fix: remove destructive sync from ListSnapshots

ListSnapshots() silently deleted local snapshot records not found in
remote storage. A list/read operation should not have destructive side
effects.

Changes:
- Remove the inline deletion loop from ListSnapshots() that deleted
  local snapshots not present in remote storage
- Update syncWithRemote() to use deleteSnapshotFromLocalDB() for
  proper cascade cleanup (deleting snapshot_files, snapshot_blobs,
  and snapshot_uploads before the snapshot record itself)

The sync behavior remains available via syncWithRemote(), which is
called explicitly by PurgeSnapshots().

closes #15

README.md

@@ -194,9 +194,8 @@ vaultik [--config <path>] store info
 * Requires `VAULTIK_AGE_SECRET_KEY` environment variable with age private key
 * Optional path arguments to restore specific files/directories (default: all)
 * Downloads and decrypts metadata, fetches required blobs, reconstructs files
-* Preserves file permissions, mtime, and ownership (ownership requires root)
+* Preserves file permissions, timestamps, and ownership (ownership requires root)
 * Handles symlinks and directories
-* Note: ctime cannot be restored (see [platform notes](#platform-specific-ctime-semantics))
 
 **prune**: Remove unreferenced blobs from remote storage
 * Scans all snapshots for referenced blobs
@@ -248,14 +247,11 @@ Snapshot IDs follow the format `<hostname>_<snapshot-name>_<timestamp>` (e.g., `
 CREATE TABLE files (
   id TEXT PRIMARY KEY,
   path TEXT NOT NULL UNIQUE,
-  source_path TEXT NOT NULL DEFAULT '',
   mtime INTEGER NOT NULL,
-  ctime INTEGER NOT NULL,
   size INTEGER NOT NULL,
   mode INTEGER NOT NULL,
   uid INTEGER NOT NULL,
-  gid INTEGER NOT NULL,
-  link_target TEXT
+  gid INTEGER NOT NULL
 );
 
 CREATE TABLE file_chunks (
@@ -343,25 +339,7 @@ CREATE TABLE snapshot_blobs (
 1. For each file, get ordered chunk list from file_chunks
 1. Download required blobs, decrypt, decompress
 1. Extract chunks and reconstruct files
-1. Restore permissions, mtime, uid/gid (ctime cannot be restored — see platform notes above)
-
-### platform-specific ctime semantics
-
-The `ctime` field in the files table stores a platform-dependent timestamp:
-
-* **macOS (Darwin)**: `ctime` is the file's **birth time** — when the file was
-  first created on disk. This value never changes after file creation, even if
-  the file's content or metadata is modified.
-
-* **Linux**: `ctime` is the **inode change time** — the last time the file's
-  metadata (permissions, ownership, link count, etc.) was modified. This is NOT
-  the file creation time. Linux did not expose birth time (via `statx(2)`) until
-  kernel 4.11, and Go's `syscall` package does not yet surface it.
-
-**Restore limitation**: `ctime` cannot be restored on either platform. On Linux,
-the kernel manages the inode change time and userspace cannot set it. On macOS,
-there is no standard POSIX API to set birth time. The `ctime` value is preserved
-in the snapshot database for informational/forensic purposes only.
+1. Restore permissions, mtime, uid/gid
 
 #### prune
 

internal/database/models.go

@@ -16,8 +16,8 @@ type File struct {
 	ID         types.FileID     // UUID primary key
 	Path       types.FilePath   // Absolute path of the file
 	SourcePath types.SourcePath // The source directory this file came from (for restore path stripping)
-	MTime      time.Time        // Last modification time
-	CTime      time.Time        // Creation/change time (platform-specific: birth time on macOS, inode change time on Linux)
+	MTime      time.Time
+	CTime      time.Time
 	Size       int64
 	Mode       uint32
 	UID        uint32

internal/snapshot/backup_test.go

@@ -345,9 +345,9 @@ func (b *BackupEngine) Backup(ctx context.Context, fsys fs.FS, root string) (str
 			Size:  info.Size(),
 			Mode:  uint32(info.Mode()),
 			MTime: info.ModTime(),
-			CTime: fileCTime(info), // platform-specific: birth time on macOS, inode change time on Linux
-			UID:   1000,            // Default UID for test
-			GID:   1000,            // Default GID for test
+			CTime: info.ModTime(), // Use mtime as ctime for test
+			UID:   1000,           // Default UID for test
+			GID:   1000,           // Default GID for test
 		}
 		err = b.repos.WithTx(ctx, func(ctx context.Context, tx *sql.Tx) error {
 			return b.repos.Files.Create(ctx, tx, file)

internal/snapshot/ctime_darwin.go

@@ -1,26 +0,0 @@
-package snapshot
-
-import (
-	"os"
-	"syscall"
-	"time"
-)
-
-// fileCTime returns the file creation time (birth time) on macOS.
-//
-// On macOS/Darwin, "ctime" refers to the file's birth time (when the file
-// was first created on disk). This is stored in the Birthtimespec field of
-// the syscall.Stat_t structure.
-//
-// This differs from Linux where "ctime" means inode change time (the last
-// time file metadata was modified). See ctime_linux.go for details.
-//
-// If the underlying stat information is unavailable (e.g. when using a
-// virtual filesystem like afero.MemMapFs), this falls back to mtime.
-func fileCTime(info os.FileInfo) time.Time {
-	stat, ok := info.Sys().(*syscall.Stat_t)
-	if !ok {
-		return info.ModTime()
-	}
-	return time.Unix(stat.Birthtimespec.Sec, stat.Birthtimespec.Nsec).UTC()
-}

internal/snapshot/ctime_linux.go

@@ -1,28 +0,0 @@
-package snapshot
-
-import (
-	"os"
-	"syscall"
-	"time"
-)
-
-// fileCTime returns the inode change time on Linux.
-//
-// On Linux, "ctime" refers to the inode change time — the last time the
-// file's metadata (permissions, ownership, link count, etc.) was modified.
-// This is NOT the file creation time; Linux did not expose birth time until
-// the statx(2) syscall was added in kernel 4.11, and Go's syscall package
-// does not yet surface it.
-//
-// This differs from macOS/Darwin where "ctime" means birth time (file
-// creation time). See ctime_darwin.go for details.
-//
-// If the underlying stat information is unavailable (e.g. when using a
-// virtual filesystem like afero.MemMapFs), this falls back to mtime.
-func fileCTime(info os.FileInfo) time.Time {
-	stat, ok := info.Sys().(*syscall.Stat_t)
-	if !ok {
-		return info.ModTime()
-	}
-	return time.Unix(stat.Ctim.Sec, stat.Ctim.Nsec).UTC()
-}

internal/snapshot/ctime_test.go

@@ -1,133 +0,0 @@
-package snapshot
-
-import (
-	"os"
-	"path/filepath"
-	"testing"
-	"time"
-)
-
-func TestFileCTime_RealFile(t *testing.T) {
-	// Create a temporary file
-	dir := t.TempDir()
-	path := filepath.Join(dir, "testfile.txt")
-
-	if err := os.WriteFile(path, []byte("hello"), 0644); err != nil {
-		t.Fatal(err)
-	}
-
-	info, err := os.Stat(path)
-	if err != nil {
-		t.Fatal(err)
-	}
-
-	ctime := fileCTime(info)
-
-	// ctime should be a valid time (not zero)
-	if ctime.IsZero() {
-		t.Fatal("fileCTime returned zero time")
-	}
-
-	// ctime should be close to now (within a few seconds)
-	diff := time.Since(ctime)
-	if diff < 0 || diff > 5*time.Second {
-		t.Fatalf("fileCTime returned unexpected time: %v (diff from now: %v)", ctime, diff)
-	}
-
-	// ctime should not equal mtime exactly in all cases, but for a freshly
-	// created file they should be very close
-	mtime := info.ModTime()
-	ctimeMtimeDiff := ctime.Sub(mtime)
-	if ctimeMtimeDiff < 0 {
-		ctimeMtimeDiff = -ctimeMtimeDiff
-	}
-	// For a freshly created file, ctime and mtime should be within 1 second
-	if ctimeMtimeDiff > time.Second {
-		t.Fatalf("ctime and mtime differ by too much for a new file: ctime=%v, mtime=%v, diff=%v",
-			ctime, mtime, ctimeMtimeDiff)
-	}
-}
-
-func TestFileCTime_AfterMtimeChange(t *testing.T) {
-	// Create a temporary file
-	dir := t.TempDir()
-	path := filepath.Join(dir, "testfile.txt")
-
-	if err := os.WriteFile(path, []byte("hello"), 0644); err != nil {
-		t.Fatal(err)
-	}
-
-	// Get initial ctime
-	info1, err := os.Stat(path)
-	if err != nil {
-		t.Fatal(err)
-	}
-	ctime1 := fileCTime(info1)
-
-	// Change mtime to a time in the past
-	pastTime := time.Date(2020, 1, 1, 0, 0, 0, 0, time.UTC)
-	if err := os.Chtimes(path, pastTime, pastTime); err != nil {
-		t.Fatal(err)
-	}
-
-	// Get new stats
-	info2, err := os.Stat(path)
-	if err != nil {
-		t.Fatal(err)
-	}
-	ctime2 := fileCTime(info2)
-	mtime2 := info2.ModTime()
-
-	// mtime should now be in the past
-	if mtime2.Year() != 2020 {
-		t.Fatalf("mtime not set correctly: %v", mtime2)
-	}
-
-	// On macOS: ctime (birth time) should remain unchanged since birth time
-	// doesn't change when mtime is updated.
-	// On Linux: ctime (inode change time) will be updated to ~now because
-	// changing mtime is a metadata change.
-	// Either way, ctime should NOT equal the past mtime we just set.
-	if ctime2.Equal(pastTime) {
-		t.Fatal("ctime should not equal the artificially set past mtime")
-	}
-
-	// ctime should still be a recent time (the original creation time or
-	// the metadata change time, depending on platform)
-	_ = ctime1 // used for reference; both platforms will have a recent ctime2
-	if time.Since(ctime2) > 10*time.Second {
-		t.Fatalf("ctime is unexpectedly old: %v", ctime2)
-	}
-}
-
-// TestFileCTime_NonSyscallFileInfo verifies the fallback to mtime when
-// the FileInfo doesn't have a *syscall.Stat_t (e.g. afero.MemMapFs).
-type mockFileInfo struct {
-	name    string
-	size    int64
-	mode    os.FileMode
-	modTime time.Time
-	isDir   bool
-}
-
-func (m *mockFileInfo) Name() string       { return m.name }
-func (m *mockFileInfo) Size() int64        { return m.size }
-func (m *mockFileInfo) Mode() os.FileMode  { return m.mode }
-func (m *mockFileInfo) ModTime() time.Time { return m.modTime }
-func (m *mockFileInfo) IsDir() bool        { return m.isDir }
-func (m *mockFileInfo) Sys() interface{}   { return nil } // No syscall.Stat_t
-
-func TestFileCTime_FallbackToMtime(t *testing.T) {
-	now := time.Now().UTC().Truncate(time.Second)
-	info := &mockFileInfo{
-		name:    "test.txt",
-		size:    100,
-		mode:    0644,
-		modTime: now,
-	}
-
-	ctime := fileCTime(info)
-	if !ctime.Equal(now) {
-		t.Fatalf("expected fallback to mtime %v, got %v", now, ctime)
-	}
-}

internal/snapshot/scanner.go

@@ -728,7 +728,7 @@ func (s *Scanner) checkFileInMemory(path string, info os.FileInfo, knownFiles ma
 		Path:       types.FilePath(path),
 		SourcePath: types.SourcePath(s.currentSourcePath), // Store source directory for restore path stripping
 		MTime:      info.ModTime(),
-		CTime:      fileCTime(info), // platform-specific: birth time on macOS, inode change time on Linux
+		CTime:      info.ModTime(), // afero doesn't provide ctime
 		Size:       info.Size(),
 		Mode:       uint32(info.Mode()),
 		UID:        uid,

internal/vaultik/restore.go

@@ -411,11 +411,7 @@ func (v *Vaultik) restoreDirectory(file *database.File, targetPath string, resul
 		}
 	}
 
-	// Set mtime (atime is set to mtime as a reasonable default).
-	// Note: ctime cannot be restored. On Linux, ctime (inode change time) is
-	// managed by the kernel and cannot be set by userspace. On macOS, birth
-	// time cannot be set via standard POSIX APIs. The ctime value is preserved
-	// in the snapshot database for informational purposes.
+	// Set mtime
 	if err := v.Fs.Chtimes(targetPath, file.MTime, file.MTime); err != nil {
 		log.Debug("Failed to set directory mtime", "path", targetPath, "error", err)
 	}
@@ -512,11 +508,7 @@ func (v *Vaultik) restoreRegularFile(
 		}
 	}
 
-	// Set mtime (atime is set to mtime as a reasonable default).
-	// Note: ctime cannot be restored. On Linux, ctime (inode change time) is
-	// managed by the kernel and cannot be set by userspace. On macOS, birth
-	// time cannot be set via standard POSIX APIs. The ctime value is preserved
-	// in the snapshot database for informational purposes.
+	// Set mtime
 	if err := v.Fs.Chtimes(targetPath, file.MTime, file.MTime); err != nil {
 		log.Debug("Failed to set file mtime", "path", targetPath, "error", err)
 	}

internal/vaultik/snapshot.go

@@ -361,33 +361,6 @@ func (v *Vaultik) ListSnapshots(jsonOutput bool) error {
 		localSnapshotMap[s.ID.String()] = s
 	}
 
-	// Remove local snapshots that don't exist remotely
-	for _, snapshot := range localSnapshots {
-		snapshotIDStr := snapshot.ID.String()
-		if !remoteSnapshots[snapshotIDStr] {
-			log.Info("Removing local snapshot not found in remote", "snapshot_id", snapshot.ID)
-
-			// Delete related records first to avoid foreign key constraints
-			if err := v.Repositories.Snapshots.DeleteSnapshotFiles(v.ctx, snapshotIDStr); err != nil {
-				log.Error("Failed to delete snapshot files", "snapshot_id", snapshot.ID, "error", err)
-			}
-			if err := v.Repositories.Snapshots.DeleteSnapshotBlobs(v.ctx, snapshotIDStr); err != nil {
-				log.Error("Failed to delete snapshot blobs", "snapshot_id", snapshot.ID, "error", err)
-			}
-			if err := v.Repositories.Snapshots.DeleteSnapshotUploads(v.ctx, snapshotIDStr); err != nil {
-				log.Error("Failed to delete snapshot uploads", "snapshot_id", snapshot.ID, "error", err)
-			}
-
-			// Now delete the snapshot itself
-			if err := v.Repositories.Snapshots.Delete(v.ctx, snapshotIDStr); err != nil {
-				log.Error("Failed to delete local snapshot", "snapshot_id", snapshot.ID, "error", err)
-			} else {
-				log.Info("Deleted local snapshot not found in remote", "snapshot_id", snapshot.ID)
-				delete(localSnapshotMap, snapshotIDStr)
-			}
-		}
-	}
-
 	// Build final snapshot list
 	snapshots := make([]SnapshotInfo, 0, len(remoteSnapshots))
 
@@ -802,7 +775,7 @@ func (v *Vaultik) syncWithRemote() error {
 		snapshotIDStr := snapshot.ID.String()
 		if !remoteSnapshots[snapshotIDStr] {
 			log.Info("Removing local snapshot not found in remote", "snapshot_id", snapshot.ID)
-			if err := v.Repositories.Snapshots.Delete(v.ctx, snapshotIDStr); err != nil {
+			if err := v.deleteSnapshotFromLocalDB(snapshotIDStr); err != nil {
 				log.Error("Failed to delete local snapshot", "snapshot_id", snapshot.ID, "error", err)
 			} else {
 				removedCount++