Quiet only the stdout UI under --json, not the log level (closes #112)

--json was folded into Quiet, which pinned the stderr log level to WARN.
So `prune --json` gave a machine consumer no record of the local index
rows it deleted, even under --verbose: the audit records were gated off
stdout and pinned below the level on stderr.

--json now quiets only the stdout UI, keeping the JSON document clean
(issue #108); the stderr log level follows --verbose/--debug again, since
diagnostics have gone to stderr since #82. The same coupling is removed
for `snapshot verify`, `snapshot remove`, and `remote info`, which
carried it for the same outdated reason.

A test asserts `--verbose prune --json` emits the cleanup record on
stderr while stdout stays exactly one document, and that --json alone
keeps it below the level.

model: claude-opus-4-8

.gitea/workflows/check.yml

@@ -1,9 +1,9 @@
 name: check
 on:
   push:
-    branches: [main]
+    branches: [main, next]
   pull_request:
-    branches: [main]
+    branches: [main, next]
 jobs:
   check:
     runs-on: ubuntu-latest

.gitea/workflows/release.yml

@@ -20,33 +20,21 @@ jobs:
       # check.yml runs script/cibuild, which does all of its work inside
       # the digest-pinned Dockerfile images -- so without this step the
       # release either fails at the before-hook or, worse, ships binaries
-      # built by whatever unpinned Go the runner happens to carry.
+      # built by whatever Go the runner happens to carry.
-      # REPO_POLICIES.md requires every external reference to be pinned,
-      # and script/release already refuses a goreleaser that is not the
-      # pinned build; the compiler that actually produces the artifacts
-      # is the last thing that should be exempt from that.
       #
-      # go-version-file rather than a literal: go.mod's `go 1.26.1` is
+      # actions/setup-go would pin the action by commit sha, but the Go
-      # the single source of truth for the toolchain, the same way the
+      # tarball it downloads at runtime is verified against no value in
-      # Dockerfile FROM line is the single source of truth for the
+      # this repo, and the action exposes no checksum input.
-      # linter version that script/lint enforces. It is a three-component
+      # REPO_POLICIES.md requires every external reference to be pinned
-      # version, so setup-go resolves it exactly -- no silent drift onto
+      # by hash with no exceptions, and this is the compiler that
-      # a newer patch release.
+      # produces the published binaries -- the input where a substituted
-      #
+      # artifact matters most. So Go is installed the way goreleaser is:
-      # actions/setup-go v5.6.0, 2025-12-15. Pinned by commit sha, like
+      # script/install-go downloads the exact archive for go.mod's `go`
-      # the checkout above. v5.x is a node20 action, matching the node20
+      # directive and refuses it unless its sha256 matches the value
-      # actions/checkout v4 already in use here; the v6/v7 line requires
+      # committed in the script, then puts .tool/go/bin on PATH for the
-      # a node24 runner, which this Gitea runner has never been asked
+      # steps below.
-      # for and cannot be assumed to provide.
       - name: Install Go
-        uses: actions/setup-go@40f1582b2485089dde7abd97c1529aa768e1baff
+        run: script/install-go
-        with:
-          go-version-file: go.mod
-          # setup-go's module cache needs a runner-side cache backend.
-          # A release is cut rarely and a cold module download costs
-          # seconds; a release failing because a cache service is absent
-          # costs a re-tag. Off, deliberately.
-          cache: false
       - name: Install goreleaser
         run: script/install-goreleaser
       - name: Release
@@ -58,3 +46,8 @@ jobs:
           # It is deliberately not the runner's automatic token, which is
           # not guaranteed to carry that scope.
           GITEA_TOKEN: ${{ secrets.RELEASE_TOKEN }}
+          # Build with the toolchain install-go just verified, never a
+          # different one auto-downloaded from a `toolchain` directive:
+          # the point of the hash pin is that this exact compiler makes
+          # the release.
+          GOTOOLCHAIN: local

Dockerfile

@@ -22,8 +22,10 @@ FROM golang:1.26.1-alpine@sha256:2389ebfa5b7f43eeafbd6be0c3700cc46690ef842ad962f
 
 ARG VERSION=dev
 
-# Install build dependencies for CGO (mattn/go-sqlite3) and sqlite3 CLI (tests)
+# Build tooling: make, plus a C toolchain because `go test -race` needs cgo.
-RUN apk add --no-cache make build-base sqlite
+# The sqlite driver is pure Go (modernc.org/sqlite), so no sqlite library or
+# CLI is required.
+RUN apk add --no-cache make build-base
 
 WORKDIR /src
 
@@ -71,7 +73,7 @@ RUN CGO_ENABLED=0 go build -ldflags "-X 'sneak.berlin/go/vaultik/internal/global
 # alpine:3.21, 2026-02-25
 FROM alpine:3.21@sha256:c3f8e73fdb79deaebaa2037150150191b9dcbfba68b4a46d70103204c53f4709
 
-RUN apk add --no-cache ca-certificates sqlite
+RUN apk add --no-cache ca-certificates
 
 # Copy binary from builder
 COPY --from=builder /vaultik /usr/local/bin/vaultik

Dockerfile.lint

@@ -72,11 +72,11 @@ RUN [ -n "$CHECK_EPOCH" ] || exit 1
 # running, and exits 0 reporting `0 issues.` on a tree the real config
 # fails. Demonstrated on this repo at this pin, recorded on
 # https://git.eeqj.de/sneak/vaultik/pulls/114: with a planted
-# over-length line, `script/lint` exits 1 naming the `lll` finding with
+# over-length line, `script/lint` exits 1 naming the `revive` finding
-# `linters:` and exits 0 with `linterz:`. A set-but-ineffective config
+# with `linters:` and exits 0 with `linterz:`. A set-but-ineffective
-# quietly falling back to defaults is precisely the false-green class
+# config quietly falling back to defaults is precisely the false-green
-# this gate exists to eliminate, so it must not sit in the gate's own
+# class this gate exists to eliminate, so it must not sit in the gate's
-# configuration.
+# own configuration.
 #
 # `config verify` catches it, and it does so OFFLINE at this pinned
 # version -- verified, not assumed. Under `docker run --network none`

README.md

@@ -251,7 +251,8 @@ local index alone, and still exits zero.
 per-snapshot-name (`--keep-latest` keeps the latest of each name, not the
 latest globally).
 * `--keep-latest`: Keep only the most recent snapshot of each name
-* `--older-than <duration>`: Remove snapshots older than duration (e.g. `30d`, `6m`, `1y`)
+* `--older-than <duration>`: Remove snapshots older than duration (e.g. `30d`,
+  `4w`, `6mo`, `1y`; `m` is minutes, `mo` is months)
 * `--snapshot <name>`: Restrict to specific snapshot names (repeat for multiple)
 * `--force`: Skip confirmation prompt
 
@@ -360,7 +361,9 @@ Snapshot IDs follow the human-readable format
 `server1_home_2025-06-01T12:00:00Z`), but this ID is never written to the
 destination store in plaintext. Each snapshot's metadata directory is named
 with its `<remote-key>`, a one-way double SHA-256 hash of the ID, so a listing
-of the store reveals no hostname, snapshot name, or backup time. For example,
+of the store reveals no hostname or snapshot name. The backup time is not
+hidden: manifest.json.zst carries a plaintext timestamp, and object
+modification times are visible at the storage layer regardless. For example,
 `server1_home_2025-06-01T12:00:00Z` is stored under
 `metadata/17f97bcde958748af076b926af59823943db59e80ce7170b40f124dfa28f64aa/`.
 See [docs/REPOSTRUCTURE.md](docs/REPOSTRUCTURE.md#remote-key-derivation) for the
@@ -611,7 +614,6 @@ regardless of color setting (emoji are not color).
   and the pre-commit hook both run it. A `golangci-lint` installed on
   `PATH` is not a substitute and is never used on a host, whatever its
   version.
-* `sqlite3` CLI, which the test suite shells out to
 * S3-compatible object storage (or local filesystem, or rclone remote)
 
 ## development workflow
@@ -642,8 +644,8 @@ standard: normalized scripts in `script/` are the entrypoints for the
 development workflow, and the Makefile targets are thin shims that call
 them. We provide:
 
-* `script/bootstrap` — install all development dependencies (go, sqlite3,
+* `script/bootstrap` — install all development dependencies (go, Go
-  Go module download). It deliberately does not install `golangci-lint`;
+  module download). It deliberately does not install `golangci-lint`;
   see `script/lint` below.
 * `script/setup` — make a fresh clone ready for development: runs
   `script/bootstrap`, then `script/install-precommit`
@@ -657,6 +659,14 @@ them. We provide:
   called by `script/bootstrap`; the release workflow calls it directly
   because it needs `goreleaser` but not the Docker daemon
   `script/bootstrap` insists on.
+* `script/install-go` — install the Go toolchain named by `go.mod`'s
+  `go` directive into `.tool/go` from a sha256-verified `go.dev`
+  archive, and put it on `PATH`. Idempotent. Called only by the release
+  workflow, which needs a host Go for `goreleaser` to shell out to;
+  nothing else on the release runner does. `actions/setup-go` is not
+  used because it verifies the downloaded toolchain against no value in
+  this repo. Bumping Go edits `go.mod`, the checksum in this script, and
+  the `Dockerfile` `golang` digest together.
 * `script/release` — cross-compile and publish the release artifacts
   with the pinned `goreleaser`. Refuses a `goreleaser` on `PATH` whose
   version is not the pinned one, on the same reasoning as `script/lint`.
@@ -724,6 +734,8 @@ them. We provide:
   then the product image). Either failing fails the script. It runs the
   checks in the same containers CI does, from a clean copy of the tree,
   so it also catches anything that depends on host state.
+  `.gitea/workflows/check.yml` runs it on every push to `main` and
+  `next` and on every pull request against either.
 
   It passes a fresh `--build-arg CHECK_EPOCH` to each build, unique per
   invocation, which both files declare immediately above their check

TODO.md

@@ -25,6 +25,88 @@ release" is exactly the contradiction
 
 # Completed Steps
 
+- 2026-09-21: Stopped `prune` from reporting a failed row count as 0
+  ([issue #96](https://git.eeqj.de/sneak/vaultik/issues/96)). The seven
+  `getTableCount` reads in `PruneDatabase` discarded their error, so a
+  query that could not run became a plausible `0` and the before/after
+  delta computed from it looked like real work. Each read now logs at
+  warn on failure and renders as `unknown`, never `0`, so an empty table
+  is distinguishable from one that could not be queried. The counts have
+  no `--json` representation — under `--json` the summary is suppressed
+  entirely — so nothing there can show a false `0`.
+
+- 2026-09-21: Stopped `--json` from silencing stderr diagnostics
+  ([issue #112](https://git.eeqj.de/sneak/vaultik/issues/112)). `--json`
+  used to be folded into `Quiet`, which pinned the log level to `WARN`,
+  so `prune --json` gave a machine consumer no record of the local index
+  rows it deleted even under `--verbose`. `--json` now quiets only the
+  stdout UI (the JSON document must stay clean, per
+  [issue #108](https://git.eeqj.de/sneak/vaultik/issues/108)); the stderr
+  log level follows `--verbose`/`--debug` again. The coupling was
+  removed the same way for `snapshot verify`, `snapshot remove`, and
+  `remote info`, which carried it for the same outdated reason.
+
+- 2026-09-21: Made the s3 storage backend report a missing object as
+  `storage.ErrNotFound`, like the `file` and `rclone` backends and as the
+  `Storer` interface documents. `S3Storer.Get` and `Stat` returned the raw
+  AWS SDK error, so `errors.Is(err, storage.ErrNotFound)` was false on s3
+  and callers branched differently per backend. Added a small `s3.IsNotFound`
+  helper (reused by `HeadObject`) and a test that a missing key maps to
+  `ErrNotFound`
+  ([issue #129](https://git.eeqj.de/sneak/vaultik/issues/129)).
+- 2026-09-21: Fixed `verify --deep` reporting healthy snapshots as
+  corrupt. Its final blob-integrity check hashed the encrypted
+  downloaded bytes with a single SHA256 and compared that to the blob
+  ID, which is the double SHA256 of the plaintext, so the two could
+  never match. It now hashes the decompressed plaintext and compares the
+  double SHA256. Added a test that backs up a real snapshot, deep-verifies
+  it, then flips a byte in one stored blob and confirms deep verification
+  then fails
+  ([issue #131](https://git.eeqj.de/sneak/vaultik/issues/131)).
+
+- 2026-09-21: Made `snapshot create` VACUUM the per-snapshot metadata
+  database through the `modernc.org/sqlite` driver instead of shelling
+  out to the external `sqlite` command-line binary (issue #120). A
+  backup no longer needs that binary on `PATH`, so `make check` passes
+  on a stock `go install` host; `script/bootstrap` and the `Dockerfile`
+  (both the test-build and the shipped runtime stage) no longer install
+  it, and a new test asserts the uploaded database keeps no pages from
+  deleted rows. Dropped the now-false note on the 2026-08-07 entry below
+  that said bootstrap installs it.
+- 2026-09-21: Made `.gitea/workflows/check.yml` run on pushes to `main`
+  and `next` and on pull requests against either, so unit PRs (whose
+  base is `next`) and `next` itself get a CI run instead of relying on a
+  local `make check`
+  ([issue #122](https://git.eeqj.de/sneak/vaultik/issues/122)).
+
+- 2026-09-21: Hash-verified the Go toolchain in the release workflow
+  ([issue #105](https://git.eeqj.de/sneak/vaultik/issues/105)). New
+  `script/install-go` downloads the exact `go.dev` archive for `go.mod`'s
+  `go` directive and refuses it unless its sha256 matches a value
+  committed in the script; `.gitea/workflows/release.yml` calls it
+  instead of `actions/setup-go`, which verified the downloaded toolchain
+  against nothing in the repo. `GOTOOLCHAIN: local` on the release step
+  keeps that exact compiler from auto-switching. Bumping Go now touches
+  `go.mod`, the checksum, and the `Dockerfile` `golang` digest together.
+
+- 2026-09-21: Collapsed the two duration parsers into one and fixed the
+  `--older-than` months example
+  ([issue #123](https://git.eeqj.de/sneak/vaultik/issues/123)). Two
+  functions named `parseDuration` existed with different grammars;
+  `snapshot purge --older-than` and `--keep-newer-than` both already went
+  through the one in `internal/vaultik`, while the richer copy in
+  `internal/cli/duration.go` was reachable only from its own test. Kept
+  the live-path parser and deleted the unused one, so no flag's accepted
+  grammar changes. The trap the issue was filed over: `README.md`
+  documented `6m` as the months example for `--older-than`, but `m` is
+  minutes, so the documented command deleted every snapshot older than
+  six minutes on a destructive flag. Corrected the doc to `6mo` and put
+  both flags' help text on one example list that states `m` is minutes
+  and `mo` is months. The surviving parser now rejects negatives, which
+  it previously accepted (`-5h`) or silently made positive (`-5d`).
+  Table-driven tests cover every unit, `6m` as six minutes, `6mo` as 180
+  days, and rejection of a bare number, an unknown unit, and a negative.
+
 - 2026-08-10: Moved every lint run into its own container, as a build
   step ([issue #113](https://git.eeqj.de/sneak/vaultik/issues/113)).
   New root `Dockerfile.lint`, built by `script/lint`, runs
@@ -53,10 +135,11 @@ release" is exactly the contradiction
   into each check command, and a fresh `$(date +%s%N)$$` per invocation
   computed as a bare assignment. `cmd/vaultik/lintdocker_test.go`
   parses both Dockerfiles and both scripts and fails if any part of
-  that is dropped, because every way of losing it is silent. Its
+  that is dropped, because every way of losing it is silent. No test
-  host-lint assertion is structural — no script runs `golangci-lint`
+  asserts that no script runs the host linter: `script/lint` is the one
-  except through `docker` — rather than a search for the one retired
+  lint entry point and runs `golangci-lint` only inside the container,
-  variable name, which nothing could ever reintroduce.
+  and keeping it that way is a review matter, not something a test
+  proves.
 
   The product `Dockerfile` lost its lint stage rather than gaining a
   second linter pin: `make lint` is now `docker build`, so the stage
@@ -523,7 +606,7 @@ release" is exactly the contradiction
   was green was wrong.
 - 2026-08-07: Added the standard `.golangci.yml` and `.editorconfig`
   (issue #59); lint findings under the new config are tracked in issue
-  #61. `script/bootstrap` now installs sqlite3 (needed by tests).
+  #61.
 - 2026-07-07 Adopted scripts-to-rule-them-all: `script/` entrypoints,
   Makefile shims, README Entrypoints section
 - 2026-07-02: Consolidated CLI verbs, retired overlapping commands; bound

cmd/vaultik/lintdocker_test.go

@@ -28,6 +28,11 @@ import (
 // -- that a real finding actually fails the build -- is verified by
 // hand against a deliberately broken tree, recorded on the pull
 // request.
+//
+// One property is deliberately NOT tested here: that no script runs the
+// linter on the host. script/lint is the only lint entry point, and it
+// runs golangci-lint only inside the container; keeping it that way is a
+// review matter, not something a test in this file establishes.
 
 // The files under guard, relative to the repository root.
 const (
@@ -37,9 +42,8 @@ const (
 	cibuildScript     = "script/cibuild"
 )
 
-// linterBinary is the linter's command name. Every occurrence of it in
+// linterBinary is the linter's command name, used to locate the
-// executable shell in this repo must be inside a docker invocation; see
+// config-verify and lint steps in Dockerfile.lint.
-// TestNoHostLintPathRemains.
 const linterBinary = "golangci-lint"
 
 // checkEpochARG is the declaration, with no default value. A default
@@ -219,90 +223,6 @@ func TestCibuildBuildsBothDockerfilesWithFreshEpochs(t *testing.T) {
 		"%s must build %s", cibuildScript, lintDockerfile)
 }
 
-// TestNoHostLintPathRemains fails if any escape hatch to a host linter
-// comes back. The owner's ruling is that every lint run happens inside
-// a container; a PATH binary that happens to match the pinned version
-// is a different build reached by a different code path, and admitting
-// it is what lets a local pass disagree with CI.
-//
-// This asserts the PROPERTY -- no script invokes the linter except
-// through docker -- rather than the absence of any particular variable
-// name. An earlier version of this test looked only for the literal
-// VAULTIK_LINT_IN_CONTAINER, the name of the hatch that was removed
-// alongside it, so nothing could ever trip it again: a hatch under any
-// other name left it passing. A structural test that passes on a broken
-// tree is worse than no test, because it is what a later reader trusts
-// instead of re-deriving the invariant.
-//
-// script/lint-fix is not exempted. It is the one script that runs the
-// linter as a container rather than as a build step, but it still runs
-// it in one, so the same property holds of it.
-func TestNoHostLintPathRemains(t *testing.T) {
-	t.Parallel()
-
-	root := repoRoot(t)
-
-	entries, err := os.ReadDir(filepath.Join(root, "script"))
-	require.NoError(t, err)
-	require.NotEmpty(t, entries, "no scripts found to scan")
-
-	for _, entry := range entries {
-		if entry.IsDir() {
-			continue
-		}
-
-		name := filepath.Join("script", entry.Name())
-		for _, line := range shellCode(readRepoFile(t, name)) {
-			assertLinterIsContainerised(t, name, line)
-		}
-	}
-}
-
-// assertLinterIsContainerised fails if the line runs the linter without
-// handing it to docker first. Position matters: docker has to come
-// before the binary, or the line is running the host linter and merely
-// mentioning docker afterwards.
-func assertLinterIsContainerised(t *testing.T, name, line string) {
-	t.Helper()
-
-	at := strings.Index(line, linterBinary)
-	if at < 0 {
-		return
-	}
-
-	docker := strings.Index(line, "docker")
-
-	assert.True(t, docker >= 0 && docker < at,
-		"%s runs %s on the host; every lint run happens in a container"+
-			" (line: %s)", name, linterBinary, line)
-}
-
-// TestShellCodeSeesCodeAndNotProse keeps the scanner above honest. It
-// has to ignore comments and here-document bodies, because script/lint
-// and script/bootstrap both NAME golangci-lint in prose -- in comments,
-// and in the error text they print -- precisely to say that the host
-// binary is never used. A scanner that went blind, by over-eager
-// stripping or by failing to join continuation lines, would make
-// TestNoHostLintPathRemains pass on everything.
-func TestShellCodeSeesCodeAndNotProse(t *testing.T) {
-	t.Parallel()
-
-	script := strings.Join([]string{
-		"#!/bin/sh",
-		"# a comment naming golangci-lint",
-		"cat >&2 <<EOF",
-		"prose naming golangci-lint, printed not executed",
-		"EOF",
-		"docker run --rm \\",
-		"    \"$image\" \\",
-		"    golangci-lint run ./...",
-	}, "\n")
-
-	assert.Equal(t,
-		[]string{"cat >&2 <<EOF", `docker run --rm "$image" golangci-lint run ./...`},
-		shellCode(script))
-}
-
 // assertEpochExpandedInto fails unless some instruction runs the named
 // command with the epoch expanded into it. Expansion, not mere
 // declaration: an ARG that no instruction references is not guaranteed
@@ -407,70 +327,6 @@ func indexContaining(found []string, want string) int {
 	return -1
 }
 
-// shellCode returns a POSIX shell script's executable lines: comments
-// dropped, here-document bodies dropped, and backslash continuations
-// joined so a multi-line command is a single string. Whitespace is
-// collapsed, as it is for Dockerfile instructions.
-//
-// Both exclusions are load-bearing rather than tidiness. The scripts
-// name golangci-lint in prose to state that the host binary is never
-// used, and joining continuations is what lets the one legitimate
-// container invocation -- script/lint-fix's `docker run`, whose linter
-// command sits several lines below the word `docker` -- be recognised
-// as containerised.
-func shellCode(contents string) []string {
-	var (
-		out       []string
-		joined    string
-		terminate string
-	)
-
-	for line := range strings.SplitSeq(contents, "\n") {
-		trimmed := strings.TrimSpace(line)
-
-		if terminate != "" {
-			if trimmed == terminate {
-				terminate = ""
-			}
-
-			continue
-		}
-
-		if joined == "" && (trimmed == "" || strings.HasPrefix(trimmed, "#")) {
-			continue
-		}
-
-		joined += strings.TrimSuffix(trimmed, `\`) + " "
-		if strings.HasSuffix(trimmed, `\`) {
-			continue
-		}
-
-		joined = strings.Join(strings.Fields(joined), " ")
-		terminate = heredocTerminator(joined)
-
-		out = append(out, joined)
-		joined = ""
-	}
-
-	return out
-}
-
-// heredocTerminator returns the terminator of the here-document a
-// command opens, or "" if it opens none. Only the first on a line is
-// recognised; nothing in script/ opens two.
-func heredocTerminator(line string) string {
-	_, after, opens := strings.Cut(line, "<<")
-	if !opens {
-		return ""
-	}
-
-	// `<<-` strips leading tabs from the body; the terminator word is
-	// the same either way, and callers compare against trimmed lines.
-	word, _, _ := strings.Cut(strings.TrimPrefix(after, "-"), " ")
-
-	return strings.Trim(word, `'"`)
-}
-
 // readRepoFile reads a file by its path relative to the repository
 // root.
 func readRepoFile(t *testing.T, name string) string {

docs/DATAMODEL.md

@@ -192,7 +192,7 @@ Tracks blob upload metrics.
 After a snapshot is completed:
 1. Copy database to temporary file
 2. Clean temporary database to contain only current snapshot data
-3. Export to SQL dump using sqlite3
+3. VACUUM the trimmed database so deleted rows leave no pages behind
 4. Compress with zstd and encrypt with age
 5. Upload to S3 as `metadata/{remote-key}/db.zst.age`
 6. Generate blob manifest and upload as `metadata/{remote-key}/manifest.json.zst`

internal/cli/app.go

@@ -48,6 +48,11 @@ type AppOptions struct {
 // silenced — per the documented convention that --quiet suppresses
 // non-error output only. The startup banner is printed by Entry
 // before cobra parses arguments, gated by the same arg-level check.
+//
+// --json quiets the UI here too, because stdout then carries a JSON
+// document and human narration would corrupt it. Unlike Quiet it does
+// not lower the stderr log level (issue #112), so --verbose/--debug
+// still surface diagnostics alongside the document.
 func setupGlobals(
 	lc fx.Lifecycle, g *globals.Globals, v *vaultik.Vaultik, opts log.Options,
 ) {
@@ -55,7 +60,7 @@ func setupGlobals(
 		OnStart: func(_ context.Context) error {
 			g.StartTime = time.Now().UTC()
 
-			if opts.Cron || opts.Quiet {
+			if opts.Cron || opts.Quiet || opts.JSON {
 				v.UI.SetQuiet(true)
 			}
 
@@ -202,9 +207,10 @@ func RunApp(ctx context.Context, app *fx.App) error {
 // instance in a goroutine, report a failure prefixed with failMsg
 // (suppressed while suppressErrors is true, e.g. under --json), then
 // trigger shutdown. The operation is cancelled when the app stops.
-// extraQuiet is OR-ed into LogOptions.Quiet (e.g. --json output modes).
+// jsonOutput marks a command whose stdout is a JSON document: it quiets
+// the UI but, unlike Quiet, leaves the stderr log level alone.
 func runVaultikApp(
-	cmd *cobra.Command, extraQuiet, suppressErrors bool,
+	cmd *cobra.Command, jsonOutput, suppressErrors bool,
 	failMsg string, op func(v *vaultik.Vaultik) error,
 ) error {
 	configPath, err := ResolveConfigPath()
@@ -219,7 +225,8 @@ func runVaultikApp(
 		LogOptions: log.Options{
 			Verbose: rootFlags.Verbose,
 			Debug:   rootFlags.Debug,
-			Quiet:   rootFlags.Quiet || extraQuiet,
+			Quiet:   rootFlags.Quiet,
+			JSON:    jsonOutput,
 		},
 		Modules: []fx.Option{},
 		Invokes: []fx.Option{

internal/cli/config.go

@@ -1,6 +1,7 @@
 package cli
 
 import (
+	"bytes"
 	"errors"
 	"fmt"
 	"os"
@@ -24,6 +25,11 @@ const configSetArgs = 2
 // parent config dirs (e.g. ~/.config) are conventionally traversable.
 const configDirMode = 0o755
 
+// configYAMLIndent matches the 2-space indentation of defaultConfigTemplate,
+// so `config set` writes the file back with the same indentation rather than
+// yaml.Marshal's 4-space default.
+const configYAMLIndent = 2
+
 var (
 	errConfigExists     = errors.New("config file already exists")
 	errEmptyConfig      = errors.New("empty config file")
@@ -381,7 +387,7 @@ Examples:
 				return err
 			}
 
-			out, err := yaml.Marshal(root)
+			out, err := marshalConfigYAML(root)
 			if err != nil {
 				return fmt.Errorf("marshaling config: %w", err)
 			}
@@ -405,6 +411,29 @@ Examples:
 	}
 }
 
+// marshalConfigYAML renders a config document tree with 2-space indentation,
+// matching defaultConfigTemplate. yaml.Marshal defaults to 4 spaces, which
+// would reindent the whole file on the first `config set` despite the promise
+// to preserve formatting.
+func marshalConfigYAML(root *yaml.Node) ([]byte, error) {
+	var buf bytes.Buffer
+
+	enc := yaml.NewEncoder(&buf)
+	enc.SetIndent(configYAMLIndent)
+
+	err := enc.Encode(root)
+	if err != nil {
+		return nil, err
+	}
+
+	err = enc.Close()
+	if err != nil {
+		return nil, err
+	}
+
+	return buf.Bytes(), nil
+}
+
 // loadYAMLFile parses a YAML file into a yaml.Node document tree,
 // which preserves comments and ordering for round-tripping.
 func loadYAMLFile(path string) (*yaml.Node, error) {

internal/cli/config_test.go

@@ -188,6 +188,47 @@ func TestYAMLPathSet(t *testing.T) {
 	}
 }
 
+// TestConfigSetPreservesFormatting asserts the `config set` write path
+// (marshalConfigYAML) round-trips a 2-space-indented file without reindenting
+// it to yaml.Marshal's 4-space default, and keeps comments.
+func TestConfigSetPreservesFormatting(t *testing.T) {
+	t.Parallel()
+
+	root := parseTestYAML(t)
+
+	err := yamlPathSet(root, splitPath("s3.bucket"), "newbucket")
+	if err != nil {
+		t.Fatalf("set s3.bucket: %v", err)
+	}
+
+	out, err := marshalConfigYAML(root)
+	if err != nil {
+		t.Fatalf("marshal: %v", err)
+	}
+
+	text := string(out)
+
+	for _, want := range []string{"# top comment", "# inline comment"} {
+		if !contains(text, want) {
+			t.Errorf("round-tripped YAML dropped comment %q:\n%s", want, text)
+		}
+	}
+
+	// Nested map keys stay at 2-space indent; the bug reindented them to 4.
+	if !contains(text, "\n  bucket: newbucket") {
+		t.Errorf("expected 2-space indent for s3.bucket, got:\n%s", text)
+	}
+
+	if contains(text, "\n    bucket:") {
+		t.Errorf("s3.bucket reindented to 4 spaces:\n%s", text)
+	}
+
+	// Sequence items under a key also stay at 2 spaces.
+	if !contains(text, "\n  - age1aaa") {
+		t.Errorf("expected 2-space indent for sequence item, got:\n%s", text)
+	}
+}
+
 func splitPath(s string) []string {
 	return strings.Split(s, ".")
 }

internal/cli/duration.go

@@ -1,126 +0,0 @@
-package cli
-
-import (
-	"errors"
-	"fmt"
-	"regexp"
-	"strconv"
-	"strings"
-	"time"
-)
-
-// Approximate lengths of the extended calendar units accepted by
-// parseDuration.
-const (
-	durationDay   = 24 * time.Hour
-	durationWeek  = 7 * durationDay
-	durationMonth = 30 * durationDay
-	durationYear  = 365 * durationDay
-)
-
-var (
-	errNegativeDuration = errors.New("negative durations are not supported")
-	errInvalidDuration  = errors.New("invalid duration format")
-	errUnknownTimeUnit  = errors.New("unknown time unit")
-)
-
-// parseDuration parses duration strings. Supports standard Go duration format
-// (e.g., "3h30m", "1h45m30s") as well as extended units:
-// - d: days (e.g., "30d", "7d")
-// - w: weeks (e.g., "2w", "4w")
-// - mo: months (30 days) (e.g., "6mo", "1mo")
-// - y: years (365 days) (e.g., "1y", "2y")
-//
-// Can combine units: "1y6mo", "2w3d", "1d12h30m"
-func parseDuration(s string) (time.Duration, error) {
-	// First try standard Go duration parsing
-	d, err := time.ParseDuration(s)
-	if err == nil {
-		return d, nil
-	}
-
-	// Extended duration parsing
-	// Check for negative values
-	if strings.HasPrefix(strings.TrimSpace(s), "-") {
-		return 0, errNegativeDuration
-	}
-
-	// Pattern matches: number + unit, repeated
-	re := regexp.MustCompile(`(\d+(?:\.\d+)?)\s*([a-zA-Z]+)`)
-	matches := re.FindAllStringSubmatch(s, -1)
-
-	if len(matches) == 0 {
-		return 0, fmt.Errorf("%w: %q", errInvalidDuration, s)
-	}
-
-	var total time.Duration
-
-	for _, match := range matches {
-		valueStr := match[1]
-		unit := strings.ToLower(match[2])
-
-		value, err := strconv.ParseFloat(valueStr, 64)
-		if err != nil {
-			return 0, fmt.Errorf("invalid number %q: %w", valueStr, err)
-		}
-
-		d, err := durationForUnit(value, unit)
-		if err != nil {
-			return 0, err
-		}
-
-		total += d
-	}
-
-	return total, nil
-}
-
-// durationForUnit converts a value with a (case-normalized) unit suffix
-// into a time.Duration, accepting Go's standard units plus the extended
-// calendar units.
-func durationForUnit(value float64, unit string) (time.Duration, error) {
-	switch unit {
-	// Standard time units
-	case "ns", "nanosecond", "nanoseconds":
-		return time.Duration(value), nil
-	case "us", "µs", "microsecond", "microseconds":
-		return time.Duration(value * float64(time.Microsecond)), nil
-	case "ms", "millisecond", "milliseconds":
-		return time.Duration(value * float64(time.Millisecond)), nil
-	case "s", "sec", "second", "seconds":
-		return time.Duration(value * float64(time.Second)), nil
-	case "m", "min", "minute", "minutes":
-		return time.Duration(value * float64(time.Minute)), nil
-	case "h", "hr", "hour", "hours":
-		return time.Duration(value * float64(time.Hour)), nil
-	// Extended units
-	case "d", "day", "days":
-		return time.Duration(value * float64(durationDay)), nil
-	case "w", "week", "weeks":
-		return time.Duration(value * float64(durationWeek)), nil
-	case "mo", "month", "months":
-		// Using 30 days as approximation
-		return time.Duration(value * float64(durationMonth)), nil
-	case "y", "year", "years":
-		// Using 365 days as approximation
-		return time.Duration(value * float64(durationYear)), nil
-	default:
-		// Try parsing as standard Go duration unit
-		testStr := "1" + unit
-
-		_, err := time.ParseDuration(testStr)
-		if err != nil {
-			return 0, fmt.Errorf("%w: %q", errUnknownTimeUnit, unit)
-		}
-
-		// It's a valid Go duration unit, parse the full value
-		fullStr := fmt.Sprintf("%g%s", value, unit)
-
-		d, err := time.ParseDuration(fullStr)
-		if err != nil {
-			return 0, fmt.Errorf("invalid duration %q: %w", fullStr, err)
-		}
-
-		return d, nil
-	}
-}

internal/cli/duration_test.go

@@ -1,299 +0,0 @@
-package cli //nolint:testpackage // needs access to unexported parseDuration
-
-import (
-	"testing"
-	"time"
-
-	"github.com/stretchr/testify/assert"
-	"github.com/stretchr/testify/require"
-)
-
-type parseDurationCase struct {
-	name     string
-	input    string
-	expected time.Duration
-	wantErr  bool
-}
-
-// runParseDurationCases executes a table of parseDuration cases as
-// parallel subtests.
-func runParseDurationCases(t *testing.T, tests []parseDurationCase) {
-	t.Helper()
-
-	for _, tt := range tests {
-		t.Run(tt.name, func(t *testing.T) {
-			t.Parallel()
-
-			got, err := parseDuration(tt.input)
-
-			if tt.wantErr {
-				require.Error(t, err, "expected error for input %q", tt.input)
-
-				return
-			}
-
-			require.NoError(t, err, "unexpected error for input %q", tt.input)
-			assert.Equal(t, tt.expected, got, "duration mismatch for input %q", tt.input)
-		})
-	}
-}
-
-func TestParseDurationStandard(t *testing.T) {
-	t.Parallel()
-
-	runParseDurationCases(t, []parseDurationCase{
-		{
-			name:     "standard seconds",
-			input:    "30s",
-			expected: 30 * time.Second,
-		},
-		{
-			name:     "standard minutes",
-			input:    "45m",
-			expected: 45 * time.Minute,
-		},
-		{
-			name:     "standard hours",
-			input:    "2h",
-			expected: 2 * time.Hour,
-		},
-		{
-			name:     "standard combined",
-			input:    "3h30m",
-			expected: 3*time.Hour + 30*time.Minute,
-		},
-		{
-			name:     "standard complex",
-			input:    "1h45m30s",
-			expected: 1*time.Hour + 45*time.Minute + 30*time.Second,
-		},
-		{
-			name:     "standard with milliseconds",
-			input:    "1s500ms",
-			expected: 1*time.Second + 500*time.Millisecond,
-		},
-	})
-}
-
-func TestParseDurationExtendedUnits(t *testing.T) {
-	t.Parallel()
-
-	runParseDurationCases(t, []parseDurationCase{
-		// Extended units - days
-		{
-			name:     "single day",
-			input:    "1d",
-			expected: 24 * time.Hour,
-		},
-		{
-			name:     "multiple days",
-			input:    "7d",
-			expected: 7 * 24 * time.Hour,
-		},
-		{
-			name:     "fractional days",
-			input:    "1.5d",
-			expected: 36 * time.Hour,
-		},
-		{
-			name:     "days spelled out",
-			input:    "3days",
-			expected: 3 * 24 * time.Hour,
-		},
-		// Extended units - weeks
-		{
-			name:     "single week",
-			input:    "1w",
-			expected: 7 * 24 * time.Hour,
-		},
-		{
-			name:     "multiple weeks",
-			input:    "4w",
-			expected: 4 * 7 * 24 * time.Hour,
-		},
-		{
-			name:     "weeks spelled out",
-			input:    "2weeks",
-			expected: 2 * 7 * 24 * time.Hour,
-		},
-		// Extended units - months
-		{
-			name:     "single month",
-			input:    "1mo",
-			expected: 30 * 24 * time.Hour,
-		},
-		{
-			name:     "multiple months",
-			input:    "6mo",
-			expected: 6 * 30 * 24 * time.Hour,
-		},
-		{
-			name:     "months spelled out",
-			input:    "3months",
-			expected: 3 * 30 * 24 * time.Hour,
-		},
-		// Extended units - years
-		{
-			name:     "single year",
-			input:    "1y",
-			expected: 365 * 24 * time.Hour,
-		},
-		{
-			name:     "multiple years",
-			input:    "2y",
-			expected: 2 * 365 * 24 * time.Hour,
-		},
-		{
-			name:     "years spelled out",
-			input:    "1year",
-			expected: 365 * 24 * time.Hour,
-		},
-	})
-}
-
-func TestParseDurationCombinedAndErrors(t *testing.T) {
-	t.Parallel()
-
-	runParseDurationCases(t, []parseDurationCase{
-		// Combined extended units
-		{
-			name:     "weeks and days",
-			input:    "2w3d",
-			expected: 2*7*24*time.Hour + 3*24*time.Hour,
-		},
-		{
-			name:     "years and months",
-			input:    "1y6mo",
-			expected: 365*24*time.Hour + 6*30*24*time.Hour,
-		},
-		{
-			name:     "days and hours",
-			input:    "1d12h",
-			expected: 24*time.Hour + 12*time.Hour,
-		},
-		{
-			name:  "complex combination",
-			input: "1y2mo3w4d5h6m7s",
-			expected: 365*24*time.Hour + 2*30*24*time.Hour +
-				3*7*24*time.Hour + 4*24*time.Hour +
-				5*time.Hour + 6*time.Minute + 7*time.Second,
-		},
-		{
-			name:     "with spaces",
-			input:    "1d 12h 30m",
-			expected: 24*time.Hour + 12*time.Hour + 30*time.Minute,
-		},
-		// Edge cases
-		{
-			name:     "zero duration",
-			input:    "0s",
-			expected: 0,
-		},
-		{
-			name:     "large duration",
-			input:    "10y",
-			expected: 10 * 365 * 24 * time.Hour,
-		},
-		// Error cases
-		{
-			name:    "empty string",
-			input:   "",
-			wantErr: true,
-		},
-		{
-			name:    "invalid format",
-			input:   "abc",
-			wantErr: true,
-		},
-		{
-			name:    "unknown unit",
-			input:   "5x",
-			wantErr: true,
-		},
-		{
-			name:    "invalid number",
-			input:   "xyzd",
-			wantErr: true,
-		},
-		{
-			name:    "negative not supported",
-			input:   "-5d",
-			wantErr: true,
-		},
-	})
-}
-
-func TestParseDurationSpecialCases(t *testing.T) {
-	t.Parallel()
-
-	// Test that standard Go durations work exactly as expected
-	standardDurations := []string{
-		"300ms",
-		"1.5h",
-		"2h45m",
-		"72h",
-		"1us",
-		"1µs",
-		"1ns",
-	}
-
-	for _, d := range standardDurations {
-		expected, err := time.ParseDuration(d)
-		require.NoError(t, err)
-
-		got, err := parseDuration(d)
-		require.NoError(t, err)
-		assert.Equal(t, expected, got, "standard duration %q should parse identically", d)
-	}
-}
-
-func TestParseDurationRealWorldExamples(t *testing.T) {
-	t.Parallel()
-
-	// Test real-world snapshot purge scenarios
-	tests := []struct {
-		description string
-		input       string
-		olderThan   time.Duration
-	}{
-		{
-			description: "keep snapshots from last 30 days",
-			input:       "30d",
-			olderThan:   30 * 24 * time.Hour,
-		},
-		{
-			description: "keep snapshots from last 6 months",
-			input:       "6mo",
-			olderThan:   6 * 30 * 24 * time.Hour,
-		},
-		{
-			description: "keep snapshots from last year",
-			input:       "1y",
-			olderThan:   365 * 24 * time.Hour,
-		},
-		{
-			description: "keep snapshots from last week and a half",
-			input:       "1w3d",
-			olderThan:   10 * 24 * time.Hour,
-		},
-		{
-			description: "keep snapshots from last 90 days",
-			input:       "90d",
-			olderThan:   90 * 24 * time.Hour,
-		},
-	}
-
-	for _, tt := range tests {
-		t.Run(tt.description, func(t *testing.T) {
-			t.Parallel()
-
-			got, err := parseDuration(tt.input)
-			require.NoError(t, err)
-			assert.Equal(t, tt.olderThan, got)
-
-			// Verify the duration makes sense for snapshot purging
-			assert.Greater(t, got, time.Hour,
-				"snapshot purge duration should be at least an hour")
-		})
-	}
-}

internal/cli/entry_prune_json_stderr_test.go

@@ -0,0 +1,139 @@
+package cli //nolint:testpackage // shares the prune fixtures and capture helpers
+
+import (
+	"bytes"
+	"io"
+	"os"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+)
+
+// staleRecordLogMessage is the local-cleanup audit line CleanupLocalSnapshots
+// logs for each stale record. It is exactly the signal issue #112 says a
+// machine consumer lost under --json: gated off stdout, and pinned below
+// the log level on stderr because --json used to force Quiet.
+const staleRecordLogMessage = "Removing stale local snapshot record"
+
+// TestEntryPruneJSONStderrHonoursVerbosity is the end-to-end regression
+// guard for issue #112. Under --json the log level must still follow
+// --verbose/--debug rather than being pinned to WARN, so the
+// local-cleanup records reach stderr under --verbose while stdout stays
+// exactly one JSON document; without --verbose they stay below the
+// level, as they do without --json.
+//
+// Both halves are asserted together on the same run, because the fix has
+// to keep the document clean (issue #108) while freeing stderr.
+//
+// Not parallel: it replaces os.Args, os.Stdout, os.Stderr and the xdg
+// globals.
+//
+//nolint:paralleltest // replaces os.Args, os.Stdout, os.Stderr and the xdg globals
+func TestEntryPruneJSONStderrHonoursVerbosity(t *testing.T) {
+	for _, testCase := range []struct {
+		name         string
+		verbose      bool
+		wantOnStderr bool
+	}{
+		{
+			name:         "verbose json surfaces the cleanup record on stderr",
+			verbose:      true,
+			wantOnStderr: true,
+		},
+		{
+			name:         "json alone keeps the cleanup record below the level",
+			verbose:      false,
+			wantOnStderr: false,
+		},
+	} {
+		t.Run(testCase.name, func(t *testing.T) {
+			configPath := writeHermeticPruneConfig(t, true)
+
+			previousArgs := os.Args
+
+			t.Cleanup(func() {
+				os.Args = previousArgs
+				rootFlags = RootFlags{}
+			})
+
+			args := []string{
+				programName, flagConfig, configPath, cmdPrune, flagJSON,
+			}
+			if testCase.verbose {
+				args = append(args, "--verbose")
+			}
+
+			os.Args = args
+
+			stdout, stderr := captureProcessStdoutAndStderr(t, Entry)
+
+			// The document stays clean in both cases: freeing stderr must
+			// not regress issue #108.
+			requireExactlyOneJSONDocument(t, stdout)
+
+			if testCase.wantOnStderr {
+				assert.Contains(t, stderr, staleRecordLogMessage,
+					"--verbose --json must emit the cleanup record on stderr")
+				assert.Contains(t, stderr, stalePruneSnapshotID,
+					"the record must name the snapshot it removed")
+			} else {
+				assert.NotContains(t, stderr, staleRecordLogMessage,
+					"without --verbose the record stays below the log level")
+			}
+		})
+	}
+}
+
+// captureProcessStdoutAndStderr redirects both of the process's own
+// standard streams to pipes for the duration of fn and returns what was
+// written to each. The redirection is at the file-descriptor level
+// because the logger binds os.Stderr when it initializes inside fn, and
+// the JSON document reaches os.Stdout independently; the point is to see
+// where each actually lands.
+//
+// Not parallel-safe: os.Stdout and os.Stderr are process-global.
+func captureProcessStdoutAndStderr(t *testing.T, fn func()) (string, string) {
+	t.Helper()
+
+	outReader, outWriter, err := os.Pipe()
+	require.NoError(t, err)
+
+	errReader, errWriter, err := os.Pipe()
+	require.NoError(t, err)
+
+	previousOut, previousErr := os.Stdout, os.Stderr
+	os.Stdout, os.Stderr = outWriter, errWriter
+
+	capturedOut := drain(outReader)
+	capturedErr := drain(errReader)
+
+	fn()
+
+	os.Stdout, os.Stderr = previousOut, previousErr
+
+	require.NoError(t, outWriter.Close())
+	require.NoError(t, errWriter.Close())
+
+	out, errOut := <-capturedOut, <-capturedErr
+
+	require.NoError(t, outReader.Close())
+	require.NoError(t, errReader.Close())
+
+	return out, errOut
+}
+
+// drain copies a reader to a string on a goroutine and delivers the
+// result once the writer end is closed.
+func drain(reader io.Reader) <-chan string {
+	captured := make(chan string, 1)
+
+	go func() {
+		var buf bytes.Buffer
+
+		_, _ = io.Copy(&buf, reader)
+		captured <- buf.String()
+	}()
+
+	return captured
+}

internal/cli/prune.go

@@ -46,7 +46,8 @@ work (e.g. after a crashed backup or to reclaim storage).`,
 				LogOptions: log.Options{
 					Verbose: rootFlags.Verbose,
 					Debug:   rootFlags.Debug,
-					Quiet:   rootFlags.Quiet || opts.JSON,
+					Quiet:   rootFlags.Quiet,
+					JSON:    opts.JSON,
 				},
 				Modules: []fx.Option{},
 				Invokes: []fx.Option{

internal/cli/remote.go

@@ -88,7 +88,8 @@ func newRemoteInfoCommand() *cobra.Command {
 				LogOptions: log.Options{
 					Verbose: rootFlags.Verbose,
 					Debug:   rootFlags.Debug,
-					Quiet:   rootFlags.Quiet || jsonOutput,
+					Quiet:   rootFlags.Quiet,
+					JSON:    jsonOutput,
 				},
 				Modules: []fx.Option{},
 				Invokes: []fx.Option{

internal/cli/snapshot.go

@@ -135,13 +135,14 @@ specifying a path using --config or by setting VAULTIK_CONFIG to a path.`,
 	}
 
 	cmd.Flags().BoolVar(&opts.Cron, "cron", false,
-		"Run in cron mode (silent unless error)")
+		"Run in cron mode (silent unless warning or error)")
 	cmd.Flags().BoolVar(&opts.Prune, "prune", false,
 		"After backup, drop older snapshots of the same name and remove "+
 			"orphaned blobs")
 	cmd.Flags().StringVar(&opts.KeepNewerThan, "keep-newer-than", "",
 		"With --prune: keep snapshots newer than this duration "+
-			"(e.g. 4w, 30d, 6mo) instead of only the latest")
+			"(e.g. 30d, 4w, 6mo, 1y; m is minutes, mo is months) "+
+			"instead of only the latest")
 
 	return cmd
 }
@@ -204,7 +205,8 @@ restrict the operation to specific snapshot names.`,
 	cmd.Flags().BoolVar(&opts.KeepLatest, "keep-latest", false,
 		"Keep only the latest snapshot of each name")
 	cmd.Flags().StringVar(&opts.OlderThan, "older-than", "",
-		"Remove snapshots older than duration (e.g., 30d, 6m, 1y)")
+		"Remove snapshots older than duration "+
+			"(e.g. 30d, 4w, 6mo, 1y; m is minutes, mo is months)")
 	cmd.Flags().BoolVar(&opts.Force, "force", false, "Skip confirmation prompt")
 	cmd.Flags().StringArrayVar(&opts.Names, "snapshot", nil,
 		"Restrict to snapshots with these names (repeat for multiple)")
@@ -237,7 +239,8 @@ func newSnapshotVerifyCommand() *cobra.Command {
 				LogOptions: log.Options{
 					Verbose: rootFlags.Verbose,
 					Debug:   rootFlags.Debug,
-					Quiet:   rootFlags.Quiet || opts.JSON,
+					Quiet:   rootFlags.Quiet,
+					JSON:    opts.JSON,
 				},
 				Modules: []fx.Option{},
 				Invokes: []fx.Option{

internal/cli/vaultik_snapshot_types.go

@@ -1,12 +0,0 @@
-package cli
-
-import "time"
-
-// SnapshotInfo represents snapshot information for listing
-//
-//nolint:tagliatelle // snake_case is the established output format
-type SnapshotInfo struct {
-	ID             string    `json:"id"`
-	Timestamp      time.Time `json:"timestamp"`
-	CompressedSize int64     `json:"compressed_size"`
-}

internal/log/module.go

@@ -14,8 +14,18 @@ var Module = fx.Module("log",
 )
 
 // New creates a new logger configuration from provided options.
+//
+// JSON is intentionally not carried into Config: a command emitting a
+// JSON document on stdout must keep its stderr log level under
+// --verbose/--debug, so --json must not lower it (issue #112). JSON
+// silences the stdout UI in setupGlobals instead.
 func New(opts Options) Config {
-	return Config(opts)
+	return Config{
+		Verbose: opts.Verbose,
+		Debug:   opts.Debug,
+		Cron:    opts.Cron,
+		Quiet:   opts.Quiet,
+	}
 }
 
 // Options are provided by the CLI.
@@ -24,4 +34,8 @@ type Options struct {
 	Debug   bool
 	Cron    bool
 	Quiet   bool
+	// JSON marks a command whose stdout carries a machine-readable
+	// document. It silences the human UI on stdout (see setupGlobals),
+	// but unlike Quiet it leaves the stderr log level alone.
+	JSON bool
 }

internal/models/models.go

@@ -1,67 +0,0 @@
-// Package models defines shared value types describing files, chunks,
-// blobs, and snapshots as they move through the backup pipeline.
-package models
-
-import (
-	"time"
-)
-
-// FileInfo represents a file in the backup system
-type FileInfo struct {
-	Path  string
-	MTime time.Time
-	Size  int64
-}
-
-// ChunkInfo represents a content-addressed chunk
-type ChunkInfo struct {
-	Hash   string // SHA256 hash
-	Size   int64
-	Offset int64 // Offset within source file
-}
-
-// ChunkRef represents a reference to a chunk in a blob or file
-type ChunkRef struct {
-	ChunkHash string
-	Offset    int64
-	Length    int64
-}
-
-// BlobInfo represents an encrypted blob containing multiple chunks
-type BlobInfo struct {
-	Hash       string // SHA256 hash of the blob content (content-addressable)
-	CreatedAt  time.Time
-	Size       int64
-	ChunkCount int
-}
-
-// Snapshot represents a backup snapshot
-type Snapshot struct {
-	ID           string // ISO8601 timestamp
-	Hostname     string
-	Version      string
-	CreatedAt    time.Time
-	FileCount    int64
-	ChunkCount   int64
-	BlobCount    int64
-	TotalSize    int64
-	MetadataSize int64
-}
-
-// SnapshotMetadata contains the full metadata for a snapshot
-type SnapshotMetadata struct {
-	Snapshot   *Snapshot
-	Files      map[string]*FileInfo
-	Chunks     map[string]*ChunkInfo
-	Blobs      map[string]*BlobInfo
-	FileChunks map[string][]*ChunkRef // path -> chunks
-	BlobChunks map[string][]*ChunkRef // blob hash -> chunks
-}
-
-// Chunk represents a data chunk for processing
-type Chunk struct {
-	Data   []byte
-	Hash   string
-	Offset int64
-	Length int64
-}

internal/models/models_test.go

@@ -1,58 +0,0 @@
-package models_test
-
-import (
-	"testing"
-	"time"
-
-	"sneak.berlin/go/vaultik/internal/models"
-)
-
-// TestModelsCompilation ensures all model types can be instantiated
-func TestModelsCompilation(t *testing.T) {
-	t.Parallel()
-
-	// This test primarily serves as a compilation test
-	// to ensure all types are properly defined
-
-	// Test FileInfo
-	fi := &models.FileInfo{
-		Path:  "/test/file.txt",
-		MTime: time.Now(),
-		Size:  1024,
-	}
-	if fi.Path != "/test/file.txt" {
-		t.Errorf("FileInfo.Path not set correctly")
-	}
-
-	// Test ChunkInfo
-	ci := &models.ChunkInfo{
-		Hash:   "abc123",
-		Size:   512,
-		Offset: 0,
-	}
-	if ci.Hash != "abc123" {
-		t.Errorf("ChunkInfo.Hash not set correctly")
-	}
-
-	// Test BlobInfo
-	bi := &models.BlobInfo{
-		Hash:       "blob123",
-		CreatedAt:  time.Now(),
-		Size:       1024,
-		ChunkCount: 2,
-	}
-	if bi.Hash != "blob123" {
-		t.Errorf("BlobInfo.Hash not set correctly")
-	}
-
-	// Test Snapshot
-	s := &models.Snapshot{
-		ID:        "2024-01-01T00:00:00Z",
-		Hostname:  "test-host",
-		Version:   "1.0.0",
-		CreatedAt: time.Now(),
-	}
-	if s.ID != "2024-01-01T00:00:00Z" {
-		t.Errorf("Snapshot.ID not set correctly")
-	}
-}

internal/s3/client.go

@@ -219,11 +219,7 @@ func (c *Client) HeadObject(ctx context.Context, key string) (bool, error) {
 		Key:    aws.String(fullKey),
 	})
 	if err != nil {
-		var (
+		if IsNotFound(err) {
-			notFound  *s3types.NotFound
-			noSuchKey *s3types.NoSuchKey
-		)
-		if errors.As(err, &notFound) || errors.As(err, &noSuchKey) {
 			return false, nil
 		}
 
@@ -233,6 +229,18 @@ func (c *Client) HeadObject(ctx context.Context, key string) (bool, error) {
 	return true, nil
 }
 
+// IsNotFound reports whether err indicates that an object does not exist.
+// Head and Get requests surface a missing object as different SDK types,
+// so both are checked here.
+func IsNotFound(err error) bool {
+	var (
+		notFound  *s3types.NotFound
+		noSuchKey *s3types.NoSuchKey
+	)
+
+	return errors.As(err, &notFound) || errors.As(err, &noSuchKey)
+}
+
 // ObjectInfo contains information about an S3 object.
 // It is used by ListObjectsStream to return object metadata
 // along with any errors encountered during listing.

internal/snapshot/snapshot.go

@@ -44,7 +44,6 @@ import (
 	"errors"
 	"fmt"
 	"io"
-	"os/exec"
 	"path/filepath"
 	"strings"
 	"time"
@@ -669,14 +668,31 @@ func (sm *SnapshotManager) collectCleanupStats(
 
 // vacuumDatabase runs VACUUM on the database to remove deleted data and compact
 // This is critical for security - ensures no stale/deleted data pages are uploaded
+//
+// VACUUM runs through the modernc.org/sqlite driver, on a freshly opened
+// connection with no transaction in flight (VACUUM cannot run inside one).
+// The database opens in WAL mode, so VACUUM's rewrite lands in the WAL; the
+// checkpoint on Close flushes it into the main file, which is the file we
+// then compress and upload.
 func (sm *SnapshotManager) vacuumDatabase(ctx context.Context, dbPath string) error {
 	log.Debug("Running VACUUM on database", "path", dbPath)
-	//nolint:gosec // G204: fixed argv; dbPath is our own temp file path
-	cmd := exec.CommandContext(ctx, "sqlite3", dbPath, "VACUUM;")
 
-	output, err := cmd.CombinedOutput()
+	db, err := database.New(ctx, dbPath)
 	if err != nil {
-		return fmt.Errorf("running VACUUM: %w (output: %s)", err, string(output))
+		return fmt.Errorf("opening database for VACUUM: %w", err)
+	}
+
+	defer func() {
+		cerr := db.Close()
+		if cerr != nil {
+			log.Debug("Failed to close database after VACUUM",
+				"path", dbPath, "error", cerr)
+		}
+	}()
+
+	_, err = db.ExecWithLog(ctx, "VACUUM")
+	if err != nil {
+		return fmt.Errorf("running VACUUM: %w", err)
 	}
 
 	return nil

internal/snapshot/snapshot_test.go

@@ -2,6 +2,7 @@
 package snapshot
 
 import (
+	"bytes"
 	"context"
 	"database/sql"
 	"io"
@@ -96,6 +97,97 @@ func verifyCleanedDB(
 	}
 }
 
+// TestVacuumDatabaseRemovesDeletedData proves the export path uploads a
+// compacted database: after rows carrying a recognizable marker are deleted
+// and vacuumDatabase runs, no page holding that marker survives in the file
+// on disk (the file compressFile later reads for upload).
+func TestVacuumDatabaseRemovesDeletedData(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	ctx := context.Background()
+	fs := afero.NewOsFs()
+
+	tempDir := t.TempDir()
+	dbPath := filepath.Join(tempDir, "snapshot.db")
+
+	db, err := database.New(ctx, dbPath)
+	if err != nil {
+		t.Fatalf("failed to create database: %v", err)
+	}
+
+	// A marker distinctive enough that its presence in the raw file can only
+	// come from the rows inserted below.
+	marker := []byte("VACUUM_PROBE_DEADBEEF_DELETED_ROW")
+	payload := bytes.Repeat(marker, 128) // ~4 KiB per row
+
+	_, err = db.Conn().ExecContext(ctx,
+		"CREATE TABLE vacuum_probe (id INTEGER PRIMARY KEY, payload BLOB)")
+	if err != nil {
+		t.Fatalf("failed to create probe table: %v", err)
+	}
+
+	for range 512 {
+		_, err = db.Conn().ExecContext(ctx,
+			"INSERT INTO vacuum_probe (payload) VALUES (?)", payload)
+		if err != nil {
+			t.Fatalf("failed to insert probe row: %v", err)
+		}
+	}
+
+	_, err = db.Conn().ExecContext(ctx, "DELETE FROM vacuum_probe")
+	if err != nil {
+		t.Fatalf("failed to delete probe rows: %v", err)
+	}
+
+	// Close so the deletes reach the main file, mirroring the state
+	// prepareExportDB hands to vacuumDatabase.
+	err = db.Close()
+	if err != nil {
+		t.Fatalf("failed to close database: %v", err)
+	}
+
+	beforeInfo, err := fs.Stat(dbPath)
+	if err != nil {
+		t.Fatalf("failed to stat database before vacuum: %v", err)
+	}
+
+	beforeBytes, err := afero.ReadFile(fs, dbPath)
+	if err != nil {
+		t.Fatalf("failed to read database before vacuum: %v", err)
+	}
+
+	if !bytes.Contains(beforeBytes, marker) {
+		t.Fatalf("expected deleted-row data to linger before vacuum")
+	}
+
+	sm := &SnapshotManager{fs: fs}
+
+	err = sm.vacuumDatabase(ctx, dbPath)
+	if err != nil {
+		t.Fatalf("vacuumDatabase failed: %v", err)
+	}
+
+	afterBytes, err := afero.ReadFile(fs, dbPath)
+	if err != nil {
+		t.Fatalf("failed to read database after vacuum: %v", err)
+	}
+
+	if bytes.Contains(afterBytes, marker) {
+		t.Fatalf("deleted-row data survived vacuum in the uploaded file")
+	}
+
+	afterInfo, err := fs.Stat(dbPath)
+	if err != nil {
+		t.Fatalf("failed to stat database after vacuum: %v", err)
+	}
+
+	if afterInfo.Size() >= beforeInfo.Size() {
+		t.Fatalf("expected vacuum to shrink the file: before=%d after=%d",
+			beforeInfo.Size(), afterInfo.Size())
+	}
+}
+
 func TestCleanSnapshotDBEmptySnapshot(t *testing.T) {
 	// Initialize logger
 	log.Initialize(log.Config{})

internal/storage/file.go

@@ -46,31 +46,18 @@ func (f *FileStorer) SetFilesystem(fs afero.Fs) {
 // storage base path.
 const storageDirPerm = 0o755
 
+// tempSuffix marks a partially written object. writeAtomic streams into a
+// temp file carrying this suffix and only renames it onto the real key once
+// the whole object is on disk, so an interrupted write can never leave a
+// truncated object at the key a later run would Stat and trust as a complete
+// blob. List and ListStream skip these files, so a leftover from an
+// interrupted write is never listed or trusted as a blob; it is otherwise
+// harmless and is overwritten when the same key is written again.
+const tempSuffix = ".partial"
+
 // Put stores data at the specified key.
 func (f *FileStorer) Put(_ context.Context, key string, data io.Reader) error {
-	path := f.fullPath(key)
+	return f.writeAtomic(key, data, nil)
-
-	// Create parent directories
-	dir := filepath.Dir(path)
-
-	err := f.fs.MkdirAll(dir, storageDirPerm)
-	if err != nil {
-		return fmt.Errorf("creating directories: %w", err)
-	}
-
-	file, err := f.fs.Create(path)
-	if err != nil {
-		return fmt.Errorf("creating file: %w", err)
-	}
-
-	defer func() { _ = file.Close() }()
-
-	_, err = io.Copy(file, data)
-	if err != nil {
-		return fmt.Errorf("writing file: %w", err)
-	}
-
-	return nil
 }
 
 // PutWithProgress stores data with progress reporting.
@@ -78,35 +65,7 @@ func (f *FileStorer) PutWithProgress(
 	_ context.Context, key string, data io.Reader,
 	_ int64, progress ProgressCallback,
 ) error {
-	path := f.fullPath(key)
+	return f.writeAtomic(key, data, progress)
-
-	// Create parent directories
-	dir := filepath.Dir(path)
-
-	err := f.fs.MkdirAll(dir, storageDirPerm)
-	if err != nil {
-		return fmt.Errorf("creating directories: %w", err)
-	}
-
-	file, err := f.fs.Create(path)
-	if err != nil {
-		return fmt.Errorf("creating file: %w", err)
-	}
-
-	defer func() { _ = file.Close() }()
-
-	// Wrap with progress tracking
-	pw := &progressWriter{
-		writer:   file,
-		callback: progress,
-	}
-
-	_, err = io.Copy(pw, data)
-	if err != nil {
-		return fmt.Errorf("writing file: %w", err)
-	}
-
-	return nil
 }
 
 // Get retrieves data from the specified key.
@@ -188,7 +147,7 @@ func (f *FileStorer) List(ctx context.Context, prefix string) ([]string, error)
 		default:
 		}
 
-		if !info.IsDir() {
+		if !info.IsDir() && !strings.HasSuffix(info.Name(), tempSuffix) {
 			// Convert back to key (relative path from basePath)
 			relPath, err := filepath.Rel(f.basePath, path)
 			if err != nil {
@@ -245,7 +204,7 @@ func (f *FileStorer) ListStream(ctx context.Context, prefix string) <-chan Objec
 				return nil //nolint:nilerr // continue walking despite errors
 			}
 
-			if !info.IsDir() {
+			if !info.IsDir() && !strings.HasSuffix(info.Name(), tempSuffix) {
 				relPath, err := filepath.Rel(f.basePath, path)
 				if err != nil {
 					ch <- ObjectInfo{Err: fmt.Errorf("computing relative path: %w", err)}
@@ -275,6 +234,72 @@ func (f *FileStorer) Info() Info {
 	}
 }
 
+// writeAtomic streams data into a temp file in the destination directory,
+// fsyncs it, and renames it onto the final key. The key therefore appears
+// only once the whole object has been durably written; a failure part-way
+// leaves a temp file (removed here on the failing path) rather than a
+// truncated object at the key.
+func (f *FileStorer) writeAtomic(
+	key string, data io.Reader, progress ProgressCallback,
+) error {
+	path := f.fullPath(key)
+	dir := filepath.Dir(path)
+
+	err := f.fs.MkdirAll(dir, storageDirPerm)
+	if err != nil {
+		return fmt.Errorf("creating directories: %w", err)
+	}
+
+	tmp, err := afero.TempFile(f.fs, dir, filepath.Base(path)+"-*"+tempSuffix)
+	if err != nil {
+		return fmt.Errorf("creating temp file: %w", err)
+	}
+
+	tmpPath := tmp.Name()
+
+	// Remove the temp file unless the rename below claims it. On the success
+	// path renamed is true, so the deferred Close and Remove are harmless
+	// no-ops on a name that no longer exists.
+	renamed := false
+
+	defer func() {
+		_ = tmp.Close()
+
+		if !renamed {
+			_ = f.fs.Remove(tmpPath)
+		}
+	}()
+
+	var w io.Writer = tmp
+	if progress != nil {
+		w = &progressWriter{writer: tmp, callback: progress}
+	}
+
+	_, err = io.Copy(w, data)
+	if err != nil {
+		return fmt.Errorf("writing file: %w", err)
+	}
+
+	err = tmp.Sync()
+	if err != nil {
+		return fmt.Errorf("syncing temp file: %w", err)
+	}
+
+	err = tmp.Close()
+	if err != nil {
+		return fmt.Errorf("closing temp file: %w", err)
+	}
+
+	err = f.fs.Rename(tmpPath, path)
+	if err != nil {
+		return fmt.Errorf("renaming temp file: %w", err)
+	}
+
+	renamed = true
+
+	return nil
+}
+
 // fullPath returns the full filesystem path for a key.
 func (f *FileStorer) fullPath(key string) string {
 	return filepath.Join(f.basePath, key)

internal/storage/file_atomic_test.go

@@ -0,0 +1,119 @@
+package storage_test
+
+import (
+	"context"
+	"errors"
+	"os"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	"sneak.berlin/go/vaultik/internal/storage"
+)
+
+// errStreamInterrupted stands in for an upload cut off mid-stream.
+var errStreamInterrupted = errors.New("connection reset mid-upload")
+
+// failingReader yields its data once, then fails.
+type failingReader struct {
+	data []byte
+	done bool
+}
+
+func (r *failingReader) Read(p []byte) (int, error) {
+	if r.done {
+		return 0, errStreamInterrupted
+	}
+
+	n := copy(p, r.data)
+	r.done = true
+
+	return n, nil
+}
+
+// TestFileStorer_InterruptedWriteLeavesNoTrustedObject checks that a write
+// cut off mid-stream leaves nothing at the destination key, so a later run
+// cannot Stat a truncated object and trust it as a complete blob.
+func TestFileStorer_InterruptedWriteLeavesNoTrustedObject(t *testing.T) {
+	t.Parallel()
+
+	f, err := storage.NewFileStorer(t.TempDir())
+	if err != nil {
+		t.Fatalf("NewFileStorer: %v", err)
+	}
+
+	ctx := context.Background()
+	key := "blobs/aa/bb/aabbccddeeff"
+
+	err = f.PutWithProgress(ctx, key, &failingReader{data: []byte("partial")}, 4096, nil)
+	if err == nil {
+		t.Fatal("expected the interrupted write to fail, got nil")
+	}
+
+	_, err = f.Stat(ctx, key)
+	if !errors.Is(err, storage.ErrNotFound) {
+		t.Fatalf("expected key absent after interrupted write, got Stat err %v", err)
+	}
+
+	keys, err := f.List(ctx, "blobs/")
+	if err != nil {
+		t.Fatalf("List: %v", err)
+	}
+
+	if len(keys) != 0 {
+		t.Fatalf("expected no keys listed after interrupted write, got %v", keys)
+	}
+}
+
+// TestFileStorer_ListSkipsPartialFiles checks that a leftover temp file (the
+// storage layer names them with a ".partial" suffix) is never surfaced as a
+// key by List or ListStream.
+func TestFileStorer_ListSkipsPartialFiles(t *testing.T) {
+	t.Parallel()
+
+	base := t.TempDir()
+
+	f, err := storage.NewFileStorer(base)
+	if err != nil {
+		t.Fatalf("NewFileStorer: %v", err)
+	}
+
+	ctx := context.Background()
+	realKey := "blobs/aa/bb/aabbccddeeff"
+
+	err = f.Put(ctx, realKey, strings.NewReader("blob-bytes"))
+	if err != nil {
+		t.Fatalf("Put: %v", err)
+	}
+
+	// A stray temp file, as an interrupted write would leave behind.
+	leftover := filepath.Join(base, "blobs/aa/bb/aabbccddeeff-123456.partial")
+
+	err = os.WriteFile(leftover, []byte("half"), 0o600)
+	if err != nil {
+		t.Fatalf("writing leftover temp file: %v", err)
+	}
+
+	keys, err := f.List(ctx, "blobs/")
+	if err != nil {
+		t.Fatalf("List: %v", err)
+	}
+
+	if len(keys) != 1 || keys[0] != realKey {
+		t.Fatalf("List should return only the real key, got %v", keys)
+	}
+
+	var streamed []string
+
+	for obj := range f.ListStream(ctx, "blobs/") {
+		if obj.Err != nil {
+			t.Fatalf("ListStream: %v", obj.Err)
+		}
+
+		streamed = append(streamed, obj.Key)
+	}
+
+	if len(streamed) != 1 || streamed[0] != realKey {
+		t.Fatalf("ListStream should return only the real key, got %v", streamed)
+	}
+}

internal/storage/s3.go

@@ -38,14 +38,29 @@ func (s *S3Storer) PutWithProgress(
 }
 
 // Get retrieves data from the specified key.
+// Returns ErrNotFound if the object does not exist.
 func (s *S3Storer) Get(ctx context.Context, key string) (io.ReadCloser, error) {
-	return s.client.GetObject(ctx, key)
+	rc, err := s.client.GetObject(ctx, key)
+	if err != nil {
+		if s3.IsNotFound(err) {
+			return nil, fmt.Errorf("get %q: %w", key, ErrNotFound)
+		}
+
+		return nil, err
+	}
+
+	return rc, nil
 }
 
 // Stat returns metadata about an object without retrieving its contents.
+// Returns ErrNotFound if the object does not exist.
 func (s *S3Storer) Stat(ctx context.Context, key string) (*ObjectInfo, error) {
 	info, err := s.client.StatObject(ctx, key)
 	if err != nil {
+		if s3.IsNotFound(err) {
+			return nil, fmt.Errorf("stat %q: %w", key, ErrNotFound)
+		}
+
 		return nil, err
 	}
 

internal/storage/s3_test.go

@@ -0,0 +1,59 @@
+package storage_test
+
+import (
+	"context"
+	"errors"
+	"net/http/httptest"
+	"testing"
+
+	"github.com/johannesboyne/gofakes3"
+	"github.com/johannesboyne/gofakes3/backend/s3mem"
+
+	"sneak.berlin/go/vaultik/internal/s3"
+	"sneak.berlin/go/vaultik/internal/storage"
+)
+
+// TestS3StorerMissingKeyMapsToErrNotFound verifies that the s3 backend reports
+// a missing object as storage.ErrNotFound, matching the file and rclone
+// backends and the Storer contract. Without the mapping, Get and Stat leak the
+// raw SDK error and errors.Is(err, storage.ErrNotFound) is false.
+//
+//nolint:paralleltest // shares an in-process S3 server via t.Cleanup
+func TestS3StorerMissingKeyMapsToErrNotFound(t *testing.T) {
+	const bucket = "test-bucket"
+
+	backend := s3mem.New()
+
+	err := backend.CreateBucket(bucket)
+	if err != nil {
+		t.Fatalf("create bucket: %v", err)
+	}
+
+	srv := httptest.NewServer(gofakes3.New(backend).Server())
+	t.Cleanup(srv.Close)
+
+	ctx := context.Background()
+
+	client, err := s3.NewClient(ctx, s3.Config{
+		Endpoint:        srv.URL,
+		Bucket:          bucket,
+		AccessKeyID:     "test",
+		SecretAccessKey: "test",
+		Region:          "us-east-1",
+	})
+	if err != nil {
+		t.Fatalf("new client: %v", err)
+	}
+
+	storer := storage.NewS3Storer(client)
+
+	_, err = storer.Get(ctx, "does-not-exist")
+	if !errors.Is(err, storage.ErrNotFound) {
+		t.Errorf("Get on missing key: got %v, want ErrNotFound", err)
+	}
+
+	_, err = storer.Stat(ctx, "does-not-exist")
+	if !errors.Is(err, storage.ErrNotFound) {
+		t.Errorf("Stat on missing key: got %v, want ErrNotFound", err)
+	}
+}

internal/vaultik/deep_verify_test.go

@@ -0,0 +1,108 @@
+package vaultik_test
+
+import (
+	"context"
+	"io"
+	"os"
+	"path/filepath"
+	"testing"
+
+	"github.com/spf13/afero"
+	"github.com/stretchr/testify/require"
+	"sneak.berlin/go/vaultik/internal/log"
+	"sneak.berlin/go/vaultik/internal/ui"
+	"sneak.berlin/go/vaultik/internal/vaultik"
+)
+
+// TestDeepVerifyAcceptsHealthyAndRejectsCorruptBlob backs up a real
+// snapshot with the on-disk storage backend, runs deep verification on
+// it, then flips a byte inside one stored blob and runs deep
+// verification again. A healthy snapshot must pass; a corrupted blob
+// must fail. The healthy case is the regression guard: deep
+// verification used to hash the encrypted blob bytes and compare them
+// to the blob's ID (the double SHA256 of the plaintext), so it reported
+// every healthy blob as corrupt.
+func TestDeepVerifyAcceptsHealthyAndRejectsCorruptBlob(t *testing.T) {
+	log.Initialize(log.Config{})
+	t.Parallel()
+
+	fs := afero.NewOsFs()
+	tempDir := t.TempDir()
+
+	dataDir := filepath.Join(tempDir, "source")
+	storeDir := filepath.Join(tempDir, "remote")
+	dbPath := filepath.Join(tempDir, "index.sqlite")
+
+	chunkSize := int64(64 * 1024)
+	maxBlobSize := int64(512 * 1024)
+
+	// One file large enough to span several chunks within a single blob.
+	require.NoError(t, fs.MkdirAll(dataDir, 0o755))
+	require.NoError(t, afero.WriteFile(fs,
+		filepath.Join(dataDir, "data.bin"),
+		bytesPattern("deep-", int(chunkSize*3)), 0o644))
+
+	ctx := context.Background()
+
+	// runFileStorageBackup writes a real snapshot to storeDir and closes
+	// the source index, so verification runs from remote bytes only.
+	cfg, storer, snapshotID := runFileStorageBackup(
+		ctx, t, fs, dataDir, storeDir, dbPath, chunkSize, maxBlobSize)
+
+	newVerifier := func() *vaultik.Vaultik {
+		v := &vaultik.Vaultik{
+			Config:  cfg,
+			Storage: storer,
+			Fs:      fs,
+			Stdout:  io.Discard,
+			Stderr:  io.Discard,
+			UI:      ui.NewWithColor(io.Discard, false),
+		}
+		v.SetContext(ctx)
+
+		return v
+	}
+
+	require.NoError(t,
+		newVerifier().RunDeepVerify(snapshotID, &vaultik.VerifyOptions{Deep: true}),
+		"deep verify should pass on a healthy snapshot")
+
+	// Flip a byte inside one blob without changing its length, so the
+	// blob-existence and size checks still pass and verification reaches
+	// the blob-content stage.
+	corruptOneBlob(t, fs, filepath.Join(storeDir, "blobs"))
+
+	require.Error(t,
+		newVerifier().RunDeepVerify(snapshotID, &vaultik.VerifyOptions{Deep: true}),
+		"deep verify should fail on a corrupted blob")
+}
+
+// corruptOneBlob flips a middle byte of the first blob file found under
+// blobsDir, leaving the file length unchanged.
+func corruptOneBlob(t *testing.T, fs afero.Fs, blobsDir string) {
+	t.Helper()
+
+	var blobPath string
+
+	err := afero.Walk(fs, blobsDir,
+		func(path string, info os.FileInfo, err error) error {
+			if err != nil {
+				return err
+			}
+
+			if blobPath == "" && !info.IsDir() {
+				blobPath = path
+			}
+
+			return nil
+		})
+	require.NoError(t, err)
+	require.NotEmpty(t, blobPath, "expected at least one blob on disk")
+
+	data, err := afero.ReadFile(fs, blobPath)
+	require.NoError(t, err)
+	require.NotEmpty(t, data)
+
+	data[len(data)/2] ^= 0xff
+	require.NoError(t, afero.WriteFile(fs, blobPath, data, 0o644))
+}

internal/vaultik/helpers.go

@@ -33,8 +33,9 @@ func ubytes(n int64) string {
 var (
 	errMalformedSnapshotID = errors.New(
 		"invalid snapshot ID format: expected hostname_snapshotname_timestamp")
-	errInvalidDuration = errors.New("invalid duration")
+	errInvalidDuration  = errors.New("invalid duration")
-	errUnknownTimeUnit = errors.New("unknown time unit")
+	errUnknownTimeUnit  = errors.New("unknown time unit")
+	errNegativeDuration = errors.New("negative durations are not supported")
 )
 
 // Time-unit lengths used by parseDuration.
@@ -138,8 +139,13 @@ func parseSnapshotName(snapshotID string) string {
 
 // parseDuration parses a duration string with support for human-friendly units:
 // d/day/days, w/week/weeks, mo/month/months, y/year/years, plus standard Go
-// duration units (h, m, s).
+// duration units. Following Go, m is minutes and mo is months. A bare number,
+// an unknown unit, and a negative value are all rejected.
 func parseDuration(s string) (time.Duration, error) {
+	if strings.HasPrefix(strings.TrimSpace(s), "-") {
+		return 0, errNegativeDuration
+	}
+
 	d, err := time.ParseDuration(s)
 	if err == nil {
 		return d, nil

internal/vaultik/helpers_test.go

@@ -51,13 +51,32 @@ func TestParseDuration(t *testing.T) {
 		want  time.Duration
 		err   bool
 	}{
-		{"30d", 30 * 24 * time.Hour, false},
+		// Go units, including the m-is-minutes / mo-is-months distinction
-		{"4w", 4 * 7 * 24 * time.Hour, false},
+		// that this parser exists to keep straight.
-		{"6mo", 6 * 30 * 24 * time.Hour, false},
+		{"10ns", 10 * time.Nanosecond, false},
-		{"1y", 365 * 24 * time.Hour, false},
+		{"10us", 10 * time.Microsecond, false},
-		{"2w3d", 2*7*24*time.Hour + 3*24*time.Hour, false},
+		{"500ms", 500 * time.Millisecond, false},
-		{"1h", time.Hour, false},
 		{"30s", 30 * time.Second, false},
+		{"6m", 6 * time.Minute, false},
+		{"1h", time.Hour, false},
+		// Extended calendar units.
+		{"30d", 30 * 24 * time.Hour, false},
+		{"3days", 3 * 24 * time.Hour, false},
+		{"4w", 4 * 7 * 24 * time.Hour, false},
+		{"2weeks", 2 * 7 * 24 * time.Hour, false},
+		{"6mo", 180 * 24 * time.Hour, false},
+		{"1month", 30 * 24 * time.Hour, false},
+		{"1y", 365 * 24 * time.Hour, false},
+		{"2years", 2 * 365 * 24 * time.Hour, false},
+		// Combined units.
+		{"2w3d", 2*7*24*time.Hour + 3*24*time.Hour, false},
+		{"1y6mo", 365*24*time.Hour + 180*24*time.Hour, false},
+		// Rejected inputs.
+		{"6", 0, true},   // bare number, no unit
+		{"5x", 0, true},  // unknown unit
+		{"-5d", 0, true}, // negative, extended unit
+		{"-5h", 0, true}, // negative, Go unit
+		{"", 0, true},    // empty
 		{"garbage", 0, true},
 	}
 

internal/vaultik/prune_count_test.go

@@ -0,0 +1,79 @@
+package vaultik //nolint:testpackage // exercises unexported count helpers
+
+import (
+	"context"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+	"sneak.berlin/go/vaultik/internal/database"
+	"sneak.berlin/go/vaultik/internal/log"
+)
+
+// TestTableCountForReportSurfacesReadFailure is the regression guard for
+// the discarded-error bug: getTableCount for a table its query cannot
+// resolve must not silently become 0. A count that could not be read is
+// reported as unknown, which a reader can tell apart from an empty table.
+//
+//nolint:paralleltest // installs the global logger via log.Initialize
+func TestTableCountForReportSurfacesReadFailure(t *testing.T) {
+	log.Initialize(log.Config{})
+
+	ctx := context.Background()
+
+	db, err := database.New(ctx, ":memory:")
+	require.NoError(t, err)
+	t.Cleanup(func() { _ = db.Close() })
+
+	v := &Vaultik{DB: db}
+	v.SetContext(ctx)
+
+	// A table present in the schema reads as a real count.
+	blobs := v.tableCountForReport("blobs")
+	require.NotNil(t, blobs, "an existing table must read as a real count")
+	assert.Equal(t, int64(0), *blobs)
+
+	// A syntactically valid name the sanitizer accepts but whose table
+	// the query cannot resolve is the exact shape #96 describes: a
+	// would-be loud failure that used to be discarded into a 0.
+	_, err = v.getTableCount("snapshots_missing")
+	require.Error(t, err, "a query against a nonexistent table must fail")
+
+	missing := v.tableCountForReport("snapshots_missing")
+	assert.Nil(t, missing, "a failed read is unknown, not a count")
+
+	// The rendered count for a failed read must say unknown, never 0.
+	assert.Equal(t, countUnknown, countText(missing))
+	assert.NotEqual(t, "0", countText(missing))
+}
+
+// TestCountTextDistinguishesEmptyFromUnknown pins the distinction the
+// output has to preserve: 0 means the table was empty, "unknown" means
+// the count could not be read.
+func TestCountTextDistinguishesEmptyFromUnknown(t *testing.T) {
+	t.Parallel()
+
+	zero := int64(0)
+	seven := int64(7)
+
+	assert.Equal(t, "0", countText(&zero))
+	assert.Equal(t, "7", countText(&seven))
+	assert.Equal(t, countUnknown, countText(nil))
+}
+
+// TestCountDiffUnknownWhenEitherSideUnknown checks that a delta computed
+// from an unreadable count is itself unknown rather than a plausible
+// number.
+func TestCountDiffUnknownWhenEitherSideUnknown(t *testing.T) {
+	t.Parallel()
+
+	before := int64(10)
+	after := int64(3)
+
+	require.NotNil(t, countDiff(&before, &after))
+	assert.Equal(t, int64(7), *countDiff(&before, &after))
+
+	assert.Nil(t, countDiff(nil, &after), "unknown before yields unknown delta")
+	assert.Nil(t, countDiff(&before, nil), "unknown after yields unknown delta")
+	assert.Nil(t, countDiff(nil, nil))
+}

internal/vaultik/snapshot.go

@@ -8,6 +8,7 @@ import (
 	"path/filepath"
 	"regexp"
 	"sort"
+	"strconv"
 	"strings"
 	"time"
 
@@ -1540,12 +1541,17 @@ func (v *Vaultik) outputRemoveJSON(result *RemoveResult) error {
 	return encoder.Encode(result)
 }
 
-// PruneResult contains statistics about the prune operation
+// PruneResult contains statistics about the prune operation.
+// SnapshotsDeleted counts snapshots actually deleted. FilesDeleted,
+// ChunksDeleted, and BlobsDeleted are derived from before/after row
+// counts of the local index; each is nil when a count could not be read,
+// so an unreadable count is reported as unknown rather than silently
+// as 0.
 type PruneResult struct {
 	SnapshotsDeleted int64
-	FilesDeleted     int64
+	FilesDeleted     *int64
-	ChunksDeleted    int64
+	ChunksDeleted    *int64
-	BlobsDeleted     int64
+	BlobsDeleted     *int64
 }
 
 // PruneDatabase removes incomplete snapshots and orphaned files, chunks,
@@ -1560,7 +1566,7 @@ func (v *Vaultik) PruneDatabase() (*PruneResult, error) {
 	result := &PruneResult{}
 
 	// Snapshot counts before deletion of incompletes.
-	snapshotCountBefore, _ := v.getTableCount("snapshots")
+	snapshotCountBefore := v.tableCountForReport("snapshots")
 
 	// First, delete any incomplete snapshots
 	incompleteSnapshots, err := v.Repositories.Snapshots.GetIncompleteSnapshots(v.ctx)
@@ -1575,9 +1581,9 @@ func (v *Vaultik) PruneDatabase() (*PruneResult, error) {
 	}
 
 	// Get counts before cleanup for reporting
-	fileCountBefore, _ := v.getTableCount("files")
+	fileCountBefore := v.tableCountForReport("files")
-	chunkCountBefore, _ := v.getTableCount("chunks")
+	chunkCountBefore := v.tableCountForReport("chunks")
-	blobCountBefore, _ := v.getTableCount("blobs")
+	blobCountBefore := v.tableCountForReport("blobs")
 
 	// Run the cleanup
 	err = v.SnapshotManager.CleanupOrphanedData(v.ctx)
@@ -1586,36 +1592,83 @@ func (v *Vaultik) PruneDatabase() (*PruneResult, error) {
 	}
 
 	// Get counts after cleanup
-	fileCountAfter, _ := v.getTableCount("files")
+	fileCountAfter := v.tableCountForReport("files")
-	chunkCountAfter, _ := v.getTableCount("chunks")
+	chunkCountAfter := v.tableCountForReport("chunks")
-	blobCountAfter, _ := v.getTableCount("blobs")
+	blobCountAfter := v.tableCountForReport("blobs")
 
-	result.FilesDeleted = fileCountBefore - fileCountAfter
+	result.FilesDeleted = countDiff(fileCountBefore, fileCountAfter)
-	result.ChunksDeleted = chunkCountBefore - chunkCountAfter
+	result.ChunksDeleted = countDiff(chunkCountBefore, chunkCountAfter)
-	result.BlobsDeleted = blobCountBefore - blobCountAfter
+	result.BlobsDeleted = countDiff(blobCountBefore, blobCountAfter)
 
 	log.Info("Local database prune complete",
 		"incomplete_snapshots", result.SnapshotsDeleted,
-		"orphaned_files", result.FilesDeleted,
+		"orphaned_files", countText(result.FilesDeleted),
-		"orphaned_chunks", result.ChunksDeleted,
+		"orphaned_chunks", countText(result.ChunksDeleted),
-		"orphaned_blobs", result.BlobsDeleted,
+		"orphaned_blobs", countText(result.BlobsDeleted),
 	)
 
-	snapshotCountAfter := snapshotCountBefore - result.SnapshotsDeleted
+	// Snapshots remaining after removing the incomplete ones; unknown if
+	// the pre-prune snapshot count could not be read.
+	snapshotsRemain := countDiff(snapshotCountBefore, &result.SnapshotsDeleted)
 
 	v.UI.Completef("Pruned local index database.")
-	v.UI.Detailf("Incomplete snapshots: %d removed (%d remain).",
+	v.UI.Detailf("Incomplete snapshots: %s removed (%s remain).",
-		result.SnapshotsDeleted, snapshotCountAfter)
+		countText(&result.SnapshotsDeleted), countText(snapshotsRemain))
-	v.UI.Detailf("Orphaned files: %d removed (%d remain).",
+	v.UI.Detailf("Orphaned files: %s removed (%s remain).",
-		result.FilesDeleted, fileCountAfter)
+		countText(result.FilesDeleted), countText(fileCountAfter))
-	v.UI.Detailf("Orphaned chunks: %d removed (%d remain).",
+	v.UI.Detailf("Orphaned chunks: %s removed (%s remain).",
-		result.ChunksDeleted, chunkCountAfter)
+		countText(result.ChunksDeleted), countText(chunkCountAfter))
-	v.UI.Detailf("Orphaned blobs: %d removed (%d remain).",
+	v.UI.Detailf("Orphaned blobs: %s removed (%s remain).",
-		result.BlobsDeleted, blobCountAfter)
+		countText(result.BlobsDeleted), countText(blobCountAfter))
 
 	return result, nil
 }
 
+// countUnknown is what a count reads as when its query could not be run,
+// distinct from "0", which means the table really was empty.
+const countUnknown = "unknown"
+
+// tableCountForReport returns the row count of a table for the prune
+// summary, or nil if the count could not be read. A read failure is
+// logged at warn — visible even under --json, which routes warnings to
+// stderr — and then rendered as unknown rather than silently becoming 0,
+// so a broken query is a visible failure instead of a plausible wrong
+// number.
+func (v *Vaultik) tableCountForReport(tableName string) *int64 {
+	count, err := v.getTableCount(tableName)
+	if err != nil {
+		log.Warn("could not read table row count for prune summary",
+			"table", tableName, "error", err)
+
+		return nil
+	}
+
+	return &count
+}
+
+// countDiff returns before-after, or nil if either count is unknown so
+// that an unreadable count does not collapse into a plausible delta.
+func countDiff(before, after *int64) *int64 {
+	if before == nil || after == nil {
+		return nil
+	}
+
+	diff := *before - *after
+
+	return &diff
+}
+
+// countText renders a count that may be unknown: nil (the read failed)
+// becomes "unknown", never "0", so a reader can tell an empty table from
+// one that could not be queried.
+func countText(count *int64) string {
+	if count == nil {
+		return countUnknown
+	}
+
+	return strconv.FormatInt(*count, 10)
+}
+
 // validTableNameRe matches table names containing only lowercase
 // alphanumeric characters and underscores.
 var validTableNameRe = regexp.MustCompile(`^[a-z0-9_]+$`)

internal/vaultik/verify.go

@@ -344,12 +344,8 @@ func (v *Vaultik) verifyBlob(blobInfo snapshot.BlobInfo, db *sql.DB) error {
 		return fmt.Errorf("failed to get decryptor: %w", err)
 	}
 
-	// Hash the encrypted blob data as it streams through to decryption
+	// Decrypt blob
-	blobHasher := sha256.New()
+	decryptedReader, err := decryptor.DecryptStream(reader)
-	teeReader := io.TeeReader(reader, blobHasher)
-
-	// Decrypt blob (reading through teeReader to hash encrypted data)
-	decryptedReader, err := decryptor.DecryptStream(teeReader)
 	if err != nil {
 		return fmt.Errorf("failed to decrypt: %w", err)
 	}
@@ -361,12 +357,19 @@ func (v *Vaultik) verifyBlob(blobInfo snapshot.BlobInfo, db *sql.DB) error {
 	}
 	defer decompressor.Close()
 
-	chunkCount, err := v.verifyBlobChunks(db, blobInfo.Hash, decompressor)
+	// A blob's hash — its remote name — is the double SHA256 of its
+	// decompressed plaintext (see blobgen.Writer.Sum256), not of the
+	// encrypted bytes. Hash the plaintext as chunk verification streams
+	// it, then compare on completion.
+	plaintextHasher := sha256.New()
+	hashedStream := io.TeeReader(decompressor, plaintextHasher)
+
+	chunkCount, err := v.verifyBlobChunks(db, blobInfo.Hash, hashedStream)
 	if err != nil {
 		return err
 	}
 
-	err = v.verifyBlobFinalIntegrity(decompressor, blobHasher, blobInfo.Hash)
+	err = v.verifyBlobFinalIntegrity(hashedStream, plaintextHasher, blobInfo.Hash)
 	if err != nil {
 		return err
 	}
@@ -470,14 +473,13 @@ func (v *Vaultik) verifyBlobChunks(
 }
 
 // verifyBlobFinalIntegrity checks that no trailing data exists in the
-// decompressed stream and that the encrypted blob hash matches the
+// decompressed stream and that the blob hash matches the expected value.
-// expected value.
 func (v *Vaultik) verifyBlobFinalIntegrity(
-	decompressor io.Reader, blobHasher hash.Hash, expectedHash string,
+	plaintext io.Reader, plaintextHasher hash.Hash, expectedHash string,
 ) error {
 	// Verify no remaining data in blob - if the chunk list is accurate,
 	// the blob should be fully consumed.
-	remaining, err := io.Copy(io.Discard, decompressor)
+	remaining, err := io.Copy(io.Discard, plaintext)
 	if err != nil {
 		return fmt.Errorf("failed to check for remaining blob data: %w", err)
 	}
@@ -486,8 +488,11 @@ func (v *Vaultik) verifyBlobFinalIntegrity(
 		return fmt.Errorf("%w: %d bytes", errTrailingBlobData, remaining)
 	}
 
-	// Verify blob hash matches the encrypted data we downloaded
+	// The blob hash is the double SHA256 of its plaintext content.
-	calculatedBlobHash := hex.EncodeToString(blobHasher.Sum(nil))
+	firstHash := plaintextHasher.Sum(nil)
+	secondHash := sha256.Sum256(firstHash)
+	calculatedBlobHash := hex.EncodeToString(secondHash[:])
+
 	if calculatedBlobHash != expectedHash {
 		return fmt.Errorf("%w: calculated %s, expected %s",
 			errBlobHashMismatch, calculatedBlobHash, expectedHash)

script/bootstrap

@@ -114,9 +114,6 @@ main() {
     # from CI. Nothing on the host is ever used as a linter, at any
     # version, so installing one here would buy nothing.
 
-    # sqlite3 CLI: the test suite shells out to it (VACUUM).
-    if missing sqlite3; then pkg_install sqlite sqlite3 sqlite sqlite; fi
-
     # goreleaser, at the version pinned by script/install-goreleaser and
     # verified against a hardcoded sha256. Package managers are not used
     # for it: they ship whatever version they happen to carry, and the

script/install-go

@@ -0,0 +1,161 @@
+#!/bin/sh
+# script/install-go: install the Go toolchain pinned by go.mod into the
+# repo-local tool directory, verified against a committed sha256. Our
+# own extension to scripts-to-rule-them-all. Idempotent: exits at once
+# when the pinned toolchain is already installed.
+#
+# Only .gitea/workflows/release.yml calls this. goreleaser is not a
+# compiler: it shells out to `go` for the `before:` hook and for every
+# one of the four cross-compiles, so the release runner needs a Go
+# toolchain on PATH. check.yml never does -- it builds inside the
+# digest-pinned Dockerfile images -- so this is the release path's only
+# host Go, and per REPO_POLICIES.md it must be pinned by hash.
+# actions/setup-go exposes no checksum input, so Go is installed the way
+# script/install-goreleaser installs goreleaser: download the exact
+# archive from go.dev and refuse it unless its sha256 matches the value
+# committed below.
+#
+# The version is go.mod's `go` directive, the single source of truth for
+# the toolchain. GO_VERSION below MUST equal it, and this script fails
+# when they disagree -- so bumping Go is one reviewed change touching
+# go.mod, the checksum here, and the Dockerfile golang digest together.
+#
+# Linux only, because that is what the release runner is. A darwin dev
+# building a snapshot uses their own Go; supporting an OS means adding
+# its checksums.
+set -eu
+
+ROOT="$(cd "$(dirname "$0")/.." && pwd -P)"
+
+# Go 1.26.1, 2026-09-21. Checksums are the sha256 values go.dev publishes
+# for each archive at https://go.dev/dl/ (also in its ?mode=json
+# manifest).
+GO_VERSION="1.26.1"
+SHA256_LINUX_AMD64="031f088e5d955bab8657ede27ad4e3bc5b7c1ba281f05f245bcc304f327c987a"
+SHA256_LINUX_ARM64="a290581cfe4fe28ddd737dde3095f3dbeb7f2e4065cab4eae44dfc53b760c2f7"
+
+GOROOT_DIR="$ROOT/.tool/go"
+GOCMD="$GOROOT_DIR/bin/go"
+
+# The `go` directive in go.mod, e.g. "1.26.1" from `go 1.26.1`.
+gomod_go_version() {
+    sed -n 's/^go \([0-9][0-9.]*\).*/\1/p' "$ROOT/go.mod" | head -n 1
+}
+
+# Print the version of the go at $1 as "1.26.1", or nothing if it is not
+# usable. `go version` prints "go version go1.26.1 linux/amd64".
+go_version() {
+    [ -x "$1" ] || return 0
+    "$1" version 2>/dev/null |
+        sed -n 's/^go version go\([0-9][0-9.]*\) .*/\1/p' |
+        head -n 1
+}
+
+verify_sha256() {
+    file="$1"
+    want="$2"
+    if command -v sha256sum >/dev/null 2>&1; then
+        got="$(sha256sum "$file" | cut -d' ' -f1)"
+    elif command -v shasum >/dev/null 2>&1; then
+        got="$(shasum -a 256 "$file" | cut -d' ' -f1)"
+    else
+        echo "install-go: no sha256sum or shasum available" >&2
+        return 1
+    fi
+    if [ "$got" != "$want" ]; then
+        echo "install-go: checksum mismatch for $file" >&2
+        echo "  expected: $want" >&2
+        echo "  actual:   $got" >&2
+        return 1
+    fi
+}
+
+# On a Gitea/GitHub Actions runner, put the toolchain on PATH for the
+# steps that follow by appending to the file named by $GITHUB_PATH. A
+# no-op off CI, where the caller manages its own PATH.
+export_ci_path() {
+    [ -n "${GITHUB_PATH:-}" ] || return 0
+    echo "$GOROOT_DIR/bin" >>"$GITHUB_PATH"
+}
+
+main() {
+    cd "$ROOT"
+
+    want="$(gomod_go_version)"
+    if [ "$want" != "$GO_VERSION" ]; then
+        echo "install-go: go.mod says go $want but this script pins" \
+            "$GO_VERSION." >&2
+        echo "  Update GO_VERSION and the checksums in this script to" \
+            "match go.mod." >&2
+        exit 1
+    fi
+
+    # Already installed from a previous run? Then just fix PATH and stop.
+    if [ "$(go_version "$GOCMD")" = "$GO_VERSION" ]; then
+        echo "go $GO_VERSION already installed in .tool/go"
+        export_ci_path
+        return 0
+    fi
+
+    os="$(uname -s)"
+    arch="$(uname -m)"
+    case "$os" in
+        Linux) os="linux" ;;
+        *)
+            echo "install-go: unsupported OS $os (release runner is Linux)" >&2
+            exit 1
+            ;;
+    esac
+    case "$arch" in
+        x86_64 | amd64)
+            arch="amd64"
+            sum="$SHA256_LINUX_AMD64"
+            ;;
+        arm64 | aarch64)
+            arch="arm64"
+            sum="$SHA256_LINUX_ARM64"
+            ;;
+        *)
+            echo "install-go: no pinned checksum for architecture $arch" >&2
+            exit 1
+            ;;
+    esac
+
+    archive="go${GO_VERSION}.${os}-${arch}.tar.gz"
+    url="https://go.dev/dl/${archive}"
+
+    if ! command -v curl >/dev/null 2>&1; then
+        echo "install-go: curl is required" >&2
+        exit 1
+    fi
+
+    dl="$(mktemp -d)"
+    mkdir -p "$ROOT/.tool"
+    stage="$(mktemp -d "$ROOT/.tool/.go-install.XXXXXX")"
+    # shellcheck disable=SC2064 # expand the paths now, not at trap time
+    trap "rm -rf '$dl' '$stage'" EXIT INT TERM
+
+    echo "installing go $GO_VERSION for ${os}-${arch}"
+    curl -fsSL --retry 3 -o "$dl/$archive" "$url"
+    verify_sha256 "$dl/$archive" "$sum"
+
+    # The archive unpacks to a top-level `go/` directory. Extract it into
+    # a staging directory on the same filesystem as the destination, then
+    # rename it into place so a concurrent run never observes a
+    # half-written toolchain.
+    tar -xzf "$dl/$archive" -C "$stage"
+    rm -rf "$GOROOT_DIR"
+    mv "$stage/go" "$GOROOT_DIR"
+
+    installed="$(go_version "$GOCMD")"
+    if [ "$installed" != "$GO_VERSION" ]; then
+        echo "install-go: installed toolchain reports '$installed'," \
+            "expected '$GO_VERSION'" >&2
+        exit 1
+    fi
+
+    echo "go $GO_VERSION installed to .tool/go"
+    export_ci_path
+}
+
+main "$@"

test-config.yml

@@ -1,27 +0,0 @@
-# Vaultik test configuration
-hostname: test-host
-index_path: /tmp/vaultik-test/index.db
-source_dirs:
-  - /tmp/vaultik-test/source
-
-# S3 configuration
-s3:
-  endpoint: http://localhost:19000  # gofakes3 test endpoint
-  bucket: test-bucket
-  prefix: test-
-  access_key_id: test-key
-  secret_access_key: test-secret
-  region: us-east-1
-
-# Chunking configuration
-chunk_size: 65536  # 64KB average chunk size
-min_chunk_size: 32768  # 32KB minimum
-max_chunk_size: 131072  # 128KB maximum
-blob_size: 1048576  # 1MB blobs for testing
-
-# Compression
-compression_level: 3
-
-# Encryption
-# age_recipients:
-#   - age1qyqszqgpqyqszqgpqyqszqgpqyqszqgpqyqszqgpqyqszqgpqyqs3mw88h

test/integration-config.yml

@@ -1,24 +0,0 @@
-age_recipients:
-  - age1278m9q7dp3chsh2dcy82qk27v047zywyvtxwnj4cvt0z65jw6a7q5dqhfj  # sneak's long term age key
-  - age1ezrjmfpwsc95svdg0y54mums3zevgzu0x0ecq2f7tp8a05gl0sjq9q9wjg  # insecure integration test key
-source_dirs:
-  - /tmp/vaultik-test-source
-exclude:
-  - '*.log'
-  - '*.tmp'
-  - '.git'
-  - 'node_modules'
-s3:
-  endpoint: http://ber1app1.local:3900/
-  bucket: vaultik-integration-test
-  prefix: test-host/
-  access_key_id: GKbc8e6d35fdf50847f155aca5
-  secret_access_key: 217046bee47c050301e3cc13e3cba1a8a943cf5f37f8c7979c349c5254441d18
-  region: us-east-1
-  use_ssl: false
-  part_size: 5242880  # 5MB
-index_path: /tmp/vaultik-integration-test.sqlite
-chunk_size: 10MB
-blob_size_limit: 10GB
-compression_level: 3
-hostname: test-host