Resolve check and freshen paths against the manifest's directory (closes #177)

Without --base, check and freshen now look for a manifest's files in the
directory that holds it, the file named or the one found in a directory
argument, instead of the current directory. So `mfer check /media/drive`
checks a drive against its own index.mf from anywhere. check of a manifest
given by URL still uses the current directory, and --base still overrides,
even when it names the current directory. The --base help text of both
commands and the README's Tool Examples state the default; the README gains
a freshen entry for this, which also names the hidden files and symlinks
freshen leaves out by default and the flags that include them.

Model: opus-5-5

internal/cli/manifest_loader.go

@@ -6,6 +6,7 @@ import (
 	"fmt"
 	"io"
 	"net/http"
+	"path/filepath"
 	"strings"
 	"time"
 
@@ -88,3 +89,17 @@ func (mfa *CLIApp) resolveManifestArg(cmd *cli.Command) (string, error) {
 
 	return findManifest(mfa.Fs, ".")
 }
+
+// resolveBasePath returns the directory a manifest's paths are resolved
+// against: the one --base names, or else the directory holding the manifest,
+// or the current directory for a manifest URL.
+func resolveBasePath(cmd *cli.Command, manifestPath string) string {
+	switch {
+	case cmd.IsSet(flagBase):
+		return cmd.String(flagBase)
+	case isHTTPURL(manifestPath):
+		return "."
+	default:
+		return filepath.Dir(manifestPath)
+	}
+}