Lock the state directory and write vault files atomically (closes #34)

Each command that changes the state directory holds one lock: flock(2)
on `lock` in the state directory, dropped by the kernel if the process
dies, or a process-wide mutex on the in-memory test filesystem. It
covers the state directory, not each vault, because `currentvault`,
`vault create` and cross-vault moves span vaults, and a lock file in a
vault would be deleted by `vault remove` under a waiting command.

Files go through `secret.WriteFileAtomic`; versions, new secrets and
cross-vault copies are built in a temporary directory and renamed into
place; removals rename out of the way first. Left for later: replacing
an unlocker (#71) and deleting
what an interrupted command leaves under a `.tmp-` name
(#75).

Model: opus-5-5

internal/cli/init.go

@@ -103,8 +103,21 @@ func (cli *Instance) setupDefaultVault(
 	return vlt, ltIdentity, nil
 }
 
-// Init initializes the secret manager
+// Init initializes the secret manager, holding the state directory lock
+// while initialize runs
 func (cli *Instance) Init(cmd *cobra.Command) error {
+	release, err := vault.LockStateDir(cli.fs, cli.stateDir)
+	if err != nil {
+		return err
+	}
+	defer release()
+
+	return cli.initialize(cmd)
+}
+
+// initialize creates the state directory, the default vault and its first
+// unlocker
+func (cli *Instance) initialize(cmd *cobra.Command) error {
 	secret.Debug("Starting secret manager initialization")
 
 	// Create state directory