Lock the state directory and write vault files atomically (closes #34)

Each command that changes the state directory holds one lock: flock(2)
on `lock` in the state directory, dropped by the kernel if the process
dies, or a process-wide mutex on the in-memory test filesystem. It
covers the state directory, not each vault, because `currentvault`,
`vault create` and cross-vault moves span vaults, and a lock file in a
vault would be deleted by `vault remove` under a waiting command.

Files go through `secret.WriteFileAtomic`; versions, new secrets and
cross-vault copies are built in a temporary directory and renamed into
place; removals rename out of the way first. Left for later: replacing
an unlocker (#71) and deleting
what an interrupted command leaves under a `.tmp-` name
(#75).

Model: opus-5-5
Co-authored-by: clawbot <sneak+clawbot@sneak.cloud>

internal/secret/seunlocker_darwin.go

@@ -148,7 +148,7 @@ func (s *SecureEnclaveUnlocker) Remove() error {
 	}
 
 	Debug("Removing SE unlocker directory", "directory", s.Directory)
-	if err := s.fs.RemoveAll(s.Directory); err != nil {
+	if err := RemoveDirAtomic(s.fs, s.Directory); err != nil {
 		return fmt.Errorf("failed to remove SE unlocker directory: %w", err)
 	}
 
@@ -271,7 +271,7 @@ func CreateSecureEnclaveUnlocker(
 
 	// Write SE-encrypted long-term key
 	ltKeyPath := filepath.Join(unlockerDir, seLongtermFilename)
-	if err := afero.WriteFile(fs, ltKeyPath, encryptedLtKey, FilePerms); err != nil {
+	if err := WriteFileAtomic(fs, ltKeyPath, encryptedLtKey); err != nil {
 		return nil, fmt.Errorf(
 			"failed to write SE-encrypted long-term key: %w",
 			err,
@@ -295,7 +295,7 @@ func CreateSecureEnclaveUnlocker(
 	}
 
 	metadataPath := filepath.Join(unlockerDir, "unlocker-metadata.json")
-	if err := afero.WriteFile(fs, metadataPath, metadataBytes, FilePerms); err != nil {
+	if err := WriteFileAtomic(fs, metadataPath, metadataBytes); err != nil {
 		return nil, fmt.Errorf("failed to write metadata: %w", err)
 	}