Default the manifest to index.mf and keep it out of its own listing (closes #100)

mfer gen now writes index.mf instead of .index.mf, the name fetch
requests and the README calls the standard filename. Given a
directory, check, freshen, list and export look only for index.mf;
.index.mf is no longer recognized. Because index.mf is not hidden, gen
and freshen now leave the manifest they write out of its own listing by
file identity (os.SameFile), so it is recognized however its path is
spelled, through a symlink included, while an ordinary file of the same
name elsewhere in the tree is still listed.

Model: opus-5-5

go.mod

@@ -12,13 +12,13 @@ require (
 	github.com/pterm/pterm v0.12.35
 	github.com/spf13/afero v1.8.0
 	github.com/stretchr/testify v1.8.1
-	github.com/urfave/cli/v2 v2.23.6
+	github.com/urfave/cli/v2 v2.27.7
 	google.golang.org/protobuf v1.28.1
 )
 
 require (
 	github.com/atomicgo/cursor v0.0.1 // indirect
-	github.com/cpuguy83/go-md2man/v2 v2.0.2 // indirect
+	github.com/cpuguy83/go-md2man/v2 v2.0.7 // indirect
 	github.com/fatih/color v1.7.0 // indirect
 	github.com/gookit/color v1.4.2 // indirect
 	github.com/klauspost/cpuid/v2 v2.0.9 // indirect
@@ -34,7 +34,7 @@ require (
 	github.com/russross/blackfriday/v2 v2.1.0 // indirect
 	github.com/spaolacci/murmur3 v1.1.0 // indirect
 	github.com/xo/terminfo v0.0.0-20210125001918-ca9a967f8778 // indirect
-	github.com/xrash/smetrics v0.0.0-20201216005158-039620a65673 // indirect
+	github.com/xrash/smetrics v0.0.0-20240521201337-686a1a2994c1 // indirect
 	golang.org/x/crypto v0.0.0-20220525230936-793ad666bf5e // indirect
 	golang.org/x/sys v0.1.0 // indirect
 	golang.org/x/term v0.0.0-20210927222741-03fcf44c2211 // indirect

go.sum

@@ -61,8 +61,8 @@ github.com/client9/misspell v0.3.4/go.mod h1:qj6jICC3Q7zFZvVWo7KLAzC3yx5G7kyvSDk
 github.com/cncf/udpa/go v0.0.0-20191209042840-269d4d468f6f/go.mod h1:M8M6+tZqaGXZJjfX53e64911xZQV5JYwmTeXPW+k8Sc=
 github.com/cncf/udpa/go v0.0.0-20200629203442-efcf912fb354/go.mod h1:WmhPx2Nbnhtbo57+VJT5O0JRkEi1Wbu0z5j0R8u5Hbk=
 github.com/cncf/udpa/go v0.0.0-20201120205902-5459f2c99403/go.mod h1:WmhPx2Nbnhtbo57+VJT5O0JRkEi1Wbu0z5j0R8u5Hbk=
-github.com/cpuguy83/go-md2man/v2 v2.0.2 h1:p1EgwI/C7NhT0JmVkwCD2ZBK8j4aeHQX2pMHHBfMQ6w=
-github.com/cpuguy83/go-md2man/v2 v2.0.2/go.mod h1:tgQtvFlXSQOSOSIRvRPT7W67SCa46tRHOmNcaadrF8o=
+github.com/cpuguy83/go-md2man/v2 v2.0.7 h1:zbFlGlXEAKlwXpmvle3d8Oe3YnkKIK4xSRTd3sHPnBo=
+github.com/cpuguy83/go-md2man/v2 v2.0.7/go.mod h1:oOW0eioCTA6cOiMLiUPZOpcVxMig6NIQQ7OS05n1F4g=
 github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
 github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
@@ -231,12 +231,12 @@ github.com/tj/go-buffer v1.1.0/go.mod h1:iyiJpfFcR2B9sXu7KvjbT9fpM4mOelRSDTbntVj
 github.com/tj/go-elastic v0.0.0-20171221160941-36157cbbebc2/go.mod h1:WjeM0Oo1eNAjXGDx2yma7uG2XoyRZTq1uv3M/o7imD0=
 github.com/tj/go-kinesis v0.0.0-20171128231115-08b17f58cb1b/go.mod h1:/yhzCV0xPfx6jb1bBgRFjl5lytqVqZXEaeqWP8lTEao=
 github.com/tj/go-spin v1.1.0/go.mod h1:Mg1mzmePZm4dva8Qz60H2lHwmJ2loum4VIrLgVnKwh4=
-github.com/urfave/cli/v2 v2.23.6 h1:iWmtKD+prGo1nKUtLO0Wg4z9esfBM4rAV4QRLQiEmJ4=
-github.com/urfave/cli/v2 v2.23.6/go.mod h1:GHupkWPMM0M/sj1a2b4wUrWBPzazNrIjouW6fmdJLxc=
+github.com/urfave/cli/v2 v2.27.7 h1:bH59vdhbjLv3LAvIu6gd0usJHgoTTPhCFib8qqOwXYU=
+github.com/urfave/cli/v2 v2.27.7/go.mod h1:CyNAG/xg+iAOg0N4MPGZqVmv2rCoP267496AOXUZjA4=
 github.com/xo/terminfo v0.0.0-20210125001918-ca9a967f8778 h1:QldyIu/L63oPpyvQmHgvgickp1Yw510KJOqX7H24mg8=
 github.com/xo/terminfo v0.0.0-20210125001918-ca9a967f8778/go.mod h1:2MuV+tbUrU1zIOPMxZ5EncGwgmMJsa+9ucAQZXxsObs=
-github.com/xrash/smetrics v0.0.0-20201216005158-039620a65673 h1:bAn7/zixMGCfxrRTfdpNzjtPYqr8smhKouy9mxVdGPU=
-github.com/xrash/smetrics v0.0.0-20201216005158-039620a65673/go.mod h1:N3UwUGtsrSj3ccvlPHLoLsHnpR27oXr4ZE984MbSER8=
+github.com/xrash/smetrics v0.0.0-20240521201337-686a1a2994c1 h1:gEOO8jv9F4OT7lGCjxCBTO/36wtF6j2nSip77qHd4x4=
+github.com/xrash/smetrics v0.0.0-20240521201337-686a1a2994c1/go.mod h1:Ohn+xnUBiLI6FVj/9LpzZWtj1/D6lUovWYBkxHVV3aM=
 github.com/yuin/goldmark v1.1.25/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=
 github.com/yuin/goldmark v1.1.27/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=
 github.com/yuin/goldmark v1.1.32/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=

internal/cli/entry_test.go

@@ -9,6 +9,8 @@ import (
 	"math/rand"
 	"os"
 	"path/filepath"
+	"slices"
+	"strings"
 	"sync"
 	"testing"
 
@@ -31,6 +33,7 @@ const (
 	testFlagBase    = "--base"
 	testFlagNoExtra = "--no-extra-files"
 	testFlagVersion = "--version"
+	testFlagVerbose = "--verbose"
 )
 
 var errSimulatedWrite = errors.New("simulated write failure")
@@ -43,20 +46,32 @@ var errSimulatedWrite = errors.New("simulated write failure")
 var runMu sync.Mutex
 
 // runCLI invokes RunWithOptions while holding runMu so parallel tests
-// capture their own output. Before releasing the lock it points the
-// process-global logger at io.Discard: other tests log outside the lock
-// (manifest loads, scans), and those lines must not land in this run's
-// buffers once it has returned and its test is reading them.
+// capture their own output, and returns its exit code.
 func runCLI(opts *RunOptions) int {
+	exitCode, _ := runCLIWithLevel(opts)
+
+	return exitCode
+}
+
+// runCLIWithLevel is runCLI that also returns the log level the run left
+// set, read while runMu still keeps other runs from changing it. Each run
+// starts at the default level, as a new process does. Before releasing the
+// lock it points the process-global logger at io.Discard: other tests log
+// outside the lock (manifest loads, scans), and those lines must not land in
+// this run's buffers once it has returned and its test is reading them.
+func runCLIWithLevel(opts *RunOptions) (int, log.Level) {
 	runMu.Lock()
 	defer runMu.Unlock()
 
+	log.SetLevel(log.InfoLevel)
+
 	exitCode := RunWithOptions(opts)
+	level := log.GetLevel()
 
 	log.SetOutput(io.Discard, io.Discard)
 	log.Init()
 
-	return exitCode
+	return exitCode, level
 }
 
 func TestMain(m *testing.M) {
@@ -236,6 +251,90 @@ func TestRootVerbosityFlags(t *testing.T) {
 	})
 }
 
+// commandsTakingVerbose returns the command lines -v can follow: the root and
+// the generate, check, freshen and fetch subcommands.
+func commandsTakingVerbose() [][]string {
+	return [][]string{
+		{testApp},
+		{testApp, cmdGenerate},
+		{testApp, cmdCheck},
+		{testApp, cmdFreshen},
+		{testApp, cmdFetch},
+	}
+}
+
+// TestVerboseCount asserts that one -v or --verbose gives verbose output and
+// two -v give debug output (issue #125). urfave/cli before v2.25.5 counted a
+// flag given by its alias twice, so one -v gave debug output.
+func TestVerboseCount(t *testing.T) {
+	t.Parallel()
+
+	cases := []struct {
+		flags []string
+		want  log.Level
+	}{
+		{[]string{"-v"}, log.VerboseLevel},
+		{[]string{testFlagVerbose}, log.VerboseLevel},
+		{[]string{"-v", "-v"}, log.DebugLevel},
+	}
+
+	for _, command := range commandsTakingVerbose() {
+		for _, tc := range cases {
+			args := slices.Concat(command, tc.flags)
+
+			t.Run(strings.Join(args, " "), func(t *testing.T) {
+				t.Parallel()
+
+				_, level := runCLIWithLevel(testOpts(args, afero.NewMemMapFs()))
+				assert.Equal(t, tc.want, level)
+			})
+		}
+	}
+}
+
+// TestCombinedShortVerboseRefused asserts that -vv is refused (issue #125):
+// single-letter flags do not combine, so the -v help text says -v -v.
+func TestCombinedShortVerboseRefused(t *testing.T) {
+	t.Parallel()
+
+	for _, command := range commandsTakingVerbose() {
+		args := slices.Concat(command, []string{"-vv"})
+
+		t.Run(strings.Join(args, " "), func(t *testing.T) {
+			t.Parallel()
+
+			opts := testOpts(args, afero.NewMemMapFs())
+			exitCode, level := runCLIWithLevel(opts)
+
+			assert.Equal(t, 1, exitCode)
+			assert.Contains(t, testStderr(t, opts), "flag provided but not defined: -vv")
+			assert.Equal(t, log.InfoLevel, level)
+		})
+	}
+}
+
+// TestShortAndLongVerboseRefused asserts that -v and --verbose given together
+// are refused (issue #125): urfave/cli v2 refuses a flag given under two of its
+// names, and one flag with an alias keeps help and parsing simple.
+func TestShortAndLongVerboseRefused(t *testing.T) {
+	t.Parallel()
+
+	for _, command := range commandsTakingVerbose() {
+		args := slices.Concat(command, []string{"-v", testFlagVerbose})
+
+		t.Run(strings.Join(args, " "), func(t *testing.T) {
+			t.Parallel()
+
+			opts := testOpts(args, afero.NewMemMapFs())
+			exitCode, level := runCLIWithLevel(opts)
+
+			assert.Equal(t, 1, exitCode)
+			assert.Contains(t, testStderr(t, opts), "Cannot use two forms of the same flag")
+			assert.Equal(t, log.InfoLevel, level)
+		})
+	}
+}
+
 func TestHelpCommand(t *testing.T) {
 	t.Parallel()
 

internal/cli/mfer.go

@@ -17,6 +17,7 @@ import (
 const (
 	cmdGenerate = "generate"
 	cmdCheck    = "check"
+	cmdFreshen  = "freshen"
 	cmdExport   = "export"
 	cmdFetch    = "fetch"
 	cmdVersion  = "version"
@@ -123,7 +124,7 @@ func commonFlags() []cli.Flag {
 		&cli.BoolFlag{
 			Name:    "verbose",
 			Aliases: []string{"v"},
-			Usage:   "Increase verbosity (-v for verbose, -vv for debug)",
+			Usage:   "Increase verbosity (-v for verbose, -v -v for debug)",
 			Count:   new(int),
 		},
 		&cli.BoolFlag{
@@ -139,6 +140,7 @@ func (mfa *CLIApp) generateCommand() *cli.Command {
 		Name:      cmdGenerate,
 		Aliases:   []string{"gen"},
 		Usage:     "Generate manifest file",
+		ArgsUsage: "[path ...]",
 		Action: func(c *cli.Context) error {
 			mfa.setVerbosity(c)
 			mfa.printBanner()
@@ -232,7 +234,7 @@ func (mfa *CLIApp) checkCommand() *cli.Command {
 
 func (mfa *CLIApp) freshenCommand() *cli.Command {
 	return &cli.Command{
-		Name:      "freshen",
+		Name:      cmdFreshen,
 		Usage:     "Update manifest with changed, new, and removed files",
 		ArgsUsage: manifestArgsUsage,
 		Action: func(c *cli.Context) error {
@@ -331,6 +333,7 @@ func (mfa *CLIApp) fetchCommand() *cli.Command {
 	return &cli.Command{
 		Name:      cmdFetch,
 		Usage:     "fetch manifest and referenced files",
+		ArgsUsage: "URL",
 		Action: func(c *cli.Context) error {
 			mfa.setVerbosity(c)
 			mfa.printBanner()