Enforce real timeouts on gpg subprocess calls (closes #62)

Every gpg run now has a one-minute deadline (gpgTimeout) on top of its
caller's context and is killed when either ends. A timeout is reported
as "gpg timed out" under the failing operation instead of "signal:
killed". Only gpg itself is killed; WaitDelay (one second) stops the run
from waiting on a process gpg left behind that still holds its output,
such as a wrapper script that does not exec the real gpg.
Builder.Build and Checker.ExtractEmbeddedSigningKeyFP take a context, so
ToManifest's context now reaches signing and the contextcheck
suppression calling signing non-cancellable is gone. Manifest loading
takes no context, so its signature check is bounded by the timeout
alone.

Model: opus-5-5

mfer/gpg.go

@@ -10,9 +10,21 @@ import (
 	"os/exec"
 	"path/filepath"
 	"strings"
+	"time"
 )
 
 const (
+	// gpgTimeout bounds every gpg run, which can otherwise wait forever on
+	// a passphrase prompt or a stalled gpg-agent. A minute leaves a person
+	// time to type a passphrase or touch a smartcard.
+	gpgTimeout = time.Minute
+
+	// gpgWaitDelay is how long a gpg run keeps waiting for gpg's stdout
+	// and stderr to close once gpg has been killed or has exited. Reading
+	// what gpg itself wrote takes far less; only a process gpg left behind
+	// holds them open longer.
+	gpgWaitDelay = time.Second
+
 	// privateDirPerms is the permission mode for temporary GPG home
 	// directories.
 	privateDirPerms os.FileMode = 0o700
@@ -66,8 +78,20 @@ func gpgArgs(opts []string, positional ...string) []string {
 }
 
 // runGPG runs the gpg binary in batch mode with the given arguments and
-// optional stdin, returning captured stdout and stderr.
-func runGPG(stdin io.Reader, args ...string) (*bytes.Buffer, *bytes.Buffer, error) {
+// optional stdin, returning captured stdout and stderr. gpg is killed when
+// ctx ends or gpgTimeout passes, whichever comes first.
+func runGPG(
+	ctx context.Context, stdin io.Reader, args ...string,
+) (*bytes.Buffer, *bytes.Buffer, error) {
+	// exec.CommandContext kills only gpg itself. A gpg-agent that gpg
+	// starts runs detached and holds none of gpg's output, but another
+	// process gpg leaves behind (a wrapper script that runs the real gpg
+	// without exec, for example) can keep gpg's stdout or stderr open, and
+	// Run would wait for it to exit. WaitDelay stops that wait
+	// gpgWaitDelay after the kill; that process is left running.
+	ctx, cancel := context.WithTimeout(ctx, gpgTimeout)
+	defer cancel()
+
 	fullArgs := append([]string{"--batch", "--no-tty"}, args...)
 
 	// G204: the executable name is a compile-time constant. The arguments
@@ -76,7 +100,8 @@ func runGPG(stdin io.Reader, args ...string) (*bytes.Buffer, *bytes.Buffer, erro
 	// option or after the "--" end-of-options marker inserted by gpgArgs,
 	// and therefore cannot be reinterpreted by gpg as an option.
 	cmd := exec.CommandContext( //nolint:gosec // G204: see comment above
-		context.Background(), "gpg", fullArgs...)
+		ctx, "gpg", fullArgs...)
+	cmd.WaitDelay = gpgWaitDelay
 	cmd.Stdin = stdin
 
 	var stdout, stderr bytes.Buffer
@@ -85,6 +110,14 @@ func runGPG(stdin io.Reader, args ...string) (*bytes.Buffer, *bytes.Buffer, erro
 	cmd.Stderr = &stderr
 
 	err := cmd.Run()
+	if err != nil && ctx.Err() != nil {
+		// gpg was killed because ctx ended, which Run reports only as
+		// "signal: killed"; return the reason instead.
+		err = ctx.Err()
+		if errors.Is(err, context.DeadlineExceeded) {
+			err = fmt.Errorf("gpg timed out: %w", err)
+		}
+	}
 
 	return &stdout, &stderr, err
 }
@@ -105,8 +138,8 @@ func parseFingerprint(colonOutput string) (string, bool) {
 
 // gpgSign creates a detached signature of the data using the specified key.
 // Returns the armored detached signature.
-func gpgSign(data []byte, keyID GPGKeyID) ([]byte, error) {
-	stdout, stderr, err := runGPG(bytes.NewReader(data),
+func gpgSign(ctx context.Context, data []byte, keyID GPGKeyID) ([]byte, error) {
+	stdout, stderr, err := runGPG(ctx, bytes.NewReader(data),
 		"--detach-sign",
 		gpgOptArmor,
 		"--local-user", string(keyID),
@@ -120,8 +153,8 @@ func gpgSign(data []byte, keyID GPGKeyID) ([]byte, error) {
 
 // gpgExportPublicKey exports the public key for the specified key ID.
 // Returns the armored public key.
-func gpgExportPublicKey(keyID GPGKeyID) ([]byte, error) {
-	stdout, stderr, err := runGPG(nil,
+func gpgExportPublicKey(ctx context.Context, keyID GPGKeyID) ([]byte, error) {
+	stdout, stderr, err := runGPG(ctx, nil,
 		gpgArgs([]string{"--export", gpgOptArmor}, string(keyID))...,
 	)
 	if err != nil {
@@ -136,8 +169,8 @@ func gpgExportPublicKey(keyID GPGKeyID) ([]byte, error) {
 }
 
 // gpgGetKeyFingerprint gets the full fingerprint for a key ID.
-func gpgGetKeyFingerprint(keyID GPGKeyID) ([]byte, error) {
-	stdout, stderr, err := runGPG(nil,
+func gpgGetKeyFingerprint(ctx context.Context, keyID GPGKeyID) ([]byte, error) {
+	stdout, stderr, err := runGPG(ctx, nil,
 		gpgArgs([]string{"--with-colons", "--fingerprint"}, string(keyID))...,
 	)
 	if err != nil {
@@ -157,7 +190,7 @@ func gpgGetKeyFingerprint(keyID GPGKeyID) ([]byte, error) {
 // gpgExtractPubKeyFingerprint imports a public key into a temporary keyring
 // and extracts its fingerprint. This verifies the key is valid and returns
 // the actual fingerprint from the key material.
-func gpgExtractPubKeyFingerprint(pubKey []byte) (string, error) {
+func gpgExtractPubKeyFingerprint(ctx context.Context, pubKey []byte) (string, error) {
 	// Create temporary directory for GPG operations
 	tmpDir, err := os.MkdirTemp("", "mfer-gpg-fingerprint-*")
 	if err != nil {
@@ -181,7 +214,7 @@ func gpgExtractPubKeyFingerprint(pubKey []byte) (string, error) {
 	}
 
 	// Import the public key into the temporary keyring
-	_, importStderr, err := runGPG(nil,
+	_, importStderr, err := runGPG(ctx, nil,
 		gpgArgs([]string{gpgOptHomedir, tmpDir, "--import"}, pubKeyFile)...,
 	)
 	if err != nil {
@@ -191,7 +224,7 @@ func gpgExtractPubKeyFingerprint(pubKey []byte) (string, error) {
 	}
 
 	// List keys to get fingerprint
-	listStdout, listStderr, err := runGPG(nil,
+	listStdout, listStderr, err := runGPG(ctx, nil,
 		"--homedir", tmpDir,
 		"--with-colons",
 		"--fingerprint",
@@ -212,7 +245,7 @@ func gpgExtractPubKeyFingerprint(pubKey []byte) (string, error) {
 
 // gpgVerify verifies a detached signature against data using the provided public key.
 // It creates a temporary keyring to import the public key for verification.
-func gpgVerify(data, signature, pubKey []byte) error {
+func gpgVerify(ctx context.Context, data, signature, pubKey []byte) error {
 	// Create temporary directory for GPG operations
 	tmpDir, err := os.MkdirTemp("", "mfer-gpg-verify-*")
 	if err != nil {
@@ -252,7 +285,7 @@ func gpgVerify(data, signature, pubKey []byte) error {
 	}
 
 	// Import the public key into the temporary keyring
-	_, importStderr, err := runGPG(nil,
+	_, importStderr, err := runGPG(ctx, nil,
 		gpgArgs([]string{gpgOptHomedir, tmpDir, "--import"}, pubKeyFile)...,
 	)
 	if err != nil {
@@ -262,7 +295,7 @@ func gpgVerify(data, signature, pubKey []byte) error {
 	}
 
 	// Verify the signature
-	_, verifyStderr, err := runGPG(nil,
+	_, verifyStderr, err := runGPG(ctx, nil,
 		gpgArgs([]string{gpgOptHomedir, tmpDir, gpgOptVerify},
 			sigFile, dataFile)...,
 	)