Enforce real timeouts on gpg subprocess calls (closes #62)

Every gpg run now has a one-minute deadline (gpgTimeout) on top of its
caller's context and is killed when either ends. A timeout is reported
as "gpg timed out" under the failing operation instead of "signal:
killed". Only gpg itself is killed; WaitDelay (one second) stops the run
from waiting on a process gpg left behind that still holds its output,
such as a wrapper script that does not exec the real gpg.
Builder.Build and Checker.ExtractEmbeddedSigningKeyFP take a context, so
ToManifest's context now reaches signing and the contextcheck
suppression calling signing non-cancellable is gone. Manifest loading
takes no context, so its signature check is bounded by the timeout
alone.

Model: opus-5-5

mfer/serialize.go

@@ -2,6 +2,7 @@ package mfer
 
 import (
 	"bytes"
+	"context"
 	"crypto/sha256"
 	"errors"
 	"fmt"
@@ -50,13 +51,13 @@ func newTimestampFromTime(t time.Time) *Timestamp {
 	}
 }
 
-func (m *manifest) generate() error {
+func (m *manifest) generate(ctx context.Context) error {
 	if m.pbInner == nil {
 		return errInnerNotSet
 	}
 
 	if m.pbOuter == nil {
-		e := m.generateOuter()
+		e := m.generateOuter(ctx)
 		if e != nil {
 			return e
 		}
@@ -77,7 +78,7 @@ func (m *manifest) generate() error {
 	return nil
 }
 
-func (m *manifest) generateOuter() error {
+func (m *manifest) generateOuter(ctx context.Context) error {
 	if m.pbInner == nil {
 		return errInternal
 	}
@@ -135,7 +136,7 @@ func (m *manifest) generateOuter() error {
 
 	// Sign the manifest if signing options are provided
 	if m.signingOptions != nil && m.signingOptions.KeyID != "" {
-		return m.signOuter()
+		return m.signOuter(ctx)
 	}
 
 	return nil
@@ -143,27 +144,27 @@ func (m *manifest) generateOuter() error {
 
 // signOuter signs the outer message with the configured GPG key and
 // embeds the signature, signer fingerprint, and public key.
-func (m *manifest) signOuter() error {
+func (m *manifest) signOuter(ctx context.Context) error {
 	sigString, err := m.signatureString()
 	if err != nil {
 		return fmt.Errorf("failed to generate signature string: %w", err)
 	}
 
-	sig, err := gpgSign([]byte(sigString), m.signingOptions.KeyID)
+	sig, err := gpgSign(ctx, []byte(sigString), m.signingOptions.KeyID)
 	if err != nil {
 		return fmt.Errorf("failed to sign manifest: %w", err)
 	}
 
 	m.pbOuter.Signature = sig
 
-	fingerprint, err := gpgGetKeyFingerprint(m.signingOptions.KeyID)
+	fingerprint, err := gpgGetKeyFingerprint(ctx, m.signingOptions.KeyID)
 	if err != nil {
 		return fmt.Errorf("failed to get key fingerprint: %w", err)
 	}
 
 	m.pbOuter.Signer = fingerprint
 
-	pubKey, err := gpgExportPublicKey(m.signingOptions.KeyID)
+	pubKey, err := gpgExportPublicKey(ctx, m.signingOptions.KeyID)
 	if err != nil {
 		return fmt.Errorf("failed to export public key: %w", err)
 	}