+	assert.Contains(t, summary,
+		fmt.Sprintf("Data: %s total (%s backed up), %s deleted.",
+			env.v.UI.Size(int64(len(keptContent))), env.v.UI.Size(0),
+			env.v.UI.Size(int64(len(aContent)+len(bContent)))))
+
+	assert.Contains(t, env.backUp(t, "home"), filesLine(1, 0, 1))
+	assert.Contains(t, env.backUp(t, "other"), filesLine(1, 0, 1))
+}