Enforce real timeouts on gpg subprocess calls (closes #62)

Every gpg run now has a one-minute deadline (gpgTimeout) on top of its
caller's context and is killed when either ends. A timeout is reported
as "gpg timed out" under the failing operation instead of "signal:
killed". Builder.Build and Checker.ExtractEmbeddedSigningKeyFP take a
context, so ToManifest's context now reaches signing and the
contextcheck suppression calling signing non-cancellable is gone.
Manifest loading takes no context, so its signature check is bounded by
the timeout alone. Killing gpg itself is enough: the gpg-agent it starts
runs detached and holds none of its output.

Model: opus-5-5

internal/cli/freshen.go

@@ -1,6 +1,7 @@
 package cli
 
 import (
+	"context"
 	"crypto/sha256"
 	"errors"
 	"fmt"
@@ -304,7 +305,7 @@ func (h *freshenHasher) processEntry(e *freshenEntry) error {
 // writeFreshenedManifest writes the manifest atomically (write to a
 // temp file, then rename over the target).
 func writeFreshenedManifest(
-	afs afero.Fs, builder *mfer.Builder, manifestPath string,
+	ctx context.Context, afs afero.Fs, builder *mfer.Builder, manifestPath string,
 ) error {
 	tmpPath := manifestPath + ".tmp"
 
@@ -313,7 +314,7 @@ func writeFreshenedManifest(
 		return fmt.Errorf("failed to create temp file: %w", err)
 	}
 
-	err = builder.Build(outFile)
+	err = builder.Build(ctx, outFile)
 	_ = outFile.Close()
 
 	if err != nil {
@@ -530,7 +531,7 @@ func (mfa *CLIApp) freshenManifestOperation(ctx *cli.Context) error {
 	}
 
 	// Write updated manifest atomically (write to temp, then rename)
-	err = writeFreshenedManifest(mfa.Fs, hasher.builder, manifestPath)
+	err = writeFreshenedManifest(ctx.Context, mfa.Fs, hasher.builder, manifestPath)
 	if err != nil {
 		return err
 	}