Never list index.mf at the top of the tree in gen and freshen (closes #233)

fetch saves the manifest as index.mf at the top of the tree and refuses a
manifest that lists a file there. gen given --output, and freshen with its
manifest outside the base directory, listed such a file, so they wrote
manifests fetch would not take.

Both now leave out each file the manifest would list as index.mf: one at
the top of the tree, or a file given to gen by that name. The rule goes by
that path alone and looks up no file, so a symlink named index.mf never
hides the file it points to. index.mf in a subdirectory is still listed.
The scanner in package mfer gets an option to leave out files by the path
they would be listed by.

Model: opus-5-5

README.md

@@ -287,6 +287,9 @@ are now tracked only in the [issues](https://git.eeqj.de/sneak/mfer/issues).
       only on the paths it is given and the files under them, so with the same
       `--seed` and an unchanged tree it writes the same bytes wherever the
       manifest goes. The file it writes to is never listed
+    - never lists `index.mf` at the top of a directory it is given, or a file it
+      is given by that name, wherever it writes the manifest, since `fetch`
+      saves the manifest there; `index.mf` in a subdirectory is listed
 - `mfer check` / `mfer check .`
     - verifies checksums of all files in manifest, displaying error and exiting
       nonzero if any files are missing or corrupted, or have permission bits
@@ -305,7 +308,8 @@ are now tracked only in the [issues](https://git.eeqj.de/sneak/mfer/issues).
     - rewrites `index.mf` to list the files now under the directory holding it,
       or under the one `--base` names, hashing only the files that are new or
       changed
-    - lists regular files only, as gen does
+    - lists regular files only, and never `index.mf` at the top of that
+      directory, as gen does
     - leaves out hidden files unless given `--include-dotfiles`, and symlinks
       unless given `--follow-symlinks`, which lists each symlink to a regular
       file under its own name with the contents of the file it points to