PPSS tests fixed.
This commit is contained in:
Louwrentius
parent
6836784b54
commit
c1a359340c
97
ppss
97
ppss
@ -26,7 +26,7 @@
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trap 'kill_process' SIGINT
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SCRIPT_NAME="Distributed Parallel Processing Shell Script"
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SCRIPT_VERSION="2.70"
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SCRIPT_VERSION="2.80"
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#
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# The first argument to this script can be a mode.
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@ -58,12 +58,10 @@ PPSS_HOME_DIR="ppss-home"
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SOURCED="$0"
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PID="$$"
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GLOBAL_LOCK="$PPSS_DIR/PPSS-GLOBAL-LOCK-$PID" # Global lock file used by local PPSS instance.
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PAUSE_SIGNAL="$PPSS_HOME_DIR/$PPSS_DIR/pause_signal" # Pause processing if this file is present.
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PAUSE_DELAY="60" # Polling every 1 minutes by default.
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STOP_SIGNAL="$PPSS_HOME_DIR/$PPSS_DIR/stop_signal" # Stop processing if this file is present.
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GLOBAL_COUNTER=""
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GLOBAL_COUNTER_FILE="$PPSS_DIR/ppss-input-counter-$PID"
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GLOBAL_COUNTER=1
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LISTOFITEMS="$PPSS_DIR/INPUT_FILE-$PID"
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JOB_LOG_DIR="$PPSS_DIR/job_log" # Directory containing log files of processed items.
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LOGFILE="$PPSS_DIR/ppss-log-$PID.txt" # General PPSS log file. Contains lots of info.
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@ -411,16 +409,6 @@ cleanup () {
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rm "$FIFO"
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fi
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if [ -e "$GLOBAL_COUNTER_FILE" ]
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then
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rm "$GLOBAL_COUNTER_FILE"
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fi
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if [ -e "$GLOBAL_LOCK" ]
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then
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rm -rf "$GLOBAL_LOCK"
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fi
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if [ -e "$SSH_SOCKET" ]
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then
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rm -rf "$SSH_SOCKET"
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@ -896,12 +884,6 @@ init_vars () {
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MIN_JOBS=3
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fi
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#
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# Create a remote homedir for PPSS
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#
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echo 1 > $GLOBAL_COUNTER_FILE
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FIFO=/tmp/ppss-fifo-$RANDOM-$RANDOM
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if [ ! -e "$FIFO" ]
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@ -991,6 +973,7 @@ init_vars () {
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then
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mkdir "$PPSS_LOCAL_OUTPUT"
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fi
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}
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get_status () {
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@ -1039,13 +1022,17 @@ erase_ppss () {
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}
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ec2_get_pending_nodes() {
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#
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# This function has naver been tested by the author of PPSS.
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#
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RES="$(ec2-describe-instances | grep 'INSTANCE' | awk '{print $4}'| grep pending)"
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echo "$RES"
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}
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ec2_launch_nodes() {
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#
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# This function has naver been tested by the author of PPSS.
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#
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ec2run $AMI_ID -n $NUM_NODES -t $INSTANCE_TYPE -k $AWS_KEYPAIR -g $SECURITY_GROUP
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#
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@ -1603,6 +1590,7 @@ get_all_items () {
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fi
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SIZE_OF_INPUT=$(wc -l "$LISTOFITEMS" | awk '{ print $1 }')
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if [ "$SIZE_OF_INPUT" -le "0" ]
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then
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log ERROR "Source file/dir seems to be empty."
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@ -1610,7 +1598,6 @@ get_all_items () {
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cleanup
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exit 1
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fi
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}
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get_item () {
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@ -1619,30 +1606,42 @@ get_item () {
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if [ "$STOP" == "1" ]
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then
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log DEBUG "Found stop signal."
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return 1
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fi
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#
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# Return error if list size is empty.
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#
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if [ -z "$SIZE_OF_INPUT" ]
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then
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log DEBUG "Got no size of input..."
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return 1
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fi
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SIZE_OF_INPUT=$(wc -l "$LISTOFITEMS" | awk '{ print $1 }')
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#
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# Return error if the list is empty.
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#
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#if [ "$SIZE_OF_INPUT" -le "0" ]
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#then
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# return 1
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#fi
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if [ "$SIZE_OF_INPUT" -le "0" ]
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then
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SIZE_OF_INPUT=$(wc -l "$LISTOFITEMS" | awk '{ print $1 }')
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if [ "$?" = "0" ]
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then
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return 0
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else
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log DEBUG "Size of input 0 or less."
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return 1
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fi
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fi
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#
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# This variable is used to walk thtough all input file items.
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#
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GLOBAL_COUNTER=$(cat $GLOBAL_COUNTER_FILE)
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#
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# Check if all items have been processed.
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#
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#if [ "$GLOBAL_COUNTER" -gt "$SIZE_OF_INPUT" ]
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#then
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# return 1
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#fi
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if [ "$GLOBAL_COUNTER" -gt "$SIZE_OF_INPUT" ]
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then
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log DEBUG "Counter $GLOBAL_COUNTER is greater than sizeof input $SIZE_OF_INPUT."
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return 1
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fi
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ITEM="$(sed -n $GLOBAL_COUNTER\p $LISTOFITEMS)"
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@ -1652,23 +1651,19 @@ get_item () {
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return 1
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else
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((GLOBAL_COUNTER++))
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echo $GLOBAL_COUNTER > $GLOBAL_COUNTER_FILE
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LOCK=""
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if [ ! -z "$SSH_SERVER" ]
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then
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lock_item "$ITEM"
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LOCK="$?"
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else
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log DEBUG "Item lock disabled - no remote server configured."
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LOCK=0
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fi
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if [ ! "$LOCK" = "0" ]
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then
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log DEBUG "Item $ITEM is locked."
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#
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# Recursion, get_ttem calls itself, until all items are done.
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#
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get_item
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if [ ! "$LOCK" = "0" ]
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then
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log DEBUG "Item $ITEM is locked."
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#
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# Recursion, get_ttem calls itself, until all items are done.
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#
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get_item
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fi
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else
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log DEBUG "Got lock on $ITEM, processing."
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download_item "$ITEM"
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@ -1867,7 +1862,6 @@ commando () {
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RETVAL="$?"
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if [ "$RETVAL" = "0" ]
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then
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echo "$TMP - $RETVAL" >> /tmp/hoeba
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eval "$COMMAND" >> "$ITEM_LOG_FILE" 2>&1
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ERROR="$?"
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MYPID="$!"
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@ -2027,7 +2021,6 @@ listen_for_job () {
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fi
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SIZE_OF_INPUT=$(wc -l "$LISTOFITEMS" | awk '{ print $1 }')
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GLOBAL_COUNTER=$(cat $GLOBAL_COUNTER_FILE)
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PERCENT=$((100 * $GLOBAL_COUNTER / $SIZE_OF_INPUT ))
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if [ "$DIED" == "0" ] && [ "$FINISHED" == "0" ]
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then
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39
ppss-test.sh
39
ppss-test.sh
@ -1,7 +1,7 @@
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#!/bin/bash
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DEBUG="$1"
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VERSION="2.70"
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VERSION="2.80"
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TMP_DIR="/tmp/ppss"
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PPSS=./ppss
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PPSS_DIR=ppss_dir
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@ -14,6 +14,7 @@ cleanup () {
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unset RES1
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unset RES2
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GLOBAL_COUNTER=1
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for x in $REMOVEFILES
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do
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@ -37,10 +38,15 @@ parseJobStatus () {
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echo "$STATUS"
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}
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get_contents_of_input_file () {
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get_item_count_of_input_file () {
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RES=`cat $PPSS_DIR/INPUT_FILE-$$ | wc -l | awk '{ print $1 }'`
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echo "$RES"
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if [ -e "$PPSS_DIR/INPUT_FILE-$$" ]
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then
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CONTENTS_OF_INPUTFILE=`cat $PPSS_DIR/INPUT_FILE-$$ | wc -l | awk '{ print $1 }'`
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echo "$CONTENTS_OF_INPUTFILE"
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else
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echo "Error, file $PPSS_DIR/INPUT_FILE-$$ does not exist."
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fi
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}
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oneTimeSetUp () {
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@ -131,22 +137,21 @@ testMD5 () {
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init_get_all_items () {
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RECURSION="$2"
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DIR="$1"
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RECURSION="$2"
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createDirectoryWithSomeFiles
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create_working_directory
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init_vars > /dev/null 2>&1
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export SRC_DIR=$DIR
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init_vars > /dev/null 2>&1
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get_all_items
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RES=`get_contents_of_input_file`
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}
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testRecursion () {
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init_get_all_items $TMP_DIR/root 1
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RESULT=`get_item_count_of_input_file`
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EXPECTED=32
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assertEquals "Recursion not correct." "$EXPECTED" "$RES"
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assertEquals "Recursion not correct." "$EXPECTED" "$RESULT"
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rename-ppss-dir $FUNCNAME
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}
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@ -154,9 +159,10 @@ testRecursion () {
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testNoRecursion () {
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init_get_all_items $TMP_DIR/root 0
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RESULT=`get_item_count_of_input_file`
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EXPECTED=12
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assertEquals "Recursion not correct." "$EXPECTED" "$RES"
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assertEquals "Recursion not correct." "$EXPECTED" "$RESULT"
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rename-ppss-dir $FUNCNAME
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}
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@ -192,23 +198,25 @@ return_all_items () {
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while get_item
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do
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RES2="$RES2$ITEM"$'\n'
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ALL_ITEMS="$ALL_ITEMS$ITEM"$'\n'
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done
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echo "$ALL_ITEMS"
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}
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testNumberOfItems () {
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createSpecialFilenames
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init_get_all_items $TMP_DIR/root 1
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RESULT=`init_get_all_items $TMP_DIR/root 1`
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RES1=`find $TMP_DIR/root/ ! -type d`
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RES1="$RES1"$'\n' # NASTY HACK YUCK
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return_all_items
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RES2=`return_all_items`
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echo "$RES1" > a
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echo "$RES2" > b
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assertEquals "Input file and actual files not the same!" "$RES1" "$RES2"
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rename-ppss-dir $FUNCNAME
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cleanup
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}
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testNumberOfLogfiles () {
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@ -223,7 +231,6 @@ testNumberOfLogfiles () {
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RES=`ls -1 $PPSS_DIR/job_log/ | wc -l | awk '{ print $1}'`
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assertEquals "Got wrong number of log files." 40 "$RES"
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rename-ppss-dir $FUNCNAME
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cleanup
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}
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. ./shunit2
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